Wall clock time and date at job start Tue Mar 31 2020 11:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31374 * 119.64991 * 2 1 4 4 C 1.32755 * 121.80643 * 179.97438 * 3 2 1 5 5 C 1.48263 * 119.56098 * 179.72372 * 4 3 2 6 6 O 1.21504 * 119.99723 * 172.25414 * 5 4 3 7 7 N 1.34773 * 120.00212 * 352.25536 * 5 4 3 8 8 C 1.46497 * 120.00357 * 182.55972 * 7 5 4 9 9 C 1.46502 * 119.99924 * 2.56159 * 7 5 4 10 10 C 1.39366 * 120.87761 * 359.97438 * 4 3 2 11 11 C 1.38379 * 119.19804 * 0.02562 * 10 4 3 12 12 C 1.39847 * 119.64816 * 179.97438 * 2 1 3 13 13 C 1.47815 * 120.46927 * 0.02562 * 12 2 1 14 14 O 1.21594 * 119.99651 * 308.04345 * 13 12 2 15 15 N 1.34773 * 120.00351 * 128.04206 * 13 12 2 16 16 C 1.36714 * 119.99972 * 174.10176 * 15 13 12 17 17 H 1.07992 * 119.99547 * 129.27243 * 16 15 13 18 18 C 1.39159 * 119.99860 * 309.26971 * 16 15 13 19 19 N 1.31290 * 120.00081 * 182.08387 * 18 16 15 20 20 Si 1.86803 * 120.00517 * 2.08938 * 18 16 15 21 21 H 1.48496 * 109.47181 * 94.48201 * 20 18 16 22 22 H 1.48493 * 109.47234 * 214.49077 * 20 18 16 23 23 H 1.48506 * 109.46711 * 334.48510 * 20 18 16 24 24 C 1.46503 * 120.00055 * 354.10575 * 15 13 12 25 25 C 1.52992 * 117.49850 * 193.13480 * 24 15 13 26 26 C 1.52996 * 117.49954 * 124.50908 * 24 15 13 27 27 H 1.09001 * 109.47298 * 95.68312 * 1 2 3 28 28 H 1.09009 * 109.46911 * 215.68616 * 1 2 3 29 29 H 1.09001 * 109.47272 * 335.68123 * 1 2 3 30 30 H 1.09003 * 109.46795 * 89.99651 * 8 7 5 31 31 H 1.08995 * 109.47375 * 209.99892 * 8 7 5 32 32 H 1.08998 * 109.47201 * 330.00079 * 8 7 5 33 33 H 1.09002 * 109.47472 * 83.54118 * 9 7 5 34 34 H 1.09002 * 109.47216 * 203.54749 * 9 7 5 35 35 H 1.09005 * 109.46813 * 323.54332 * 9 7 5 36 36 H 1.07994 * 120.40451 * 179.97438 * 10 4 3 37 37 H 1.07993 * 120.82384 * 179.97438 * 11 10 4 38 38 H 0.96994 * 120.00348 * 180.02562 * 19 18 16 39 39 H 1.09007 * 115.54298 * 338.84533 * 24 15 13 40 40 H 1.08992 * 117.50253 * 0.02562 * 25 24 15 41 41 H 1.09005 * 117.49712 * 145.01649 * 25 24 15 42 42 H 1.08998 * 117.50005 * 214.97895 * 26 24 15 43 43 H 1.09000 * 117.50211 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1569 1.1417 0.0000 4 6 3.4835 1.1917 0.0005 5 6 4.1659 2.5079 -0.0057 6 8 5.3711 2.5680 0.1365 7 7 3.4494 3.6377 -0.1691 8 6 4.1294 4.9338 -0.2315 9 6 1.9905 3.5697 -0.2843 10 6 4.2432 0.0233 0.0016 11 6 3.5985 -1.2011 0.0016 12 6 2.1987 -1.2154 0.0005 13 6 1.4623 -2.4970 0.0005 14 8 0.5964 -2.7006 0.8296 15 7 1.7505 -3.4399 -0.9183 16 6 1.1567 -4.6692 -0.8457 17 1 0.6733 -5.0875 -1.7160 18 6 1.1754 -5.3814 0.3497 19 7 0.6412 -6.5792 0.4087 20 14 1.9605 -4.6331 1.8707 21 1 0.9175 -3.9606 2.6861 22 1 2.6028 -5.7042 2.6740 23 1 2.9853 -3.6397 1.4608 24 6 2.7001 -3.1475 -1.9949 25 6 2.7582 -4.1250 -3.1704 26 6 3.8997 -4.0840 -2.1524 27 1 -0.3634 -0.1018 -1.0226 28 1 -0.3633 -0.8348 0.5995 29 1 -0.3634 0.9365 0.4232 30 1 4.3830 5.1615 -1.2669 31 1 3.4708 5.7089 0.1602 32 1 5.0405 4.8952 0.3656 33 1 1.5488 3.5309 0.7114 34 1 1.6260 4.4525 -0.8095 35 1 1.7114 2.6749 -0.8408 36 1 5.3220 0.0729 0.0016 37 1 4.1613 -2.1228 0.0020 38 1 0.6539 -7.0755 1.2419 39 1 2.8551 -2.0903 -2.2107 40 1 2.0896 -4.9854 -3.1430 41 1 2.9513 -3.7111 -4.1601 42 1 4.8437 -3.6431 -2.4724 43 1 3.9827 -4.9174 -1.4548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352739860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:17 Heat of formation + Delta-G solvation = 12.498326 kcal Electronic energy + Delta-G solvation = -27366.736204 eV Core-core repulsion = 23606.818108 eV Total energy + Delta-G solvation = -3759.918095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.26336 -41.07792 -39.83890 -38.19216 -36.74841 -35.09445 -34.29382 -33.88921 -33.25625 -29.19646 -29.08091 -27.97295 -26.90998 -25.32725 -23.65568 -23.21955 -23.02712 -21.54662 -21.07700 -19.41571 -18.58427 -18.17924 -17.79047 -17.53258 -17.04731 -16.84646 -16.47461 -15.65627 -15.56262 -15.45565 -15.29953 -15.04345 -14.77283 -14.64108 -14.51377 -14.21938 -13.89447 -13.61456 -13.45074 -13.29789 -13.22015 -13.10225 -12.90151 -12.71147 -12.49572 -12.26046 -12.06070 -11.67643 -11.52146 -11.36216 -11.19194 -10.90744 -10.68976 -10.30026 -10.16470 -9.66516 -9.41881 -8.48910 -6.37740 -0.76287 -0.00764 1.11092 1.19562 1.37523 1.46919 1.82957 1.87459 2.28055 2.42033 2.60976 2.82436 2.86109 3.17349 3.42730 3.53336 3.59689 3.85948 3.99071 4.03887 4.11217 4.26098 4.36111 4.42364 4.45271 4.55867 4.61918 4.70502 4.78524 4.86724 4.89231 4.90344 4.91531 4.96882 5.07768 5.20135 5.24398 5.40574 5.44439 5.58819 5.59923 5.82148 6.13730 6.45210 6.58963 6.74199 6.93705 7.14439 7.64825 8.56055 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.004273 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.693819 B = 6550.813744 C = 6921.633791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.161 3.839 3 N -0.440 5.440 4 C 0.079 3.921 5 C 0.566 3.434 6 O -0.564 6.564 7 N -0.599 5.599 8 C 0.079 3.921 9 C 0.073 3.927 10 C -0.113 4.113 11 C -0.047 4.047 12 C -0.152 4.152 13 C 0.501 3.499 14 O -0.576 6.576 15 N -0.432 5.432 16 C -0.323 4.323 17 H 0.077 0.923 18 C 0.043 3.957 19 N -0.905 5.905 20 Si 0.972 3.028 21 H -0.291 1.291 22 H -0.311 1.311 23 H -0.267 1.267 24 C 0.039 3.961 25 C -0.165 4.165 26 C -0.179 4.179 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.167 0.833 37 H 0.151 0.849 38 H 0.277 0.723 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.533 20.256 -5.566 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.021 3.979 3 N -0.153 5.153 4 C -0.059 4.059 5 C 0.352 3.648 6 O -0.443 6.443 7 N -0.329 5.329 8 C -0.063 4.063 9 C -0.069 4.069 10 C -0.134 4.134 11 C -0.073 4.073 12 C -0.158 4.158 13 C 0.293 3.707 14 O -0.463 6.463 15 N -0.150 5.150 16 C -0.451 4.451 17 H 0.095 0.905 18 C -0.162 4.162 19 N -0.541 5.541 20 Si 0.806 3.194 21 H -0.219 1.219 22 H -0.242 1.242 23 H -0.192 1.192 24 C -0.065 4.065 25 C -0.202 4.202 26 C -0.217 4.217 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.184 0.816 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.154 0.846 40 H 0.098 0.902 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.214 20.839 -5.043 22.323 hybrid contribution 0.352 -1.362 1.025 1.741 sum 6.566 19.477 -4.018 20.943 Atomic orbital electron populations 1.20939 0.86756 1.05002 1.04277 1.21626 0.98080 0.86097 0.92076 1.68054 1.07996 1.26773 1.12468 1.21341 0.90122 0.94337 1.00108 1.17961 0.85852 0.83758 0.77197 1.90748 1.14609 1.86953 1.52016 1.47802 1.09530 1.06372 1.69240 1.21918 0.98627 0.82848 1.02871 1.22522 0.76446 1.04865 1.03085 1.22057 1.02773 0.90406 0.98141 1.21936 0.92374 0.99532 0.93479 1.21143 0.95398 0.95042 1.04168 1.18578 0.83860 0.83522 0.84785 1.90483 1.35311 1.79518 1.40967 1.43165 1.36913 1.10327 1.24586 1.18611 1.35315 0.92244 0.98924 0.90532 1.25986 0.94763 0.94306 1.01165 1.69667 1.43729 1.12148 1.28599 0.85249 0.77828 0.76150 0.80221 1.21877 1.24182 1.19232 1.22181 0.94821 0.96848 0.92620 1.23171 1.01490 1.01239 0.94314 1.23314 0.93766 1.02103 1.02527 0.89079 0.90817 0.87921 0.91278 0.88102 0.91676 0.92360 0.89256 0.88245 0.81583 0.83137 0.91381 0.84646 0.90218 0.85508 0.85154 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.22 9.66 71.23 0.69 -2.54 16 2 C 0.16 5.03 6.82 43.01 0.29 5.32 16 3 N -0.44 -11.93 5.92 -172.05 -1.02 -12.94 16 4 C 0.08 2.17 6.63 41.94 0.28 2.45 16 5 C 0.57 15.11 7.66 86.91 0.67 15.77 16 6 O -0.56 -17.65 15.90 -3.73 -0.06 -17.71 16 7 N -0.60 -12.19 3.27 -874.87 -2.86 -15.05 16 8 C 0.08 1.14 10.43 127.77 1.33 2.47 16 9 C 0.07 1.18 9.30 127.77 1.19 2.37 16 10 C -0.11 -3.06 9.61 22.58 0.22 -2.84 16 11 C -0.05 -1.45 8.14 22.73 0.18 -1.26 16 12 C -0.15 -5.44 4.69 -19.93 -0.09 -5.54 16 13 C 0.50 22.60 3.98 86.78 0.35 22.94 16 14 O -0.58 -30.40 10.78 -4.01 -0.04 -30.44 16 15 N -0.43 -19.49 2.55 -616.45 -1.57 -21.06 16 16 C -0.32 -17.50 8.44 84.15 0.71 -16.79 16 17 H 0.08 4.44 7.13 -2.91 -0.02 4.42 16 18 C 0.04 2.45 5.32 85.00 0.45 2.91 16 19 N -0.90 -54.40 13.95 21.70 0.30 -54.10 16 20 Si 0.97 50.86 24.28 68.60 1.67 52.53 16 21 H -0.29 -16.44 6.70 99.48 0.67 -15.78 16 22 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 23 H -0.27 -12.88 6.32 99.48 0.63 -12.25 16 24 C 0.04 1.34 4.91 44.99 0.22 1.56 16 25 C -0.16 -5.10 9.86 30.59 0.30 -4.79 16 26 C -0.18 -5.40 10.19 30.59 0.31 -5.09 16 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.07 2.66 5.82 -2.38 -0.01 2.65 16 29 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 32 H 0.06 1.13 7.39 -2.39 -0.02 1.11 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 0.91 8.02 -2.39 -0.02 0.89 16 35 H 0.10 1.92 5.26 -2.76 -0.01 1.90 16 36 H 0.17 3.91 7.65 -2.91 -0.02 3.89 16 37 H 0.15 4.50 7.66 -2.91 -0.02 4.47 16 38 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.14 3.92 6.57 -2.38 -0.02 3.91 16 40 H 0.08 3.01 6.62 -2.39 -0.02 2.99 16 41 H 0.13 2.92 8.14 -2.38 -0.02 2.90 16 42 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -72.56 347.89 4.42 -68.14 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.91 Total: 13.69 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 7.10 Total: 16.94 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -5.15 Total: -103.16 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.10 Total: -48.15 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 1.67 Total: 52.53 kcal Total: -72.56 4.42 -68.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352739860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.639 kcal (2) G-P(sol) polarization free energy of solvation -72.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds