Wall clock time and date at job start Tue Mar 31 2020 11:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31374 * 119.64991 * 2 1 4 4 C 1.32755 * 121.80643 * 179.97438 * 3 2 1 5 5 C 1.48263 * 119.56098 * 179.72372 * 4 3 2 6 6 O 1.21504 * 119.99723 * 172.25414 * 5 4 3 7 7 N 1.34773 * 120.00212 * 352.25536 * 5 4 3 8 8 C 1.46497 * 120.00357 * 182.55972 * 7 5 4 9 9 C 1.46502 * 119.99924 * 2.56159 * 7 5 4 10 10 C 1.39366 * 120.87761 * 359.97438 * 4 3 2 11 11 C 1.38379 * 119.19804 * 0.02562 * 10 4 3 12 12 C 1.39847 * 119.64816 * 179.97438 * 2 1 3 13 13 C 1.47815 * 120.46927 * 0.02562 * 12 2 1 14 14 O 1.21594 * 119.99651 * 308.04345 * 13 12 2 15 15 N 1.34773 * 120.00351 * 128.04206 * 13 12 2 16 16 C 1.36714 * 119.99972 * 174.10176 * 15 13 12 17 17 H 1.07992 * 119.99547 * 129.27243 * 16 15 13 18 18 C 1.39159 * 119.99860 * 309.26971 * 16 15 13 19 19 N 1.31290 * 120.00081 * 182.08387 * 18 16 15 20 20 Si 1.86803 * 120.00517 * 2.08938 * 18 16 15 21 21 H 1.48496 * 109.47181 * 94.48201 * 20 18 16 22 22 H 1.48493 * 109.47234 * 214.49077 * 20 18 16 23 23 H 1.48506 * 109.46711 * 334.48510 * 20 18 16 24 24 C 1.46503 * 120.00055 * 354.10575 * 15 13 12 25 25 C 1.52992 * 117.49850 * 193.13480 * 24 15 13 26 26 C 1.52996 * 117.49954 * 124.50908 * 24 15 13 27 27 H 1.09001 * 109.47298 * 95.68312 * 1 2 3 28 28 H 1.09009 * 109.46911 * 215.68616 * 1 2 3 29 29 H 1.09001 * 109.47272 * 335.68123 * 1 2 3 30 30 H 1.09003 * 109.46795 * 89.99651 * 8 7 5 31 31 H 1.08995 * 109.47375 * 209.99892 * 8 7 5 32 32 H 1.08998 * 109.47201 * 330.00079 * 8 7 5 33 33 H 1.09002 * 109.47472 * 83.54118 * 9 7 5 34 34 H 1.09002 * 109.47216 * 203.54749 * 9 7 5 35 35 H 1.09005 * 109.46813 * 323.54332 * 9 7 5 36 36 H 1.07994 * 120.40451 * 179.97438 * 10 4 3 37 37 H 1.07993 * 120.82384 * 179.97438 * 11 10 4 38 38 H 0.96994 * 120.00348 * 180.02562 * 19 18 16 39 39 H 1.09007 * 115.54298 * 338.84533 * 24 15 13 40 40 H 1.08992 * 117.50253 * 0.02562 * 25 24 15 41 41 H 1.09005 * 117.49712 * 145.01649 * 25 24 15 42 42 H 1.08998 * 117.50005 * 214.97895 * 26 24 15 43 43 H 1.09000 * 117.50211 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1569 1.1417 0.0000 4 6 3.4835 1.1917 0.0005 5 6 4.1659 2.5079 -0.0057 6 8 5.3711 2.5680 0.1365 7 7 3.4494 3.6377 -0.1691 8 6 4.1294 4.9338 -0.2315 9 6 1.9905 3.5697 -0.2843 10 6 4.2432 0.0233 0.0016 11 6 3.5985 -1.2011 0.0016 12 6 2.1987 -1.2154 0.0005 13 6 1.4623 -2.4970 0.0005 14 8 0.5964 -2.7006 0.8296 15 7 1.7505 -3.4399 -0.9183 16 6 1.1567 -4.6692 -0.8457 17 1 0.6733 -5.0875 -1.7160 18 6 1.1754 -5.3814 0.3497 19 7 0.6412 -6.5792 0.4087 20 14 1.9605 -4.6331 1.8707 21 1 0.9175 -3.9606 2.6861 22 1 2.6028 -5.7042 2.6740 23 1 2.9853 -3.6397 1.4608 24 6 2.7001 -3.1475 -1.9949 25 6 2.7582 -4.1250 -3.1704 26 6 3.8997 -4.0840 -2.1524 27 1 -0.3634 -0.1018 -1.0226 28 1 -0.3633 -0.8348 0.5995 29 1 -0.3634 0.9365 0.4232 30 1 4.3830 5.1615 -1.2669 31 1 3.4708 5.7089 0.1602 32 1 5.0405 4.8952 0.3656 33 1 1.5488 3.5309 0.7114 34 1 1.6260 4.4525 -0.8095 35 1 1.7114 2.6749 -0.8408 36 1 5.3220 0.0729 0.0016 37 1 4.1613 -2.1228 0.0020 38 1 0.6539 -7.0755 1.2419 39 1 2.8551 -2.0903 -2.2107 40 1 2.0896 -4.9854 -3.1430 41 1 2.9513 -3.7111 -4.1601 42 1 4.8437 -3.6431 -2.4724 43 1 3.9827 -4.9174 -1.4548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352739860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:17 Heat of formation + Delta-G solvation = 32.988247 kcal Electronic energy + Delta-G solvation = -27365.847694 eV Core-core repulsion = 23606.818108 eV Total energy + Delta-G solvation = -3759.029586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95354 -39.66814 -38.48596 -36.60785 -35.74297 -33.26503 -32.96443 -32.50080 -31.49880 -28.32632 -27.79219 -26.82639 -25.35984 -23.98071 -22.29897 -21.87614 -21.62727 -20.07007 -19.73658 -17.76084 -17.42534 -16.64282 -16.52088 -16.00758 -15.75923 -15.58842 -14.95387 -14.37792 -14.28595 -14.01462 -13.76993 -13.39447 -13.37194 -13.28948 -13.17557 -12.77027 -12.71708 -12.65314 -12.41269 -12.13444 -12.02754 -11.72843 -11.56981 -11.22707 -10.92098 -10.48226 -10.38145 -10.20102 -10.11588 -9.90535 -9.64213 -9.33062 -9.02776 -8.90661 -8.65851 -8.63399 -7.63463 -6.39098 -4.28470 0.53069 1.24787 2.57228 2.82978 3.10441 3.29435 3.48796 3.63664 3.83100 3.94506 4.15839 4.29931 4.51739 4.57548 4.86074 4.86801 5.05633 5.07602 5.11247 5.15633 5.22569 5.35189 5.38515 5.50732 5.56768 5.58704 5.61626 5.68155 5.81544 5.89434 6.00047 6.05973 6.09846 6.17308 6.20045 6.35802 6.42021 6.58109 6.71952 6.77718 7.13292 7.60080 7.67329 7.81929 8.03617 8.49438 8.62104 9.13648 9.50572 10.62522 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.004273 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.693819 B = 6550.813744 C = 6921.633791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.160 3.840 3 N -0.456 5.456 4 C 0.074 3.926 5 C 0.573 3.427 6 O -0.538 6.538 7 N -0.605 5.605 8 C 0.084 3.916 9 C 0.075 3.925 10 C -0.119 4.119 11 C -0.056 4.056 12 C -0.126 4.126 13 C 0.496 3.504 14 O -0.536 6.536 15 N -0.418 5.418 16 C -0.333 4.333 17 H 0.101 0.899 18 C 0.082 3.918 19 N -0.861 5.861 20 Si 0.932 3.068 21 H -0.262 1.262 22 H -0.313 1.313 23 H -0.285 1.285 24 C 0.056 3.944 25 C -0.171 4.171 26 C -0.193 4.193 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.277 0.723 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 16.541 -4.372 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.019 3.981 3 N -0.169 5.169 4 C -0.063 4.063 5 C 0.360 3.640 6 O -0.415 6.415 7 N -0.337 5.337 8 C -0.059 4.059 9 C -0.068 4.068 10 C -0.140 4.140 11 C -0.082 4.082 12 C -0.131 4.131 13 C 0.287 3.713 14 O -0.421 6.421 15 N -0.136 5.136 16 C -0.460 4.460 17 H 0.119 0.881 18 C -0.127 4.127 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.188 1.188 22 H -0.244 1.244 23 H -0.211 1.211 24 C -0.049 4.049 25 C -0.209 4.209 26 C -0.231 4.231 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.467 17.091 -3.814 18.072 hybrid contribution 0.914 -0.478 0.747 1.273 sum 5.381 16.613 -3.067 17.730 Atomic orbital electron populations 1.20981 0.87520 1.04938 1.03911 1.21459 0.97446 0.86390 0.92798 1.67849 1.08118 1.28113 1.12839 1.20980 0.89989 0.93586 1.01767 1.17983 0.86053 0.83273 0.76673 1.90755 1.13678 1.86658 1.50404 1.47609 1.08718 1.06161 1.71230 1.21692 0.98537 0.83664 1.01978 1.22455 0.77628 1.03838 1.02829 1.21922 1.01899 0.91273 0.98917 1.21922 0.93391 0.98654 0.94212 1.21424 0.94589 0.96560 1.00560 1.18031 0.84580 0.82400 0.86323 1.90511 1.33641 1.78443 1.39536 1.43036 1.35818 1.11414 1.23300 1.18811 1.35870 0.91066 1.00225 0.88125 1.25510 0.93821 0.93980 0.99440 1.69607 1.40800 1.10908 1.28184 0.85898 0.78676 0.76609 0.82257 1.18811 1.24370 1.21106 1.21939 0.94597 0.95067 0.93302 1.23135 1.02170 1.02829 0.92756 1.23265 0.92502 1.03748 1.03618 0.90310 0.87611 0.90687 0.92611 0.91091 0.90486 0.92432 0.92505 0.87034 0.83425 0.83516 0.91335 0.87220 0.87073 0.89418 0.89360 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.66 36.00 0.35 -1.39 16 2 C 0.16 2.64 6.82 -82.19 -0.56 2.08 16 3 N -0.46 -6.84 5.92 -5.73 -0.03 -6.87 16 4 C 0.07 1.14 6.63 -82.93 -0.55 0.59 16 5 C 0.57 8.52 7.66 -12.14 -0.09 8.43 16 6 O -0.54 -9.11 15.90 5.36 0.09 -9.02 16 7 N -0.60 -7.26 3.27 -190.49 -0.62 -7.89 16 8 C 0.08 0.76 10.43 59.85 0.62 1.39 16 9 C 0.07 0.76 9.30 59.85 0.56 1.32 16 10 C -0.12 -1.79 9.61 -39.11 -0.38 -2.17 16 11 C -0.06 -0.92 8.14 -38.88 -0.32 -1.24 16 12 C -0.13 -2.34 4.69 -104.72 -0.49 -2.83 16 13 C 0.50 11.17 3.98 -12.34 -0.05 11.12 16 14 O -0.54 -13.80 10.78 5.28 0.06 -13.74 16 15 N -0.42 -9.38 2.55 -108.82 -0.28 -9.66 16 16 C -0.33 -8.71 8.44 -15.03 -0.13 -8.84 16 17 H 0.10 2.77 7.13 -52.49 -0.37 2.39 16 18 C 0.08 2.28 5.32 -17.44 -0.09 2.19 16 19 N -0.86 -24.72 13.95 55.51 0.77 -23.94 16 20 Si 0.93 23.97 24.28 -169.99 -4.13 19.85 16 21 H -0.26 -7.15 6.70 56.52 0.38 -6.77 16 22 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 23 H -0.28 -6.95 6.32 56.52 0.36 -6.59 16 24 C 0.06 1.01 4.91 -67.93 -0.33 0.67 16 25 C -0.17 -2.79 9.86 -26.73 -0.26 -3.05 16 26 C -0.19 -3.12 10.19 -26.73 -0.27 -3.39 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.11 1.89 5.82 -51.92 -0.30 1.59 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 32 H 0.08 0.78 7.39 -51.93 -0.38 0.39 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.43 8.02 -51.93 -0.42 0.02 16 35 H 0.11 1.29 5.26 -52.12 -0.27 1.01 16 36 H 0.15 2.00 7.65 -52.49 -0.40 1.60 16 37 H 0.15 2.38 7.66 -52.49 -0.40 1.98 16 38 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.11 1.76 6.57 -51.93 -0.34 1.42 16 40 H 0.11 2.07 6.62 -51.93 -0.34 1.72 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -31.75 347.89 -6.72 -38.47 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.82 Total: 2.71 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.00 Total: 4.86 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.16 Total: -48.36 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.14 Total: -22.77 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.13 Total: 19.85 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.75 -6.72 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352739860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.459 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds