Wall clock time and date at job start Tue Mar 31 2020 11:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38142 * 119.96376 * 2 1 4 4 C 1.38845 * 119.92778 * 179.97438 * 3 2 1 5 5 N 1.39943 * 120.06729 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00058 * 144.90866 * 5 4 3 7 7 O 1.21589 * 119.99874 * 4.61840 * 6 5 4 8 8 N 1.34781 * 119.99919 * 184.61245 * 6 5 4 9 9 C 1.46499 * 119.99487 * 180.02562 * 8 6 5 10 10 C 1.50710 * 109.46828 * 180.02562 * 9 8 6 11 11 O 1.21293 * 119.99708 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00033 * 180.02562 * 10 9 8 13 13 C 1.37093 * 119.99780 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00348 * 0.02562 * 13 12 10 15 15 C 1.38952 * 119.99740 * 179.97438 * 13 12 10 16 16 N 1.31404 * 120.00318 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99778 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46758 * 60.00601 * 17 15 13 19 19 H 1.48497 * 109.47041 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47159 * 300.00170 * 17 15 13 21 21 C 1.38882 * 119.85999 * 359.97438 * 4 3 2 22 22 C 1.38094 * 119.93181 * 0.02562 * 21 4 3 23 23 C 1.38255 * 119.96614 * 179.72368 * 2 1 3 24 24 C 1.50698 * 119.92532 * 0.02562 * 23 2 1 25 25 C 1.53000 * 117.49471 * 188.62068 * 24 23 2 26 26 C 1.52995 * 60.00026 * 252.50794 * 25 24 23 27 27 H 1.08997 * 109.46807 * 89.99701 * 1 2 3 28 28 H 1.09002 * 109.46785 * 330.00197 * 1 2 3 29 29 H 1.09000 * 109.47045 * 209.99898 * 1 2 3 30 30 H 1.07999 * 120.03423 * 359.95832 * 3 2 1 31 31 H 0.97006 * 120.00191 * 324.90143 * 5 4 3 32 32 H 0.96994 * 119.99757 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.47651 * 299.99791 * 9 8 6 34 34 H 1.08999 * 109.47586 * 60.00573 * 9 8 6 35 35 H 0.96996 * 119.99707 * 359.97438 * 12 10 9 36 36 H 0.97001 * 120.00573 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.03779 * 180.02562 * 21 4 3 38 38 H 1.07998 * 119.96634 * 180.02562 * 22 21 4 39 39 H 1.08994 * 115.55215 * 334.32547 * 24 23 2 40 40 H 1.09003 * 117.50417 * 359.97438 * 25 24 23 41 41 H 1.09008 * 117.49960 * 145.01933 * 25 24 23 42 42 H 1.08997 * 117.50122 * 252.50677 * 26 25 24 43 43 H 1.09005 * 117.50222 * 107.49002 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1968 0.0000 4 6 3.5855 1.1959 0.0005 5 7 4.2874 2.4066 0.0011 6 6 5.4513 2.5104 0.6725 7 8 5.9340 1.5310 1.2075 8 7 6.0803 3.6999 0.7509 9 6 7.3458 3.8125 1.4803 10 6 7.8364 5.2362 1.4180 11 8 7.1926 6.0740 0.8224 12 7 8.9912 5.5781 2.0231 13 6 9.4377 6.8730 1.9659 14 1 8.8641 7.6192 1.4364 15 6 10.6280 7.2256 2.5903 16 7 11.3257 6.3178 3.2351 17 14 11.2369 8.9899 2.5118 18 1 10.2285 9.8893 3.1278 19 1 12.5198 9.1041 3.2508 20 1 11.4466 9.3785 1.0940 21 6 4.2762 -0.0090 0.0016 22 6 3.5806 -1.2019 0.0016 23 6 2.1976 -1.1977 0.0058 24 6 1.4417 -2.5014 0.0115 25 6 2.2481 -3.7846 0.2211 26 6 1.6748 -3.4583 -1.1593 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 1.6570 2.1321 -0.0007 31 1 3.9362 3.1711 -0.4819 32 1 5.6950 4.4812 0.3244 33 1 7.1921 3.5269 2.5210 34 1 8.0860 3.1527 1.0279 35 1 9.5062 4.9079 2.4991 36 1 12.1568 6.5638 3.6707 37 1 5.3562 -0.0130 0.0025 38 1 4.1172 -2.1392 0.0029 39 1 0.4390 -2.4615 0.4370 40 1 3.3254 -3.6860 0.3545 41 1 1.7759 -4.5893 0.7848 42 1 0.8255 -4.0483 -1.5039 43 1 2.3748 -3.1449 -1.9339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351147496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:21 Heat of formation + Delta-G solvation = -37.200118 kcal Electronic energy + Delta-G solvation = -24845.125775 eV Core-core repulsion = 21083.052594 eV Total energy + Delta-G solvation = -3762.073182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83711 -40.62061 -39.97623 -37.82708 -36.28030 -35.63796 -35.38869 -33.44006 -33.32495 -30.81962 -28.98319 -27.75451 -26.46596 -24.63497 -23.48212 -22.94576 -21.82192 -21.44738 -20.95082 -20.10972 -19.71752 -18.36081 -17.52678 -17.33646 -16.93089 -16.67675 -16.38861 -16.20999 -15.81348 -15.71296 -15.44671 -15.15209 -14.91766 -14.58344 -14.03747 -13.98845 -13.74784 -13.71837 -13.54252 -13.22928 -13.01993 -12.90205 -12.47596 -12.42598 -12.14344 -12.06924 -11.99250 -11.92637 -11.56952 -11.34294 -11.19494 -10.78025 -10.57786 -10.27473 -10.09916 -9.65605 -8.84828 -8.51458 -6.01908 0.29115 0.45767 1.37699 1.39371 1.45042 1.54692 1.87187 1.96452 2.27757 2.69233 2.96528 3.15625 3.18618 3.22144 3.69513 3.90678 3.99695 4.06564 4.16888 4.18277 4.29977 4.36590 4.38758 4.42583 4.53585 4.63660 4.81282 4.87813 4.89804 4.96009 5.05118 5.12580 5.20462 5.28909 5.31810 5.36786 5.37626 5.45573 5.61663 5.76695 5.87673 5.91433 6.11767 6.46842 6.86339 7.02473 7.34590 7.44027 7.92971 8.65076 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038322 B = 0.001947 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.478123 B =14375.042204 C =14916.789738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.145 4.145 4 C 0.148 3.852 5 N -0.673 5.673 6 C 0.705 3.295 7 O -0.610 6.610 8 N -0.716 5.716 9 C 0.141 3.859 10 C 0.433 3.567 11 O -0.624 6.624 12 N -0.558 5.558 13 C -0.338 4.338 14 H 0.087 0.913 15 C -0.011 4.011 16 N -0.915 5.915 17 Si 0.998 3.002 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.144 4.144 22 C -0.108 4.108 23 C -0.076 4.076 24 C -0.123 4.123 25 C -0.182 4.182 26 C -0.163 4.163 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.422 0.578 32 H 0.413 0.587 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.399 0.601 36 H 0.280 0.720 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.015 -16.905 -7.141 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.067 4.067 3 C -0.165 4.165 4 C 0.054 3.946 5 N -0.322 5.322 6 C 0.405 3.595 7 O -0.490 6.490 8 N -0.374 5.374 9 C 0.013 3.987 10 C 0.220 3.780 11 O -0.512 6.512 12 N -0.193 5.193 13 C -0.468 4.468 14 H 0.105 0.895 15 C -0.212 4.212 16 N -0.555 5.555 17 Si 0.821 3.179 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.195 1.195 21 C -0.164 4.164 22 C -0.126 4.126 23 C -0.077 4.077 24 C -0.141 4.141 25 C -0.219 4.219 26 C -0.200 4.200 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.164 0.836 31 H 0.260 0.740 32 H 0.251 0.749 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.736 -17.130 -6.908 27.770 hybrid contribution 0.961 1.330 -0.002 1.641 sum -19.775 -15.800 -6.910 26.238 Atomic orbital electron populations 1.20871 0.88744 1.03751 1.03388 1.19785 0.97492 0.91155 0.98271 1.20965 0.90999 0.99622 1.04955 1.17688 0.91212 0.84605 1.01137 1.42363 1.22106 1.14131 1.53583 1.15888 0.80900 0.83233 0.79477 1.90895 1.67710 1.37254 1.53148 1.44659 1.24327 1.10313 1.58076 1.20631 0.85984 0.93662 0.98425 1.20370 0.83160 0.90486 0.83972 1.90470 1.58731 1.52954 1.49040 1.41821 1.19865 1.10795 1.46864 1.19707 1.06269 0.86793 1.33986 0.89483 1.26142 0.95757 1.04051 0.95217 1.69670 1.16037 1.35783 1.34030 0.84919 0.77629 0.76695 0.78686 1.19475 1.19658 1.19488 1.21239 1.00557 0.91938 1.02691 1.21036 0.94142 0.97497 0.99919 1.19199 0.92586 0.94162 1.01720 1.21113 1.00376 0.87520 1.05080 1.23159 1.00089 0.98382 1.00288 1.23064 1.03776 1.01808 0.91325 0.89884 0.90743 0.90181 0.83576 0.74002 0.74927 0.88849 0.88735 0.76670 0.91044 0.86536 0.85089 0.85293 0.89086 0.87101 0.86806 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.61 71.24 0.68 -0.55 16 2 C -0.07 -1.20 5.88 -19.88 -0.12 -1.31 16 3 C -0.14 -2.90 9.62 22.39 0.22 -2.68 16 4 C 0.15 3.78 6.30 38.15 0.24 4.02 16 5 N -0.67 -16.90 5.34 -317.18 -1.69 -18.60 16 6 C 0.70 22.78 8.41 179.05 1.51 24.29 16 7 O -0.61 -23.60 13.77 -4.00 -0.06 -23.66 16 8 N -0.72 -23.40 5.53 -482.27 -2.67 -26.07 16 9 C 0.14 5.14 6.15 85.64 0.53 5.67 16 10 C 0.43 19.80 7.85 87.66 0.69 20.49 16 11 O -0.62 -31.79 15.24 -3.07 -0.05 -31.84 16 12 N -0.56 -27.87 5.29 -306.98 -1.62 -29.49 16 13 C -0.34 -18.53 9.68 84.04 0.81 -17.72 16 14 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 15 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 16 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 17 Si 1.00 41.57 29.55 68.60 2.03 43.59 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 21 C -0.14 -4.03 8.70 22.39 0.19 -3.83 16 22 C -0.11 -2.48 9.29 22.25 0.21 -2.28 16 23 C -0.08 -1.47 5.61 -19.85 -0.11 -1.58 16 24 C -0.12 -1.72 5.51 -11.54 -0.06 -1.78 16 25 C -0.18 -2.32 9.86 30.59 0.30 -2.02 16 26 C -0.16 -1.92 10.16 30.59 0.31 -1.61 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 29 H 0.08 0.72 6.04 -2.39 -0.01 0.71 16 30 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.42 7.83 8.84 -92.70 -0.82 7.01 16 32 H 0.41 12.91 7.46 -92.71 -0.69 12.22 16 33 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 36 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 37 H 0.12 3.82 6.22 -2.91 -0.02 3.80 16 38 H 0.13 2.67 6.02 -2.91 -0.02 2.65 16 39 H 0.13 1.38 6.23 -2.39 -0.01 1.37 16 40 H 0.09 1.30 6.18 -2.39 -0.01 1.29 16 41 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -68.12 362.56 0.93 -67.18 By element: Atomic # 1 Polarization: 49.27 SS G_CDS: -1.15 Total: 48.12 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.86 Total: 19.00 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -5.70 Total: -122.40 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -0.10 Total: -55.49 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -68.12 0.93 -67.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351147496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.982 kcal (2) G-P(sol) polarization free energy of solvation -68.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds