Wall clock time and date at job start Tue Mar 31 2020 12:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34994 * 125.52037 * 2 1 4 4 C 1.41196 * 108.24236 * 179.73864 * 3 2 1 5 5 N 1.32892 * 126.38223 * 180.02562 * 4 3 2 6 6 C 1.34034 * 119.99858 * 359.96786 * 5 4 3 7 7 O 1.21982 * 119.99799 * 0.02562 * 6 5 4 8 8 C 1.47079 * 119.99820 * 180.02562 * 6 5 4 9 9 O 1.34854 * 125.97159 * 359.69556 * 8 6 5 10 10 C 1.34002 * 109.39065 * 179.82384 * 9 8 6 11 11 C 1.35072 * 108.73915 * 0.44036 * 10 9 8 12 12 C 1.36398 * 125.97077 * 180.02562 * 8 6 5 13 13 C 1.50701 * 126.64158 * 0.02562 * 12 8 6 14 14 C 1.52994 * 109.47042 * 119.99872 * 13 12 8 15 15 C 1.53003 * 109.47270 * 239.99957 * 13 12 8 16 16 N 1.37493 * 107.23529 * 0.02562 * 4 3 2 17 17 H 0.97005 * 126.36394 * 179.97438 * 16 4 3 18 18 N 1.36450 * 125.52126 * 179.69989 * 2 1 3 19 19 C 1.46496 * 125.84956 * 0.23496 * 18 2 1 20 20 C 1.50699 * 109.47178 * 85.00508 * 19 18 2 21 21 H 1.07999 * 119.99743 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00248 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00344 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00031 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46826 * 89.99767 * 24 22 20 26 26 H 1.48499 * 109.47105 * 209.99656 * 24 22 20 27 27 H 1.48498 * 109.47122 * 330.00178 * 24 22 20 28 28 H 1.08998 * 109.47463 * 90.01889 * 1 2 3 29 29 H 1.09001 * 109.47067 * 210.02072 * 1 2 3 30 30 H 1.09001 * 109.47152 * 330.01675 * 1 2 3 31 31 H 1.08002 * 125.87819 * 359.73884 * 3 2 1 32 32 H 1.08002 * 125.63073 * 180.15377 * 10 9 8 33 33 H 1.08004 * 126.44890 * 179.71285 * 11 10 9 34 34 H 1.09003 * 109.46999 * 0.02562 * 13 12 8 35 35 H 1.09000 * 109.47292 * 60.00697 * 14 13 12 36 36 H 1.09004 * 109.47449 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.47529 * 300.00018 * 14 13 12 38 38 H 1.09002 * 109.46824 * 59.99679 * 15 13 12 39 39 H 1.08994 * 109.46876 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.47125 * 300.00172 * 15 13 12 41 41 H 1.09000 * 109.47355 * 205.00466 * 19 18 2 42 42 H 1.09002 * 109.47540 * 325.00689 * 19 18 2 43 43 H 0.96990 * 120.00473 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0987 0.0000 4 6 3.6395 0.6794 0.0061 5 7 4.7100 1.4669 0.0085 6 6 4.5620 2.7990 0.0043 7 8 3.4447 3.2885 -0.0012 8 6 5.7467 3.6705 0.0063 9 8 7.0314 3.2608 0.0181 10 6 7.8394 4.3298 0.0122 11 6 7.0806 5.4473 0.0065 12 6 5.7379 5.0345 0.0031 13 6 4.5230 5.9261 -0.0027 14 6 4.5348 6.8122 1.2445 15 6 4.5423 6.8064 -1.2540 16 7 3.6385 -0.6955 0.0092 17 1 4.4192 -1.2713 0.0131 18 7 2.2998 -1.1106 0.0058 19 6 1.8318 -2.4988 0.0082 20 6 1.5589 -2.9393 -1.4068 21 1 1.7184 -2.2539 -2.2261 22 6 1.1064 -4.2177 -1.6558 23 7 0.9135 -5.0529 -0.6584 24 14 0.7687 -4.7640 -3.4100 25 1 2.0016 -5.3541 -3.9906 26 1 -0.3147 -5.7795 -3.4123 27 1 0.3511 -3.5926 -4.2215 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5136 31 1 1.9468 2.1223 -0.0040 32 1 8.9191 4.3025 0.0166 33 1 7.4388 6.4662 0.0054 34 1 3.6221 5.3125 -0.0035 35 1 5.4356 7.4258 1.2457 36 1 3.6562 7.4574 1.2401 37 1 4.5210 6.1851 2.1360 38 1 4.5339 6.1750 -2.1425 39 1 3.6633 7.4509 -1.2583 40 1 5.4432 7.4199 -1.2527 41 1 2.5968 -3.1393 0.4470 42 1 0.9160 -2.5725 0.5947 43 1 0.5956 -5.9523 -0.8335 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340006168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:13 Heat of formation + Delta-G solvation = 63.864777 kcal Electronic energy + Delta-G solvation = -25877.616294 eV Core-core repulsion = 22119.925615 eV Total energy + Delta-G solvation = -3757.690679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34588 -40.98720 -38.38118 -35.95037 -34.39671 -33.20393 -32.33241 -31.55698 -30.83484 -29.44483 -27.59748 -27.02004 -26.82484 -24.02919 -22.85563 -22.33900 -21.28305 -19.95942 -19.65444 -18.91646 -17.34316 -16.97153 -16.50039 -15.90712 -15.72319 -15.24026 -14.94962 -14.87610 -14.38058 -14.06686 -13.69250 -13.58172 -13.11642 -13.06177 -12.95370 -12.80901 -12.73679 -12.49361 -12.25104 -12.14727 -12.09415 -11.86787 -11.38189 -11.11535 -11.09255 -11.04992 -10.68517 -10.55268 -10.42774 -9.56504 -9.53542 -9.47188 -8.95880 -8.94840 -8.44912 -8.31318 -7.03443 -6.54226 -4.69674 1.19411 1.90053 1.99092 2.59840 3.03243 3.09236 3.11621 3.15406 3.21321 4.01380 4.14438 4.49339 4.71135 4.77998 4.84185 4.93749 4.95680 5.30723 5.36590 5.46774 5.49545 5.69181 5.70273 5.74700 5.80819 5.84286 5.90091 5.97883 6.05845 6.10545 6.18641 6.19839 6.37460 6.41815 6.45849 6.55807 6.56603 6.63676 6.74667 7.26809 7.33949 7.42232 7.46928 7.57618 7.86128 8.13748 8.39118 9.01120 9.19299 10.48896 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.002720 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.853643 B =10292.607731 C =10711.434580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.192 3.808 3 C -0.333 4.333 4 C 0.471 3.529 5 N -0.687 5.687 6 C 0.573 3.427 7 O -0.560 6.560 8 C -0.019 4.019 9 O -0.146 6.146 10 C -0.032 4.032 11 C -0.221 4.221 12 C -0.113 4.113 13 C -0.048 4.048 14 C -0.136 4.136 15 C -0.136 4.136 16 N -0.464 5.464 17 H 0.447 0.553 18 N -0.336 5.336 19 C 0.253 3.747 20 C -0.557 4.557 21 H 0.069 0.931 22 C 0.071 3.929 23 N -0.886 5.886 24 Si 0.909 3.091 25 H -0.276 1.276 26 H -0.281 1.281 27 H -0.269 1.269 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.184 0.816 32 H 0.201 0.799 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 14.656 2.572 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 C -0.364 4.364 4 C 0.222 3.778 5 N -0.451 5.451 6 C 0.359 3.641 7 O -0.443 6.443 8 C -0.072 4.072 9 O -0.040 6.040 10 C -0.103 4.103 11 C -0.240 4.240 12 C -0.116 4.116 13 C -0.067 4.067 14 C -0.193 4.193 15 C -0.194 4.194 16 N -0.186 5.186 17 H 0.294 0.706 18 N -0.121 5.121 19 C 0.136 3.864 20 C -0.595 4.595 21 H 0.088 0.912 22 C -0.134 4.134 23 N -0.523 5.523 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.206 1.206 27 H -0.194 1.194 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.201 0.799 32 H 0.218 0.782 33 H 0.164 0.836 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.171 13.702 2.641 14.881 hybrid contribution 0.087 -0.374 -0.953 1.027 sum 5.258 13.327 1.688 14.426 Atomic orbital electron populations 1.20617 0.86175 1.03994 1.04411 1.21366 0.94587 0.85508 0.92059 1.22249 0.91053 1.00362 1.22770 1.19070 0.91473 0.82220 0.85010 1.68920 1.28090 1.04536 1.43525 1.17374 0.84397 0.85416 0.76929 1.90620 1.24072 1.78592 1.51016 1.21867 0.82474 0.92763 1.10086 1.84195 1.15811 1.34485 1.69529 1.24210 0.96625 0.84480 1.04946 1.21546 0.92647 0.99569 1.10232 1.20472 0.95529 0.92186 1.03411 1.19936 0.96363 0.95372 0.94985 1.21751 1.01089 0.99005 0.97481 1.21751 1.01079 0.99053 0.97473 1.44579 0.98980 1.05182 1.69815 0.70582 1.48011 0.92684 1.08350 1.63103 1.20084 0.96556 0.70040 0.99671 1.21361 1.47821 0.98808 0.91507 0.91234 1.24941 0.94189 0.95773 0.98488 1.69888 1.43948 1.07004 1.31427 0.86298 0.78380 0.78764 0.83026 1.20179 1.20632 1.19383 0.89016 0.90009 0.89422 0.79864 0.78231 0.83618 0.86988 0.93205 0.92610 0.92830 0.92807 0.92606 0.93195 0.93002 0.91309 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 10.09 36.01 0.36 -0.90 16 2 C 0.19 3.34 6.93 -81.69 -0.57 2.77 16 3 C -0.33 -6.24 9.41 -39.61 -0.37 -6.62 16 4 C 0.47 9.36 8.07 -155.26 -1.25 8.10 16 5 N -0.69 -14.33 10.53 -12.39 -0.13 -14.46 16 6 C 0.57 11.77 7.71 -13.01 -0.10 11.67 16 7 O -0.56 -11.67 11.33 4.93 0.06 -11.61 16 8 C -0.02 -0.35 7.16 -36.66 -0.26 -0.61 16 9 O -0.15 -2.47 10.67 4.98 0.05 -2.42 16 10 C -0.03 -0.40 12.08 29.61 0.36 -0.05 16 11 C -0.22 -2.80 10.42 -39.87 -0.42 -3.22 16 12 C -0.11 -1.75 4.87 -104.45 -0.51 -2.26 16 13 C -0.05 -0.68 3.19 -91.77 -0.29 -0.97 16 14 C -0.14 -1.59 9.09 37.15 0.34 -1.25 16 15 C -0.14 -1.62 9.09 37.16 0.34 -1.28 16 16 N -0.46 -8.48 7.38 31.34 0.23 -8.25 16 17 H 0.45 7.21 8.96 -182.55 -1.64 5.57 16 18 N -0.34 -6.30 3.63 -58.03 -0.21 -6.51 16 19 C 0.25 5.22 5.93 -5.20 -0.03 5.19 16 20 C -0.56 -13.04 9.39 -34.44 -0.32 -13.36 16 21 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 22 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -22.16 13.29 55.43 0.74 -21.43 16 24 Si 0.91 19.02 29.54 -169.99 -5.02 14.00 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.09 7.13 -51.93 -0.37 0.72 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.18 3.50 5.77 -52.49 -0.30 3.19 16 32 H 0.20 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.11 1.86 5.47 -51.93 -0.28 1.57 16 35 H 0.05 0.52 8.05 -51.93 -0.42 0.10 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.52 8.05 -51.93 -0.42 0.10 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.42 7.17 -51.93 -0.37 1.05 16 43 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -28.96 366.43 -8.74 -37.71 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.15 Total: 8.63 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.83 Total: -1.17 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.63 Total: -50.65 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.11 Total: -14.03 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.96 -8.74 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340006168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.572 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds