Wall clock time and date at job start Tue Mar 31 2020 11:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35689 * 116.99901 * 2 1 4 4 C 1.38779 * 119.62577 * 180.25478 * 3 2 1 5 5 C 1.39452 * 118.96616 * 180.29558 * 4 3 2 6 6 C 1.48497 * 120.86820 * 179.73575 * 5 4 3 7 7 N 1.30724 * 126.41104 * 179.69705 * 6 5 4 8 8 O 1.21284 * 110.10631 * 179.97438 * 7 6 5 9 9 C 1.33670 * 110.02063 * 0.02562 * 8 7 6 10 10 C 1.50703 * 126.44245 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46912 * 270.02335 * 10 9 8 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00339 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00310 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00776 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99696 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47265 * 89.99852 * 18 16 14 20 20 H 1.48502 * 109.47140 * 209.99881 * 18 16 14 21 21 H 1.48501 * 109.46982 * 329.99994 * 18 16 14 22 22 N 1.30973 * 107.11487 * 0.23775 * 9 8 7 23 23 C 1.39861 * 118.26026 * 359.46217 * 5 4 3 24 24 C 1.37881 * 119.15526 * 0.27232 * 23 5 4 25 25 C 1.50697 * 119.52452 * 180.02562 * 24 23 5 26 26 N 1.31982 * 120.95310 * 0.02562 * 24 23 5 27 27 H 1.09000 * 109.47069 * 59.99745 * 1 2 3 28 28 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47119 * 300.00299 * 1 2 3 30 30 H 1.07991 * 120.51891 * 0.02838 * 4 3 2 31 31 H 1.09002 * 109.47152 * 150.02107 * 10 9 8 32 32 H 1.09001 * 109.46980 * 30.02207 * 10 9 8 33 33 H 1.09001 * 109.47194 * 299.99742 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99914 * 11 10 9 35 35 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 36 36 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 37 37 H 1.08992 * 109.47098 * 299.99158 * 13 12 11 38 38 H 1.09001 * 109.47583 * 60.00267 * 13 12 11 39 39 H 0.96996 * 120.00667 * 180.02562 * 17 16 14 40 40 H 1.08005 * 120.42221 * 180.29920 * 23 5 4 41 41 H 1.09000 * 109.47327 * 89.99747 * 25 24 23 42 42 H 1.09002 * 109.47316 * 210.00494 * 25 24 23 43 43 H 1.09002 * 109.47036 * 329.99872 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4313 1.2726 -0.0054 5 6 4.0501 2.5223 0.0010 6 6 5.5304 2.6395 0.0015 7 7 6.2209 3.7496 0.0016 8 8 7.4082 3.5020 0.0026 9 6 7.5999 2.1791 0.0026 10 6 8.9280 1.4670 0.0031 11 6 9.3783 1.2265 -1.4392 12 6 10.7264 0.5030 -1.4387 13 6 11.1769 0.2631 -2.8810 14 6 12.5051 -0.4490 -2.8805 15 1 12.9802 -0.7053 -1.9450 16 6 13.1134 -0.7744 -4.0743 17 7 14.2722 -1.3963 -4.0739 18 14 12.2915 -0.3318 -5.6923 19 1 12.7357 1.0191 -6.1200 20 1 12.6683 -1.3276 -6.7276 21 1 10.8170 -0.3352 -5.5157 22 7 6.4163 1.6182 -0.0036 23 6 3.2399 3.6624 0.0010 24 6 1.8693 3.5124 0.0005 25 6 0.9884 4.7352 -0.0001 26 7 1.3176 2.3135 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0218 0.3684 -0.0100 31 1 8.8274 0.5108 0.5166 32 1 9.6685 2.0795 0.5176 33 1 8.6378 0.6140 -1.9537 34 1 9.4789 2.1827 -1.9526 35 1 11.4671 1.1151 -0.9242 36 1 10.6254 -0.4533 -0.9253 37 1 10.4365 -0.3489 -3.3959 38 1 11.2782 1.2195 -3.3940 39 1 14.7003 -1.6249 -4.9137 40 1 3.6823 4.6477 0.0010 41 1 0.7765 5.0299 -1.0278 42 1 0.0538 4.5100 0.5135 43 1 1.4980 5.5503 0.5138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350322365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:08 Heat of formation + Delta-G solvation = 45.649296 kcal Electronic energy + Delta-G solvation = -24630.476310 eV Core-core repulsion = 20871.995748 eV Total energy + Delta-G solvation = -3758.480561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.77850 -41.08794 -38.49280 -36.48999 -35.88716 -33.92402 -32.99170 -32.40336 -31.65221 -29.83086 -28.72136 -27.10959 -26.08855 -25.35231 -23.74516 -22.76036 -22.11717 -20.95691 -20.18730 -18.66954 -18.26894 -17.41359 -17.14147 -16.67122 -16.42819 -16.26352 -15.30932 -15.28370 -14.63909 -14.55415 -14.51914 -14.23546 -13.76582 -13.15798 -13.08707 -12.95317 -12.82052 -12.66467 -12.53889 -12.43803 -12.32290 -12.11090 -11.86653 -11.39003 -11.32309 -11.21466 -10.96196 -10.70242 -10.68394 -10.18341 -9.96082 -9.78501 -9.72134 -9.49920 -9.19154 -8.86005 -8.54431 -6.04993 -4.03156 0.19374 0.71706 1.11224 2.18228 2.54677 2.62540 3.13683 3.30471 3.33438 3.38316 3.41866 3.61695 3.81491 4.36441 4.44803 4.58480 4.62587 4.81339 4.89123 4.94466 4.97730 5.02385 5.05902 5.14211 5.16134 5.23366 5.25339 5.29387 5.46443 5.52271 5.58620 5.68682 5.80006 5.85408 5.88259 5.94221 6.17385 6.49234 6.59916 6.80894 6.86359 7.27535 7.39637 7.40501 7.78508 7.87928 8.52541 8.99891 9.57696 11.08377 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.002130 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.025870 B =13140.711474 C =13802.717193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.303 6.303 3 C 0.328 3.672 4 C -0.154 4.154 5 C 0.069 3.931 6 C 0.201 3.799 7 N -0.369 5.369 8 O 0.087 5.913 9 C 0.206 3.794 10 C -0.032 4.032 11 C -0.119 4.119 12 C -0.101 4.101 13 C -0.016 4.016 14 C -0.521 4.521 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 N -0.473 5.473 23 C -0.178 4.178 24 C 0.169 3.831 25 C -0.104 4.104 26 N -0.532 5.532 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.156 0.844 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.263 0.737 40 H 0.145 0.855 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.926 10.439 11.103 31.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.149 3.851 4 C -0.177 4.177 5 C 0.060 3.940 6 C -0.069 4.069 7 N -0.074 5.074 8 O 0.024 5.976 9 C -0.014 4.014 10 C -0.071 4.071 11 C -0.158 4.158 12 C -0.138 4.138 13 C -0.053 4.053 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.190 1.190 22 N -0.206 5.206 23 C -0.200 4.200 24 C 0.033 3.967 25 C -0.161 4.161 26 N -0.258 5.258 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.174 0.826 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.163 0.837 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -29.244 10.465 10.985 32.945 hybrid contribution 0.551 0.247 -0.988 1.158 sum -28.693 10.711 9.997 32.218 Atomic orbital electron populations 1.22895 0.76917 1.03186 1.02493 1.86280 1.23113 1.23922 1.87642 1.19521 0.88760 0.84712 0.92081 1.21016 0.92162 0.98815 1.05679 1.17261 0.85964 0.93363 0.97457 1.23571 0.95914 0.84491 1.02941 1.74856 0.89476 1.22996 1.20073 1.85305 1.19757 1.27317 1.65216 1.29172 0.98211 0.80554 0.93438 1.20593 0.84930 0.99864 1.01696 1.21785 0.99857 1.01945 0.92211 1.21459 0.92843 0.99179 1.00346 1.19582 0.97071 0.96407 0.92230 1.21148 1.03161 1.37116 0.94458 0.90970 1.25044 0.94691 0.94647 0.99203 1.69911 1.16280 1.41187 1.26894 0.86784 0.80542 0.78317 0.83669 1.20322 1.21418 1.19023 1.72039 0.98342 1.29562 1.20633 1.21807 0.93694 0.99196 1.05352 1.20800 0.91293 0.91991 0.92619 1.20760 0.99125 0.92623 1.03589 1.67067 1.41094 0.98383 1.19216 0.92185 0.88386 0.92218 0.82642 0.86855 0.87605 0.91392 0.91564 0.92234 0.92216 0.96600 0.97033 0.92749 0.83672 0.89874 0.90145 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.20 10.47 -18.77 -0.20 -3.40 16 3 C 0.33 3.74 7.49 -17.17 -0.13 3.62 16 4 C -0.15 -1.83 9.73 -38.93 -0.38 -2.20 16 5 C 0.07 0.83 5.91 -104.61 -0.62 0.21 16 6 C 0.20 2.71 7.83 -156.13 -1.22 1.49 16 7 N -0.37 -4.97 11.95 30.96 0.37 -4.60 16 8 O 0.09 1.11 11.29 18.04 0.20 1.31 16 9 C 0.21 2.56 7.75 -12.99 -0.10 2.45 16 10 C -0.03 -0.34 5.84 -27.88 -0.16 -0.50 16 11 C -0.12 -1.65 5.20 -26.73 -0.14 -1.79 16 12 C -0.10 -1.76 5.15 -26.73 -0.14 -1.90 16 13 C -0.02 -0.36 4.04 -27.88 -0.11 -0.47 16 14 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 15 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 16 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 18 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 22 N -0.47 -6.53 11.35 -9.89 -0.11 -6.65 16 23 C -0.18 -1.82 9.40 -39.11 -0.37 -2.19 16 24 C 0.17 1.58 6.77 -82.66 -0.56 1.02 16 25 C -0.10 -0.59 10.16 36.00 0.37 -0.23 16 26 N -0.53 -5.67 9.10 -9.62 -0.09 -5.76 16 27 H 0.06 0.42 8.10 -51.93 -0.42 -0.01 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.40 8.10 -51.92 -0.42 -0.02 16 30 H 0.16 1.82 7.96 -52.49 -0.42 1.41 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 38 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.15 1.30 7.96 -52.48 -0.42 0.88 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -32.84 371.68 -7.32 -40.16 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -6.25 Total: -4.47 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.94 Total: -12.24 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.94 Total: -43.93 kcal Atomic # 8 Polarization: -2.09 SS G_CDS: 0.01 Total: -2.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.84 -7.32 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350322365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.809 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds