Wall clock time and date at job start Tue Mar 31 2020 11:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38074 * 120.00074 * 2 1 4 4 C 1.38842 * 120.00097 * 180.02562 * 3 2 1 5 5 N 1.40121 * 119.99717 * 179.97438 * 4 3 2 6 6 C 1.47048 * 125.40979 * 5.29853 * 5 4 3 7 7 C 1.54101 * 103.86140 * 179.86784 * 6 5 4 8 8 N 1.47055 * 103.86308 * 0.37275 * 7 6 5 9 9 C 1.33944 * 109.17720 * 359.75681 * 8 7 6 10 10 O 1.21591 * 123.04196 * 180.02562 * 9 8 7 11 11 C 1.38875 * 120.00052 * 359.97438 * 4 3 2 12 12 C 1.38029 * 120.00321 * 0.02615 * 11 4 3 13 13 C 1.38847 * 120.00344 * 180.02562 * 2 1 3 14 14 N 1.40094 * 119.99897 * 0.26237 * 13 2 1 15 15 C 1.34772 * 119.99918 * 145.09102 * 14 13 2 16 16 O 1.21292 * 120.00584 * 4.36614 * 15 14 13 17 17 C 1.50699 * 119.99542 * 184.36821 * 15 14 13 18 18 C 1.53005 * 109.47123 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47627 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00359 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00161 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47164 * 59.99974 * 23 21 19 25 25 H 1.48497 * 109.47099 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47282 * 299.99616 * 23 21 19 27 27 H 1.08994 * 109.47456 * 269.95767 * 1 2 3 28 28 H 1.09000 * 109.46836 * 29.96243 * 1 2 3 29 29 H 1.08998 * 109.46529 * 149.95831 * 1 2 3 30 30 H 1.08004 * 120.00114 * 0.02562 * 3 2 1 31 31 H 1.08997 * 110.55414 * 298.59326 * 6 5 4 32 32 H 1.09008 * 110.55078 * 61.40649 * 6 5 4 33 33 H 1.09008 * 110.76075 * 241.67823 * 7 6 5 34 34 H 1.08998 * 110.46242 * 118.92765 * 7 6 5 35 35 H 0.96993 * 125.41209 * 179.74773 * 8 7 6 36 36 H 1.08009 * 119.99403 * 180.02562 * 11 4 3 37 37 H 1.07996 * 119.99837 * 179.97438 * 12 11 4 38 38 H 0.96998 * 119.99811 * 325.09083 * 14 13 2 39 39 H 1.08997 * 109.47697 * 299.99855 * 17 15 14 40 40 H 1.08995 * 109.47719 * 60.00174 * 17 15 14 41 41 H 1.09006 * 109.46825 * 300.00220 * 18 17 15 42 42 H 1.09004 * 109.47189 * 59.99772 * 18 17 15 43 43 H 0.96992 * 120.00128 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1957 0.0000 4 6 3.5858 1.1958 -0.0005 5 7 4.2863 2.4093 -0.0011 6 6 3.6788 3.7438 0.1095 7 6 4.8838 4.7032 0.0600 8 7 6.0415 3.8078 -0.0825 9 6 5.6153 2.5382 -0.1082 10 8 6.3668 1.5887 -0.2182 11 6 4.2802 -0.0069 -0.0005 12 6 3.5901 -1.2023 -0.0005 13 6 2.2013 -1.2024 -0.0005 14 7 1.5009 -2.4157 -0.0066 15 6 1.9956 -3.4760 -0.6755 16 8 3.0841 -3.4046 -1.2057 17 6 1.1961 -4.7503 -0.7647 18 6 1.9790 -5.7881 -1.5718 19 6 1.1793 -7.0622 -1.6616 20 1 0.2098 -7.1257 -1.1898 21 6 1.6858 -8.1473 -2.3450 22 7 2.8665 -8.0702 -2.9191 23 14 0.6948 -9.7269 -2.4557 24 1 -0.6007 -9.4524 -3.1276 25 1 1.4546 -10.7340 -3.2391 26 1 0.4426 -10.2498 -1.0889 27 1 -0.3634 -0.0008 1.0276 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3632 -0.8896 -0.5145 30 1 1.6574 2.1311 0.0004 31 1 3.0056 3.9284 -0.7276 32 1 3.1496 3.8460 1.0570 33 1 4.9570 5.2794 0.9824 34 1 4.8062 5.3682 -0.8001 35 1 6.9667 4.0914 -0.1477 36 1 5.3603 -0.0068 -0.0005 37 1 4.1302 -2.1376 -0.0010 38 1 0.6599 -2.4926 0.4706 39 1 1.0116 -5.1346 0.2384 40 1 0.2449 -4.5488 -1.2572 41 1 2.1638 -5.4040 -2.5750 42 1 2.9301 -5.9895 -1.0789 43 1 3.2229 -8.8336 -3.3996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360550394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:54 Heat of formation + Delta-G solvation = -23.412906 kcal Electronic energy + Delta-G solvation = -25558.266278 eV Core-core repulsion = 21796.790954 eV Total energy + Delta-G solvation = -3761.475323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.72795 -40.19848 -38.33201 -36.80894 -35.34958 -33.49289 -33.39631 -32.42489 -31.05728 -29.57868 -28.80071 -26.95129 -25.66459 -23.96197 -23.21945 -22.08540 -21.41235 -20.06903 -19.62004 -18.21411 -17.51885 -17.09511 -16.87724 -16.64645 -15.82353 -15.47906 -15.12668 -14.64591 -14.45849 -14.33743 -14.26582 -14.02651 -13.87016 -13.36198 -13.31998 -13.13034 -12.82252 -12.69680 -12.39209 -12.19177 -12.02262 -11.99540 -11.43788 -11.16487 -10.91548 -10.65051 -10.60061 -10.04558 -9.96487 -9.71840 -9.66121 -9.29930 -9.18148 -9.05217 -8.67258 -8.31401 -7.45058 -5.94994 -3.99878 1.32017 1.43059 2.10329 2.79337 3.16537 3.35398 3.39124 3.40631 3.41393 3.47270 3.82554 3.89755 4.37441 4.44219 4.48287 4.80648 4.83080 4.88611 5.05238 5.13355 5.18507 5.35314 5.39760 5.43707 5.50801 5.65253 5.74174 5.79740 6.00752 6.17730 6.18519 6.19998 6.36485 6.53507 6.56631 6.74301 6.81115 6.86949 7.15225 7.23641 7.73787 7.76957 7.85437 8.07234 8.20001 8.37928 8.67028 9.08128 9.63648 11.15869 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.002343 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.592488 B =11949.307575 C =12806.714632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.142 4.142 4 C 0.164 3.836 5 N -0.568 5.568 6 C 0.086 3.914 7 C 0.093 3.907 8 N -0.739 5.739 9 C 0.697 3.303 10 O -0.563 6.563 11 C -0.137 4.137 12 C -0.089 4.089 13 C 0.133 3.867 14 N -0.683 5.683 15 C 0.507 3.493 16 O -0.512 6.512 17 C -0.128 4.128 18 C 0.037 3.963 19 C -0.529 4.529 20 H 0.056 0.944 21 C 0.058 3.942 22 N -0.889 5.889 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.432 0.568 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.407 0.593 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.024 0.976 42 H 0.025 0.975 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 30.189 9.582 31.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.163 4.163 4 C 0.070 3.930 5 N -0.295 5.295 6 C -0.037 4.037 7 C -0.032 4.032 8 N -0.402 5.402 9 C 0.398 3.602 10 O -0.439 6.439 11 C -0.158 4.158 12 C -0.110 4.110 13 C 0.038 3.962 14 N -0.330 5.330 15 C 0.297 3.703 16 O -0.385 6.385 17 C -0.168 4.168 18 C -0.001 4.001 19 C -0.567 4.567 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.527 5.527 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.275 0.725 36 H 0.175 0.825 37 H 0.164 0.836 38 H 0.242 0.758 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.699 29.496 8.992 30.883 hybrid contribution -0.628 -0.500 0.069 0.805 sum -2.327 28.996 9.060 30.467 Atomic orbital electron populations 1.20702 0.90733 1.03179 1.02206 1.19375 0.95879 0.91087 1.03291 1.20203 0.91047 0.97619 1.07473 1.17343 0.90441 0.82885 1.02309 1.44452 1.06049 1.05544 1.73493 1.22534 0.96534 0.80639 1.04023 1.22378 0.84228 0.93266 1.03358 1.45086 1.09873 1.05512 1.79744 1.15868 0.82252 0.84012 0.78083 1.90908 1.57103 1.39468 1.56450 1.21527 1.02608 0.89661 1.01997 1.21312 0.92525 0.99055 0.98078 1.17704 0.91418 0.85220 1.01906 1.43900 1.25881 1.09948 1.53238 1.21823 0.87222 0.85016 0.76231 1.90681 1.20927 1.82417 1.44523 1.21897 0.99810 0.91774 1.03332 1.18914 0.95077 0.90918 0.95191 1.21161 1.03764 0.97544 1.34228 0.92615 1.25029 0.95011 0.98838 0.95511 1.69985 1.17077 1.30955 1.34713 0.86639 0.80044 0.83086 0.78078 1.20259 1.21294 1.20243 0.91168 0.91361 0.91255 0.85829 0.89186 0.89164 0.89543 0.89586 0.72540 0.82480 0.83585 0.75779 0.89904 0.89910 0.95727 0.95697 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.47 36.00 0.34 -0.62 16 2 C -0.09 -1.12 5.89 -104.46 -0.62 -1.73 16 3 C -0.14 -1.57 9.14 -39.42 -0.36 -1.93 16 4 C 0.16 2.16 6.62 -83.61 -0.55 1.61 16 5 N -0.57 -6.14 3.16 -118.20 -0.37 -6.51 16 6 C 0.09 0.45 6.48 -3.17 -0.02 0.43 16 7 C 0.09 0.32 8.06 -3.16 -0.03 0.30 16 8 N -0.74 -5.37 6.37 -64.70 -0.41 -5.78 16 9 C 0.70 8.56 8.52 -88.40 -0.75 7.81 16 10 O -0.56 -9.41 14.75 5.29 0.08 -9.34 16 11 C -0.14 -2.21 9.28 -39.42 -0.37 -2.58 16 12 C -0.09 -1.52 8.69 -39.42 -0.34 -1.87 16 13 C 0.13 2.01 6.29 -83.62 -0.53 1.49 16 14 N -0.68 -10.11 4.75 -9.82 -0.05 -10.15 16 15 C 0.51 9.82 7.67 -10.99 -0.08 9.74 16 16 O -0.51 -12.10 13.40 5.55 0.07 -12.03 16 17 C -0.13 -2.56 5.64 -27.88 -0.16 -2.72 16 18 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 19 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 20 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 23 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.07 0.63 7.16 -51.93 -0.37 0.25 16 30 H 0.12 0.96 7.29 -52.48 -0.38 0.57 16 31 H 0.09 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.09 0.12 8.14 -51.92 -0.42 -0.30 16 34 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.43 2.35 8.96 -40.82 -0.37 1.98 16 36 H 0.16 2.78 5.27 -52.48 -0.28 2.51 16 37 H 0.15 2.83 6.21 -52.49 -0.33 2.50 16 38 H 0.41 4.52 7.84 -40.82 -0.32 4.20 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -38.47 357.21 -9.38 -47.85 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.80 Total: 3.64 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.99 Total: -2.92 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.10 Total: -49.32 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.15 Total: -21.36 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.47 -9.38 -47.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360550394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.433 kcal (2) G-P(sol) polarization free energy of solvation -38.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds