Wall clock time and date at job start Tue Mar 31 2020 11:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35689 * 116.99901 * 2 1 4 4 C 1.38779 * 119.62577 * 180.25478 * 3 2 1 5 5 C 1.39452 * 118.96616 * 180.29558 * 4 3 2 6 6 C 1.48497 * 120.86820 * 179.73575 * 5 4 3 7 7 N 1.30724 * 126.41104 * 179.69705 * 6 5 4 8 8 O 1.21284 * 110.10631 * 179.97438 * 7 6 5 9 9 C 1.33670 * 110.02063 * 0.02562 * 8 7 6 10 10 C 1.50703 * 126.44245 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46912 * 270.02335 * 10 9 8 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00339 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00310 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00776 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99696 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47265 * 89.99852 * 18 16 14 20 20 H 1.48502 * 109.47140 * 209.99881 * 18 16 14 21 21 H 1.48501 * 109.46982 * 329.99994 * 18 16 14 22 22 N 1.30973 * 107.11487 * 0.23775 * 9 8 7 23 23 C 1.39861 * 118.26026 * 359.46217 * 5 4 3 24 24 C 1.37881 * 119.15526 * 0.27232 * 23 5 4 25 25 C 1.50697 * 119.52452 * 180.02562 * 24 23 5 26 26 N 1.31982 * 120.95310 * 0.02562 * 24 23 5 27 27 H 1.09000 * 109.47069 * 59.99745 * 1 2 3 28 28 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47119 * 300.00299 * 1 2 3 30 30 H 1.07991 * 120.51891 * 0.02838 * 4 3 2 31 31 H 1.09002 * 109.47152 * 150.02107 * 10 9 8 32 32 H 1.09001 * 109.46980 * 30.02207 * 10 9 8 33 33 H 1.09001 * 109.47194 * 299.99742 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99914 * 11 10 9 35 35 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 36 36 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 37 37 H 1.08992 * 109.47098 * 299.99158 * 13 12 11 38 38 H 1.09001 * 109.47583 * 60.00267 * 13 12 11 39 39 H 0.96996 * 120.00667 * 180.02562 * 17 16 14 40 40 H 1.08005 * 120.42221 * 180.29920 * 23 5 4 41 41 H 1.09000 * 109.47327 * 89.99747 * 25 24 23 42 42 H 1.09002 * 109.47316 * 210.00494 * 25 24 23 43 43 H 1.09002 * 109.47036 * 329.99872 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4313 1.2726 -0.0054 5 6 4.0501 2.5223 0.0010 6 6 5.5304 2.6395 0.0015 7 7 6.2209 3.7496 0.0016 8 8 7.4082 3.5020 0.0026 9 6 7.5999 2.1791 0.0026 10 6 8.9280 1.4670 0.0031 11 6 9.3783 1.2265 -1.4392 12 6 10.7264 0.5030 -1.4387 13 6 11.1769 0.2631 -2.8810 14 6 12.5051 -0.4490 -2.8805 15 1 12.9802 -0.7053 -1.9450 16 6 13.1134 -0.7744 -4.0743 17 7 14.2722 -1.3963 -4.0739 18 14 12.2915 -0.3318 -5.6923 19 1 12.7357 1.0191 -6.1200 20 1 12.6683 -1.3276 -6.7276 21 1 10.8170 -0.3352 -5.5157 22 7 6.4163 1.6182 -0.0036 23 6 3.2399 3.6624 0.0010 24 6 1.8693 3.5124 0.0005 25 6 0.9884 4.7352 -0.0001 26 7 1.3176 2.3135 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0218 0.3684 -0.0100 31 1 8.8274 0.5108 0.5166 32 1 9.6685 2.0795 0.5176 33 1 8.6378 0.6140 -1.9537 34 1 9.4789 2.1827 -1.9526 35 1 11.4671 1.1151 -0.9242 36 1 10.6254 -0.4533 -0.9253 37 1 10.4365 -0.3489 -3.3959 38 1 11.2782 1.2195 -3.3940 39 1 14.7003 -1.6249 -4.9137 40 1 3.6823 4.6477 0.0010 41 1 0.7765 5.0299 -1.0278 42 1 0.0538 4.5100 0.5135 43 1 1.4980 5.5503 0.5138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350322365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:07 Heat of formation + Delta-G solvation = 23.285818 kcal Electronic energy + Delta-G solvation = -24631.446063 eV Core-core repulsion = 20871.995748 eV Total energy + Delta-G solvation = -3759.450315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.76762 -41.86191 -39.23985 -37.55651 -37.00967 -35.30513 -34.28508 -33.51399 -32.71346 -31.25265 -29.35227 -27.89278 -27.48177 -26.25543 -24.81708 -23.80763 -23.24384 -21.88479 -21.75692 -19.47774 -19.29783 -18.78940 -18.33988 -17.92325 -17.15481 -17.07076 -16.46779 -16.32769 -16.10826 -15.59642 -15.27491 -15.17941 -14.72446 -14.54562 -14.32296 -14.06684 -13.74206 -13.69606 -13.56932 -13.38898 -13.15926 -13.10597 -12.85315 -12.73067 -12.45633 -12.29754 -12.10892 -12.07191 -11.78424 -11.72884 -11.33569 -11.28596 -11.18940 -10.96903 -10.72951 -10.52454 -9.62407 -8.26440 -6.29395 -0.69587 -0.06474 0.16578 1.22909 1.36892 1.38981 1.50378 1.65438 1.82293 2.26212 2.38026 2.52824 2.74920 3.08137 3.09367 3.54562 3.75592 3.84214 3.99522 4.02302 4.12311 4.15223 4.37619 4.40842 4.41238 4.47756 4.57187 4.62193 4.72158 4.75551 4.76290 4.80611 4.85300 4.86322 4.98024 4.99643 5.13408 5.19045 5.26085 5.30959 5.63795 5.69733 5.72176 6.07616 6.33157 6.62015 6.79876 6.90738 7.35287 8.90148 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.002130 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.025870 B =13140.711474 C =13802.717193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.321 3.679 4 C -0.168 4.168 5 C 0.052 3.948 6 C 0.195 3.805 7 N -0.377 5.377 8 O 0.087 5.913 9 C 0.212 3.788 10 C -0.024 4.024 11 C -0.108 4.108 12 C -0.094 4.094 13 C -0.018 4.018 14 C -0.529 4.529 15 H 0.037 0.963 16 C 0.000 4.000 17 N -0.952 5.952 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.249 1.249 22 N -0.493 5.493 23 C -0.179 4.179 24 C 0.170 3.830 25 C -0.101 4.101 26 N -0.536 5.536 27 H 0.060 0.940 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.148 0.852 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.158 0.842 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.150 12.089 10.971 34.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.224 6.224 3 C 0.142 3.858 4 C -0.191 4.191 5 C 0.043 3.957 6 C -0.075 4.075 7 N -0.083 5.083 8 O 0.025 5.975 9 C -0.008 4.008 10 C -0.062 4.062 11 C -0.147 4.147 12 C -0.131 4.131 13 C -0.056 4.056 14 C -0.567 4.567 15 H 0.055 0.945 16 C -0.196 4.196 17 N -0.594 5.594 18 Si 0.772 3.228 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.172 1.172 22 N -0.226 5.226 23 C -0.200 4.200 24 C 0.034 3.966 25 C -0.158 4.158 26 N -0.263 5.263 27 H 0.079 0.921 28 H 0.141 0.859 29 H 0.080 0.920 30 H 0.166 0.834 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.175 0.825 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -31.487 12.117 10.870 35.446 hybrid contribution 1.240 -0.288 -0.873 1.544 sum -30.247 11.829 9.997 33.981 Atomic orbital electron populations 1.23132 0.75202 1.04913 1.02618 1.86263 1.24892 1.23755 1.87514 1.19625 0.88768 0.85279 0.92146 1.20987 0.92560 0.98642 1.06905 1.17432 0.85636 0.94142 0.98441 1.23837 0.96558 0.84409 1.02712 1.74834 0.89713 1.23112 1.20607 1.85286 1.19519 1.27470 1.65203 1.29384 0.98322 0.80404 0.92664 1.20591 0.84715 1.00987 0.99922 1.21563 0.97342 1.01456 0.94363 1.21304 0.95038 0.99928 0.96857 1.19590 0.94254 0.95789 0.95924 1.21577 1.05108 1.36882 0.93101 0.94500 1.26028 0.95330 0.94752 1.03507 1.70068 1.18206 1.43088 1.28000 0.85687 0.80261 0.78311 0.78546 1.19178 1.21307 1.17212 1.72046 0.99016 1.30148 1.21355 1.21998 0.93986 0.99122 1.04935 1.21421 0.91583 0.92691 0.90903 1.20888 0.98836 0.91364 1.04740 1.67178 1.41047 0.98632 1.19395 0.92120 0.85937 0.91955 0.83374 0.85656 0.84832 0.92158 0.91021 0.91635 0.92330 0.96699 0.96345 0.92658 0.82470 0.88574 0.89522 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 113.37 1.18 1.64 16 2 O -0.32 -6.61 10.47 -90.08 -0.94 -7.56 16 3 C 0.32 7.24 7.49 84.76 0.63 7.88 16 4 C -0.17 -4.03 9.73 22.69 0.22 -3.81 16 5 C 0.05 1.25 5.91 -19.86 -0.12 1.14 16 6 C 0.19 5.13 7.83 137.33 1.08 6.21 16 7 N -0.38 -9.73 11.95 -59.20 -0.71 -10.43 16 8 O 0.09 2.09 11.29 74.61 0.84 2.94 16 9 C 0.21 4.89 7.75 88.36 0.68 5.57 16 10 C -0.02 -0.44 5.84 29.85 0.17 -0.27 16 11 C -0.11 -2.75 5.20 30.59 0.16 -2.59 16 12 C -0.09 -3.13 5.15 30.59 0.16 -2.97 16 13 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 14 C -0.53 -29.85 9.66 25.60 0.25 -29.60 16 15 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 16 C 0.00 0.01 5.47 84.65 0.46 0.47 16 17 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 18 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 22 N -0.49 -13.20 11.35 -302.57 -3.43 -16.63 16 23 C -0.18 -3.43 9.40 22.58 0.21 -3.22 16 24 C 0.17 2.92 6.77 42.45 0.29 3.21 16 25 C -0.10 -0.90 10.16 71.23 0.72 -0.18 16 26 N -0.54 -10.90 9.10 -297.20 -2.71 -13.61 16 27 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 28 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.77 8.10 -2.38 -0.02 0.75 16 30 H 0.15 3.63 7.96 -2.91 -0.02 3.60 16 31 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.13 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 38 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.16 2.55 7.96 -2.91 -0.02 2.53 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.10 0.53 8.07 -2.39 -0.02 0.52 16 Total: -1.00 -72.01 371.68 2.41 -69.59 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.96 Total: 6.12 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 6.22 Total: -17.21 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -6.55 Total: -100.07 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.10 Total: -4.62 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -72.01 2.41 -69.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350322365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.880 kcal (2) G-P(sol) polarization free energy of solvation -72.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds