Wall clock time and date at job start Tue Mar 31 2020 12:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 120.00242 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99909 * 3 2 1 5 5 C 1.46503 * 120.00200 * 274.95618 * 4 3 2 6 6 C 1.50707 * 109.47033 * 263.12244 * 5 4 3 7 7 H 1.08000 * 119.99753 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99991 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99903 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00267 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47067 * 90.00090 * 10 8 6 12 12 H 1.48499 * 109.47330 * 210.00471 * 10 8 6 13 13 H 1.48508 * 109.46930 * 330.00417 * 10 8 6 14 14 C 1.34771 * 120.00188 * 94.95487 * 4 3 2 15 15 O 1.21360 * 119.99708 * 3.66055 * 14 4 3 16 16 C 1.49369 * 120.00578 * 183.65774 * 14 4 3 17 17 O 1.21365 * 119.99279 * 354.25447 * 16 14 4 18 18 N 1.34775 * 120.00213 * 174.52785 * 16 14 4 19 19 C 1.39244 * 119.99565 * 184.99870 * 18 16 14 20 20 C 1.39084 * 119.69619 * 185.15477 * 19 18 16 21 21 C 1.38356 * 119.09794 * 179.97438 * 20 19 18 22 22 C 1.50699 * 120.75240 * 179.97438 * 21 20 19 23 23 C 1.38844 * 118.49684 * 0.02562 * 21 20 19 24 24 C 1.38094 * 119.31392 * 359.97438 * 23 21 20 25 25 C 1.50708 * 119.56871 * 180.02562 * 24 23 21 26 26 N 1.31909 * 120.85452 * 359.74361 * 24 23 21 27 27 H 1.07996 * 119.99907 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99842 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00114 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46905 * 5.00170 * 3 2 1 31 31 H 1.08995 * 109.47484 * 245.00080 * 3 2 1 32 32 H 1.09001 * 109.46996 * 23.11868 * 5 4 3 33 33 H 1.08997 * 109.47528 * 143.12070 * 5 4 3 34 34 H 0.96996 * 120.00202 * 180.02562 * 9 8 6 35 35 H 0.96992 * 120.00198 * 5.00310 * 18 16 14 36 36 H 1.07994 * 120.45362 * 0.02562 * 20 19 18 37 37 H 1.09003 * 109.47518 * 89.99831 * 22 21 20 38 38 H 1.09003 * 109.46912 * 209.99895 * 22 21 20 39 39 H 1.08996 * 109.47218 * 329.99518 * 22 21 20 40 40 H 1.08002 * 120.34104 * 179.97438 * 23 21 20 41 41 H 1.08993 * 109.46814 * 90.00430 * 25 24 23 42 42 H 1.09000 * 109.46597 * 210.00163 * 25 24 23 43 43 H 1.09003 * 109.46837 * 329.99649 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5288 1.7630 2.4521 6 6 2.8687 3.2173 2.6543 7 1 3.3796 3.7656 1.8766 8 6 2.5274 3.8477 3.8320 9 7 2.8236 5.1170 4.0082 10 14 1.6431 2.8996 5.1768 11 1 2.6419 2.2827 6.0862 12 1 0.7770 3.8267 5.9485 13 1 0.8074 1.8355 4.5646 14 6 4.2774 0.9598 0.9574 15 8 4.6794 0.6664 -0.1494 16 6 5.2054 0.9087 2.1268 17 8 4.8340 1.3010 3.2136 18 7 6.4567 0.4321 1.9737 19 6 7.2868 0.2870 3.0823 20 6 8.6102 -0.1026 2.9058 21 6 9.4241 -0.2425 4.0158 22 6 10.8636 -0.6633 3.8678 23 6 8.8844 0.0125 5.2694 24 6 7.5616 0.3958 5.3707 25 6 6.9701 0.6747 6.7285 26 7 6.8107 0.5264 4.2941 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3587 2.1317 0.0896 31 1 2.6214 1.4027 -0.9313 32 1 1.4490 1.6297 2.5184 33 1 3.0166 1.1654 3.2221 34 1 2.5839 5.5604 4.8368 35 1 6.7791 0.1903 1.0915 36 1 8.9975 -0.2926 1.9158 37 1 11.4905 0.2208 3.7511 38 1 11.1742 -1.2143 4.7555 39 1 10.9673 -1.3007 2.9897 40 1 9.4929 -0.0878 6.1560 41 1 7.1068 1.7275 6.9751 42 1 5.9058 0.4396 6.7163 43 1 7.4697 0.0584 7.4760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340617222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:01 Heat of formation + Delta-G solvation = 17.250188 kcal Electronic energy + Delta-G solvation = -26699.973843 eV Core-core repulsion = 22940.261804 eV Total energy + Delta-G solvation = -3759.712039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82791 -39.76924 -37.91850 -36.06139 -34.83143 -34.06635 -33.27223 -32.09629 -31.19584 -28.15061 -28.03391 -27.34424 -26.56411 -24.17635 -22.58663 -21.84445 -21.10997 -19.87375 -19.09957 -17.39247 -17.03245 -16.89976 -16.04820 -15.98774 -15.72525 -15.39792 -15.13924 -14.61880 -14.37051 -14.01580 -13.78144 -13.59444 -13.35636 -13.09338 -12.87694 -12.79448 -12.58154 -12.33688 -12.19879 -12.07344 -11.98158 -11.66487 -11.58908 -11.27802 -10.95534 -10.70624 -10.44929 -10.25680 -10.14349 -9.53295 -9.43281 -9.35014 -9.21893 -8.59430 -8.35846 -8.09094 -7.90068 -6.02962 -4.00916 1.15530 1.37238 2.16091 2.32669 2.80903 3.36141 3.40535 3.44880 3.69709 3.91551 4.08214 4.45850 4.47505 4.61607 4.82650 5.03572 5.12579 5.17657 5.20277 5.31927 5.36971 5.37229 5.38631 5.58248 5.64649 5.76053 5.77145 5.79365 5.99531 6.02307 6.16954 6.19302 6.31157 6.41580 6.44381 6.76036 6.83182 6.87113 7.01067 7.18477 7.30198 7.60050 7.87740 8.13438 8.40203 8.51749 8.62581 8.97387 9.57726 11.10353 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.004849 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.271395 B = 5773.243932 C = 7448.825528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.137 3.863 4 N -0.550 5.550 5 C 0.193 3.807 6 C -0.520 4.520 7 H 0.071 0.929 8 C 0.082 3.918 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.270 1.270 12 H -0.288 1.288 13 H -0.267 1.267 14 C 0.513 3.487 15 O -0.557 6.557 16 C 0.484 3.516 17 O -0.391 6.391 18 N -0.648 5.648 19 C 0.381 3.619 20 C -0.221 4.221 21 C -0.015 4.015 22 C -0.113 4.113 23 C -0.214 4.214 24 C 0.169 3.831 25 C -0.105 4.105 26 N -0.479 5.479 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.263 0.737 35 H 0.423 0.577 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.852 -13.251 -0.788 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.015 3.985 4 N -0.280 5.280 5 C 0.073 3.927 6 C -0.558 4.558 7 H 0.090 0.910 8 C -0.121 4.121 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.195 1.195 12 H -0.214 1.214 13 H -0.192 1.192 14 C 0.295 3.705 15 O -0.438 6.438 16 C 0.264 3.736 17 O -0.253 6.253 18 N -0.297 5.297 19 C 0.149 3.851 20 C -0.244 4.244 21 C -0.023 4.023 22 C -0.169 4.169 23 C -0.236 4.236 24 C 0.030 3.970 25 C -0.162 4.162 26 N -0.195 5.195 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.260 0.740 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.729 -12.641 -0.363 15.367 hybrid contribution 0.543 -0.589 0.186 0.823 sum 9.272 -13.231 -0.177 16.157 Atomic orbital electron populations 1.23827 0.95718 1.01858 1.00908 1.23325 0.96186 0.98959 0.99566 1.20640 0.92226 0.95342 0.90278 1.47896 1.07437 1.59937 1.12689 1.20475 0.95539 0.97729 0.78997 1.21099 1.39067 0.92597 1.03036 0.91041 1.24711 0.95176 0.94564 0.97613 1.69894 1.47275 1.10237 1.26216 0.86871 0.80007 0.80018 0.82928 1.19513 1.21448 1.19208 1.19789 0.83550 0.78995 0.88169 1.90653 1.76389 1.51299 1.25456 1.20405 0.82573 0.80285 0.90360 1.90951 1.72317 1.35997 1.26035 1.43342 1.13135 1.63962 1.09277 1.18376 0.87445 0.92439 0.86826 1.21254 0.92823 1.10262 1.00087 1.19990 0.95935 0.94028 0.92375 1.20790 0.91455 1.01723 1.02969 1.21680 0.96544 1.07620 0.97748 1.21154 0.89961 0.91655 0.94249 1.20734 1.02406 1.02624 0.90448 1.67501 1.37895 1.17293 0.96838 0.88193 0.88620 0.87624 0.89145 0.89037 0.95202 0.91612 0.92683 0.73953 0.84820 0.90544 0.91091 0.91127 0.85116 0.90092 0.90104 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 14.32 29.02 0.42 -2.04 16 2 C -0.16 -2.46 9.84 -36.02 -0.35 -2.82 16 3 C 0.14 2.44 5.90 -5.19 -0.03 2.41 16 4 N -0.55 -11.71 2.46 -176.97 -0.44 -12.15 16 5 C 0.19 4.65 3.86 -5.19 -0.02 4.63 16 6 C -0.52 -14.76 8.86 -34.44 -0.31 -15.07 16 7 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 8 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 9 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 10 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 14 C 0.51 10.77 7.67 -11.63 -0.09 10.68 16 15 O -0.56 -11.45 15.98 5.49 0.09 -11.36 16 16 C 0.48 10.21 7.71 -11.62 -0.09 10.12 16 17 O -0.39 -9.58 10.66 5.48 0.06 -9.53 16 18 N -0.65 -11.14 5.38 -11.86 -0.06 -11.21 16 19 C 0.38 6.45 7.41 -154.82 -1.15 5.31 16 20 C -0.22 -2.87 9.64 -39.22 -0.38 -3.25 16 21 C -0.02 -0.18 5.91 -104.35 -0.62 -0.79 16 22 C -0.11 -0.86 10.06 36.01 0.36 -0.50 16 23 C -0.21 -2.66 9.44 -39.41 -0.37 -3.03 16 24 C 0.17 2.63 6.78 -82.61 -0.56 2.07 16 25 C -0.10 -1.40 10.17 36.01 0.37 -1.04 16 26 N -0.48 -9.15 7.83 -8.62 -0.07 -9.22 16 27 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 28 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.09 1.58 7.76 -51.93 -0.40 1.18 16 31 H 0.09 1.58 7.23 -51.93 -0.38 1.20 16 32 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 33 H 0.07 1.67 4.84 -51.93 -0.25 1.42 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.42 5.97 8.18 -40.82 -0.33 5.63 16 36 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 39 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -34.91 367.76 -7.64 -42.55 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.95 Total: 6.13 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -2.92 Total: 8.99 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.21 Total: -59.61 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.15 Total: -20.88 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.91 -7.64 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340617222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.804 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds