Wall clock time and date at job start Tue Mar 31 2020 11:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38074 * 120.00074 * 2 1 4 4 C 1.38842 * 120.00097 * 180.02562 * 3 2 1 5 5 N 1.40121 * 119.99717 * 179.97438 * 4 3 2 6 6 C 1.47048 * 125.40979 * 5.29853 * 5 4 3 7 7 C 1.54101 * 103.86140 * 179.86784 * 6 5 4 8 8 N 1.47055 * 103.86308 * 0.37275 * 7 6 5 9 9 C 1.33944 * 109.17720 * 359.75681 * 8 7 6 10 10 O 1.21591 * 123.04196 * 180.02562 * 9 8 7 11 11 C 1.38875 * 120.00052 * 359.97438 * 4 3 2 12 12 C 1.38029 * 120.00321 * 0.02615 * 11 4 3 13 13 C 1.38847 * 120.00344 * 180.02562 * 2 1 3 14 14 N 1.40094 * 119.99897 * 0.26237 * 13 2 1 15 15 C 1.34772 * 119.99918 * 145.09102 * 14 13 2 16 16 O 1.21292 * 120.00584 * 4.36614 * 15 14 13 17 17 C 1.50699 * 119.99542 * 184.36821 * 15 14 13 18 18 C 1.53005 * 109.47123 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47627 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00359 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00161 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47164 * 59.99974 * 23 21 19 25 25 H 1.48497 * 109.47099 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47282 * 299.99616 * 23 21 19 27 27 H 1.08994 * 109.47456 * 269.95767 * 1 2 3 28 28 H 1.09000 * 109.46836 * 29.96243 * 1 2 3 29 29 H 1.08998 * 109.46529 * 149.95831 * 1 2 3 30 30 H 1.08004 * 120.00114 * 0.02562 * 3 2 1 31 31 H 1.08997 * 110.55414 * 298.59326 * 6 5 4 32 32 H 1.09008 * 110.55078 * 61.40649 * 6 5 4 33 33 H 1.09008 * 110.76075 * 241.67823 * 7 6 5 34 34 H 1.08998 * 110.46242 * 118.92765 * 7 6 5 35 35 H 0.96993 * 125.41209 * 179.74773 * 8 7 6 36 36 H 1.08009 * 119.99403 * 180.02562 * 11 4 3 37 37 H 1.07996 * 119.99837 * 179.97438 * 12 11 4 38 38 H 0.96998 * 119.99811 * 325.09083 * 14 13 2 39 39 H 1.08997 * 109.47697 * 299.99855 * 17 15 14 40 40 H 1.08995 * 109.47719 * 60.00174 * 17 15 14 41 41 H 1.09006 * 109.46825 * 300.00220 * 18 17 15 42 42 H 1.09004 * 109.47189 * 59.99772 * 18 17 15 43 43 H 0.96992 * 120.00128 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1957 0.0000 4 6 3.5858 1.1958 -0.0005 5 7 4.2863 2.4093 -0.0011 6 6 3.6788 3.7438 0.1095 7 6 4.8838 4.7032 0.0600 8 7 6.0415 3.8078 -0.0825 9 6 5.6153 2.5382 -0.1082 10 8 6.3668 1.5887 -0.2182 11 6 4.2802 -0.0069 -0.0005 12 6 3.5901 -1.2023 -0.0005 13 6 2.2013 -1.2024 -0.0005 14 7 1.5009 -2.4157 -0.0066 15 6 1.9956 -3.4760 -0.6755 16 8 3.0841 -3.4046 -1.2057 17 6 1.1961 -4.7503 -0.7647 18 6 1.9790 -5.7881 -1.5718 19 6 1.1793 -7.0622 -1.6616 20 1 0.2098 -7.1257 -1.1898 21 6 1.6858 -8.1473 -2.3450 22 7 2.8665 -8.0702 -2.9191 23 14 0.6948 -9.7269 -2.4557 24 1 -0.6007 -9.4524 -3.1276 25 1 1.4546 -10.7340 -3.2391 26 1 0.4426 -10.2498 -1.0889 27 1 -0.3634 -0.0008 1.0276 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3632 -0.8896 -0.5145 30 1 1.6574 2.1311 0.0004 31 1 3.0056 3.9284 -0.7276 32 1 3.1496 3.8460 1.0570 33 1 4.9570 5.2794 0.9824 34 1 4.8062 5.3682 -0.8001 35 1 6.9667 4.0914 -0.1477 36 1 5.3603 -0.0068 -0.0005 37 1 4.1302 -2.1376 -0.0010 38 1 0.6599 -2.4926 0.4706 39 1 1.0116 -5.1346 0.2384 40 1 0.2449 -4.5488 -1.2572 41 1 2.1638 -5.4040 -2.5750 42 1 2.9301 -5.9895 -1.0789 43 1 3.2229 -8.8336 -3.3996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360550394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:53 Heat of formation + Delta-G solvation = -52.556298 kcal Electronic energy + Delta-G solvation = -25559.530030 eV Core-core repulsion = 21796.790954 eV Total energy + Delta-G solvation = -3762.739076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.52520 -41.48857 -39.59658 -37.71393 -36.44258 -35.58216 -34.49101 -33.43370 -32.97711 -30.35599 -29.69595 -28.11604 -27.30880 -24.98248 -24.13398 -23.36834 -22.77581 -21.11794 -21.00844 -19.02838 -18.86301 -18.60239 -17.69285 -17.58017 -17.46971 -16.78142 -16.48403 -16.12000 -15.75455 -15.29863 -15.19459 -14.92697 -14.87870 -14.76952 -14.31134 -14.20234 -14.04594 -13.80423 -13.58920 -13.26623 -13.11080 -12.89733 -12.79440 -12.76560 -12.51855 -12.46263 -11.92175 -11.73958 -11.64860 -11.32612 -11.08632 -10.78365 -10.61228 -10.55293 -10.05318 -9.74262 -8.50816 -8.17881 -6.32549 0.19440 0.36078 1.36213 1.42113 1.47149 1.54792 1.60035 1.94735 2.15488 2.44333 2.81727 2.89132 3.15062 3.46850 3.68597 3.91110 3.92194 4.14433 4.17781 4.23875 4.40141 4.47628 4.53087 4.57166 4.62649 4.68083 4.78830 4.91677 4.92544 4.95524 5.05133 5.07210 5.34430 5.40384 5.46651 5.48681 5.52619 5.61341 5.65197 5.84617 6.03681 6.13552 6.16431 6.39674 6.51196 6.86049 7.25454 7.36666 7.37938 8.94717 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.002343 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.592488 B =11949.307575 C =12806.714632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 C -0.127 4.127 4 C 0.169 3.831 5 N -0.572 5.572 6 C 0.075 3.925 7 C 0.093 3.907 8 N -0.727 5.727 9 C 0.679 3.321 10 O -0.624 6.624 11 C -0.169 4.169 12 C -0.113 4.113 13 C 0.105 3.895 14 N -0.656 5.656 15 C 0.508 3.492 16 O -0.569 6.569 17 C -0.114 4.114 18 C 0.041 3.959 19 C -0.542 4.542 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.940 5.940 23 Si 0.977 3.023 24 H -0.260 1.260 25 H -0.290 1.290 26 H -0.261 1.261 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.174 0.826 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.439 0.561 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.428 0.572 39 H 0.111 0.889 40 H 0.113 0.887 41 H -0.019 1.019 42 H -0.020 1.020 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 33.452 10.882 35.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.148 4.148 4 C 0.074 3.926 5 N -0.299 5.299 6 C -0.045 4.045 7 C -0.030 4.030 8 N -0.389 5.389 9 C 0.380 3.620 10 O -0.505 6.505 11 C -0.190 4.190 12 C -0.134 4.134 13 C 0.010 3.990 14 N -0.304 5.304 15 C 0.298 3.702 16 O -0.447 6.447 17 C -0.154 4.154 18 C 0.003 3.997 19 C -0.580 4.580 20 H 0.098 0.902 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.800 3.200 24 H -0.185 1.185 25 H -0.216 1.216 26 H -0.186 1.186 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.192 0.808 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.283 0.717 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.268 0.732 39 H 0.129 0.871 40 H 0.131 0.869 41 H -0.001 1.001 42 H -0.001 1.001 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.441 32.883 10.347 35.069 hybrid contribution 0.890 -1.306 -0.308 1.610 sum -5.551 31.578 10.039 33.597 Atomic orbital electron populations 1.20849 0.87327 1.04368 1.04234 1.19838 0.98068 0.89708 1.00127 1.20673 0.89799 0.99240 1.05052 1.17460 0.91589 0.82830 1.00674 1.44588 1.05873 1.06781 1.72616 1.23072 0.97565 0.77486 1.06400 1.22769 0.81579 0.92526 1.06163 1.45115 1.11488 1.04387 1.77896 1.16357 0.82678 0.84841 0.78142 1.90872 1.58727 1.41879 1.59051 1.21307 1.01510 0.91266 1.04887 1.21038 0.94019 0.97868 1.00501 1.17820 0.90621 0.86347 1.04234 1.43435 1.26153 1.08865 1.51925 1.21683 0.86358 0.85958 0.76234 1.90686 1.23290 1.83403 1.47317 1.21654 0.99599 0.90307 1.03835 1.18703 0.94316 0.93108 0.93562 1.21687 1.04601 0.97852 1.33860 0.90189 1.26194 0.96126 1.03442 0.94968 1.70188 1.19521 1.32275 1.36004 0.85334 0.78434 0.77473 0.78755 1.18470 1.21574 1.18583 0.88501 0.88731 0.91590 0.80837 0.86893 0.86615 0.86600 0.86868 0.71749 0.85470 0.87764 0.73245 0.87111 0.86898 1.00058 1.00130 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.47 71.24 0.67 -0.67 16 2 C -0.07 -1.58 5.89 -19.76 -0.12 -1.69 16 3 C -0.13 -2.35 9.14 22.38 0.20 -2.15 16 4 C 0.17 4.40 6.62 38.11 0.25 4.65 16 5 N -0.57 -11.60 3.16 -646.59 -2.04 -13.65 16 6 C 0.08 0.45 6.48 86.65 0.56 1.01 16 7 C 0.09 0.26 8.06 86.65 0.70 0.96 16 8 N -0.73 -9.55 6.37 -477.33 -3.04 -12.59 16 9 C 0.68 17.04 8.52 179.57 1.53 18.57 16 10 O -0.62 -22.99 14.75 -4.00 -0.06 -23.05 16 11 C -0.17 -6.00 9.28 22.37 0.21 -5.79 16 12 C -0.11 -4.30 8.69 22.37 0.19 -4.11 16 13 C 0.10 3.21 6.29 38.12 0.24 3.45 16 14 N -0.66 -19.30 4.75 -303.38 -1.44 -20.74 16 15 C 0.51 20.56 7.67 87.66 0.67 21.23 16 16 O -0.57 -29.58 13.40 -3.07 -0.04 -29.63 16 17 C -0.11 -4.59 5.64 29.85 0.17 -4.43 16 18 C 0.04 2.31 4.26 29.85 0.13 2.44 16 19 C -0.54 -31.12 9.11 25.60 0.23 -30.88 16 20 H 0.08 4.11 7.74 -2.91 -0.02 4.08 16 21 C -0.01 -0.60 5.46 84.65 0.46 -0.13 16 22 N -0.94 -61.06 13.29 21.45 0.28 -60.78 16 23 Si 0.98 44.83 29.54 68.60 2.03 46.85 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 29 H 0.07 0.90 7.16 -2.39 -0.02 0.88 16 30 H 0.17 1.51 7.29 -2.91 -0.02 1.49 16 31 H 0.11 0.21 8.12 -2.39 -0.02 0.20 16 32 H 0.12 0.16 8.14 -2.38 -0.02 0.14 16 33 H 0.12 -0.26 8.14 -2.38 -0.02 -0.28 16 34 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.44 4.41 8.96 -92.71 -0.83 3.58 16 36 H 0.13 5.26 5.27 -2.91 -0.02 5.24 16 37 H 0.10 4.73 6.21 -2.91 -0.02 4.72 16 38 H 0.43 8.54 7.84 -92.71 -0.73 7.81 16 39 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 40 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 41 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 42 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 43 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -96.60 357.21 1.30 -95.30 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -0.50 Total: 15.81 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 6.11 Total: 2.47 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -6.24 Total: -107.75 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.10 Total: -52.67 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -96.60 1.30 -95.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360550394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.742 kcal (2) G-P(sol) polarization free energy of solvation -96.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds