Wall clock time and date at job start Tue Mar 31 2020 12:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 120.00242 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99909 * 3 2 1 5 5 C 1.46503 * 120.00200 * 274.95618 * 4 3 2 6 6 C 1.50707 * 109.47033 * 263.12244 * 5 4 3 7 7 H 1.08000 * 119.99753 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99991 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99903 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00267 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47067 * 90.00090 * 10 8 6 12 12 H 1.48499 * 109.47330 * 210.00471 * 10 8 6 13 13 H 1.48508 * 109.46930 * 330.00417 * 10 8 6 14 14 C 1.34771 * 120.00188 * 94.95487 * 4 3 2 15 15 O 1.21360 * 119.99708 * 3.66055 * 14 4 3 16 16 C 1.49369 * 120.00578 * 183.65774 * 14 4 3 17 17 O 1.21365 * 119.99279 * 354.25447 * 16 14 4 18 18 N 1.34775 * 120.00213 * 174.52785 * 16 14 4 19 19 C 1.39244 * 119.99565 * 184.99870 * 18 16 14 20 20 C 1.39084 * 119.69619 * 185.15477 * 19 18 16 21 21 C 1.38356 * 119.09794 * 179.97438 * 20 19 18 22 22 C 1.50699 * 120.75240 * 179.97438 * 21 20 19 23 23 C 1.38844 * 118.49684 * 0.02562 * 21 20 19 24 24 C 1.38094 * 119.31392 * 359.97438 * 23 21 20 25 25 C 1.50708 * 119.56871 * 180.02562 * 24 23 21 26 26 N 1.31909 * 120.85452 * 359.74361 * 24 23 21 27 27 H 1.07996 * 119.99907 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99842 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00114 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46905 * 5.00170 * 3 2 1 31 31 H 1.08995 * 109.47484 * 245.00080 * 3 2 1 32 32 H 1.09001 * 109.46996 * 23.11868 * 5 4 3 33 33 H 1.08997 * 109.47528 * 143.12070 * 5 4 3 34 34 H 0.96996 * 120.00202 * 180.02562 * 9 8 6 35 35 H 0.96992 * 120.00198 * 5.00310 * 18 16 14 36 36 H 1.07994 * 120.45362 * 0.02562 * 20 19 18 37 37 H 1.09003 * 109.47518 * 89.99831 * 22 21 20 38 38 H 1.09003 * 109.46912 * 209.99895 * 22 21 20 39 39 H 1.08996 * 109.47218 * 329.99518 * 22 21 20 40 40 H 1.08002 * 120.34104 * 179.97438 * 23 21 20 41 41 H 1.08993 * 109.46814 * 90.00430 * 25 24 23 42 42 H 1.09000 * 109.46597 * 210.00163 * 25 24 23 43 43 H 1.09003 * 109.46837 * 329.99649 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5288 1.7630 2.4521 6 6 2.8687 3.2173 2.6543 7 1 3.3796 3.7656 1.8766 8 6 2.5274 3.8477 3.8320 9 7 2.8236 5.1170 4.0082 10 14 1.6431 2.8996 5.1768 11 1 2.6419 2.2827 6.0862 12 1 0.7770 3.8267 5.9485 13 1 0.8074 1.8355 4.5646 14 6 4.2774 0.9598 0.9574 15 8 4.6794 0.6664 -0.1494 16 6 5.2054 0.9087 2.1268 17 8 4.8340 1.3010 3.2136 18 7 6.4567 0.4321 1.9737 19 6 7.2868 0.2870 3.0823 20 6 8.6102 -0.1026 2.9058 21 6 9.4241 -0.2425 4.0158 22 6 10.8636 -0.6633 3.8678 23 6 8.8844 0.0125 5.2694 24 6 7.5616 0.3958 5.3707 25 6 6.9701 0.6747 6.7285 26 7 6.8107 0.5264 4.2941 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3587 2.1317 0.0896 31 1 2.6214 1.4027 -0.9313 32 1 1.4490 1.6297 2.5184 33 1 3.0166 1.1654 3.2221 34 1 2.5839 5.5604 4.8368 35 1 6.7791 0.1903 1.0915 36 1 8.9975 -0.2926 1.9158 37 1 11.4905 0.2208 3.7511 38 1 11.1742 -1.2143 4.7555 39 1 10.9673 -1.3007 2.9897 40 1 9.4929 -0.0878 6.1560 41 1 7.1068 1.7275 6.9751 42 1 5.9058 0.4396 6.7163 43 1 7.4697 0.0584 7.4760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340617222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:01 Heat of formation + Delta-G solvation = -5.818139 kcal Electronic energy + Delta-G solvation = -26700.974160 eV Core-core repulsion = 22940.261804 eV Total energy + Delta-G solvation = -3760.712357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.21576 -41.14834 -39.44877 -37.67413 -36.18988 -35.04399 -34.99879 -33.94097 -32.40879 -30.10042 -29.03938 -28.34556 -27.94026 -25.64402 -24.44150 -23.13143 -22.35744 -21.09514 -20.47161 -19.16534 -18.88640 -18.41402 -17.53910 -17.22324 -16.97610 -16.85849 -16.50409 -16.06682 -15.91009 -15.74036 -15.14719 -14.80726 -14.64601 -14.39700 -14.16874 -14.09206 -13.86982 -13.65361 -13.34653 -13.31718 -13.19874 -13.11098 -12.89404 -12.71126 -12.49800 -12.34106 -12.20575 -11.96660 -11.71108 -11.55141 -10.88716 -10.69962 -10.39446 -10.37437 -9.90574 -9.67853 -9.24089 -8.28897 -6.30960 -0.06501 0.32409 0.66657 1.04481 1.33334 1.41034 1.44747 1.51523 2.16532 2.35668 2.47356 2.87061 3.09222 3.14478 3.53978 3.73982 3.99822 4.00437 4.10436 4.17410 4.24984 4.43606 4.55240 4.62582 4.63328 4.72575 4.74109 4.76893 4.85935 4.88912 4.95857 5.00983 5.08138 5.25005 5.28010 5.35018 5.42972 5.48145 5.64906 5.79017 5.84394 5.95599 6.04765 6.31153 6.64841 6.65858 6.96378 7.27275 7.31473 8.88285 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.004849 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.271395 B = 5773.243932 C = 7448.825528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.184 4.184 3 C 0.134 3.866 4 N -0.557 5.557 5 C 0.209 3.791 6 C -0.515 4.515 7 H 0.025 0.975 8 C 0.024 3.976 9 N -0.947 5.947 10 Si 0.939 3.061 11 H -0.277 1.277 12 H -0.279 1.279 13 H -0.239 1.239 14 C 0.509 3.491 15 O -0.555 6.555 16 C 0.482 3.518 17 O -0.437 6.437 18 N -0.635 5.635 19 C 0.342 3.658 20 C -0.209 4.209 21 C -0.014 4.014 22 C -0.109 4.109 23 C -0.199 4.199 24 C 0.135 3.865 25 C -0.102 4.102 26 N -0.532 5.532 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.265 0.735 35 H 0.434 0.566 36 H 0.165 0.835 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.167 0.833 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.939 -15.865 -0.424 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.203 4.203 3 C 0.013 3.987 4 N -0.287 5.287 5 C 0.088 3.912 6 C -0.553 4.553 7 H 0.043 0.957 8 C -0.174 4.174 9 N -0.587 5.587 10 Si 0.763 3.237 11 H -0.203 1.203 12 H -0.204 1.204 13 H -0.163 1.163 14 C 0.291 3.709 15 O -0.436 6.436 16 C 0.262 3.738 17 O -0.303 6.303 18 N -0.286 5.286 19 C 0.112 3.888 20 C -0.232 4.232 21 C -0.022 4.022 22 C -0.165 4.165 23 C -0.220 4.220 24 C -0.002 4.002 25 C -0.159 4.159 26 N -0.249 5.249 27 H 0.124 0.876 28 H 0.141 0.859 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.275 0.725 36 H 0.182 0.818 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.185 0.815 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.846 -15.294 -0.048 18.190 hybrid contribution 0.370 0.217 -0.005 0.429 sum 10.217 -15.077 -0.053 18.213 Atomic orbital electron populations 1.24105 0.94928 1.03418 0.97201 1.23124 0.96818 0.97506 1.02885 1.20814 0.91873 0.97078 0.88943 1.47926 1.08174 1.59930 1.12646 1.20087 0.95902 0.94716 0.80545 1.21233 1.37796 0.94539 1.01733 0.95703 1.25581 0.96231 0.95379 1.00173 1.70041 1.49330 1.12187 1.27176 0.85845 0.78966 0.79303 0.79610 1.20308 1.20447 1.16266 1.19931 0.83653 0.78939 0.88367 1.90632 1.76307 1.51334 1.25283 1.20522 0.83667 0.79931 0.89691 1.90919 1.73531 1.38592 1.27275 1.43158 1.12013 1.63021 1.10368 1.18714 0.88879 0.95009 0.86226 1.21619 0.91058 1.08249 1.02269 1.20552 0.97816 0.92442 0.91423 1.20887 0.88275 1.02636 1.04687 1.22079 0.95298 1.04933 0.99650 1.21572 0.91556 0.93153 0.93960 1.20774 1.01098 1.03055 0.90963 1.67328 1.40360 1.18802 0.98406 0.87630 0.85937 0.87421 0.89326 0.89123 0.93840 0.92250 0.92561 0.72523 0.81788 0.89334 0.89210 0.89612 0.81549 0.90668 0.92886 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 14.32 67.78 0.97 -2.82 16 2 C -0.18 -5.39 9.84 25.65 0.25 -5.14 16 3 C 0.13 4.77 5.90 85.64 0.50 5.28 16 4 N -0.56 -24.26 2.46 -832.17 -2.05 -26.30 16 5 C 0.21 10.27 3.86 85.63 0.33 10.60 16 6 C -0.51 -30.46 8.86 25.60 0.23 -30.23 16 7 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 8 C 0.02 1.46 5.47 84.65 0.46 1.92 16 9 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 10 Si 0.94 46.10 27.47 68.60 1.88 47.98 16 11 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 14 C 0.51 22.00 7.67 87.24 0.67 22.67 16 15 O -0.55 -23.07 15.98 -3.28 -0.05 -23.12 16 16 C 0.48 21.21 7.71 87.24 0.67 21.88 16 17 O -0.44 -22.58 10.66 -3.29 -0.04 -22.62 16 18 N -0.64 -22.41 5.38 -309.78 -1.67 -24.08 16 19 C 0.34 11.71 7.41 132.97 0.99 12.70 16 20 C -0.21 -5.05 9.64 22.50 0.22 -4.83 16 21 C -0.01 -0.29 5.91 -19.69 -0.12 -0.40 16 22 C -0.11 -1.15 10.06 71.24 0.72 -0.44 16 23 C -0.20 -4.44 9.44 22.38 0.21 -4.23 16 24 C 0.14 4.21 6.78 42.52 0.29 4.50 16 25 C -0.10 -2.75 10.17 71.24 0.72 -2.02 16 26 N -0.53 -21.01 7.83 -181.18 -1.42 -22.43 16 27 H 0.11 2.41 7.84 -2.91 -0.02 2.39 16 28 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.11 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.09 3.12 7.76 -2.39 -0.02 3.10 16 31 H 0.09 3.17 7.23 -2.39 -0.02 3.16 16 32 H 0.04 2.02 7.08 -2.39 -0.02 2.00 16 33 H 0.06 3.09 4.84 -2.39 -0.01 3.08 16 34 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.43 12.35 8.18 -92.71 -0.76 11.59 16 36 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 39 H 0.09 0.71 8.10 -2.39 -0.02 0.69 16 40 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.11 2.00 8.08 -2.39 -0.02 1.98 16 Total: -1.00 -81.16 367.76 4.30 -76.86 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.22 Total: 25.00 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 7.12 Total: 29.43 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -4.83 Total: -133.54 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.09 Total: -45.74 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.88 Total: 47.98 kcal Total: -81.16 4.30 -76.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340617222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.043 kcal (2) G-P(sol) polarization free energy of solvation -81.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds