Wall clock time and date at job start Tue Mar 31 2020 11:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00255 * 2 1 4 4 H 1.48501 * 109.47043 * 239.99961 * 3 2 1 5 5 H 1.48503 * 109.46853 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47254 * 119.99825 * 3 2 1 7 7 C 1.37877 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00398 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47527 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47272 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54383 * 68.38008 * 11 10 9 13 13 O 1.42096 * 110.54289 * 291.62389 * 11 10 9 14 14 N 1.65607 * 104.44860 * 180.02562 * 11 10 9 15 15 C 1.46919 * 120.63194 * 89.99827 * 14 11 10 16 16 C 1.53192 * 108.77906 * 233.58888 * 15 14 11 17 17 C 1.53040 * 109.30951 * 305.36305 * 16 15 14 18 18 C 1.52997 * 109.45787 * 181.38547 * 17 16 15 19 19 H 1.09003 * 111.01967 * 297.23243 * 18 17 16 20 20 C 1.55566 * 111.22545 * 172.92989 * 18 17 16 21 21 C 1.54383 * 102.27674 * 207.98163 * 20 18 17 22 22 O 1.43235 * 107.58532 * 21.35887 * 21 20 18 23 23 C 1.43645 * 109.97529 * 1.70714 * 22 21 20 24 24 C 1.53046 * 109.53594 * 61.36517 * 17 16 15 25 25 C 1.46921 * 120.62892 * 269.97695 * 14 11 10 26 26 H 0.97004 * 120.00071 * 0.02562 * 1 2 3 27 27 H 1.09012 * 109.47149 * 60.00043 * 9 7 2 28 28 H 1.08997 * 109.47393 * 300.00631 * 9 7 2 29 29 H 1.08998 * 109.46730 * 59.99806 * 10 9 7 30 30 H 1.09004 * 109.47025 * 300.00207 * 10 9 7 31 31 H 1.08999 * 109.58357 * 113.79731 * 15 14 11 32 32 H 1.09007 * 109.58474 * 353.37763 * 15 14 11 33 33 H 1.09004 * 109.49498 * 185.41501 * 16 15 14 34 34 H 1.08995 * 109.52248 * 65.33095 * 16 15 14 35 35 H 1.08997 * 109.46051 * 301.36226 * 17 16 15 36 36 H 1.09007 * 110.84061 * 89.78331 * 20 18 17 37 37 H 1.09002 * 111.01266 * 326.26329 * 20 18 17 38 38 H 1.08995 * 109.83335 * 261.84022 * 21 20 18 39 39 H 1.08997 * 109.90193 * 140.90890 * 21 20 18 40 40 H 1.09002 * 110.30923 * 94.49115 * 23 22 21 41 41 H 1.09000 * 110.31166 * 216.56243 * 23 22 21 42 42 H 1.09005 * 109.49702 * 58.58541 * 24 17 16 43 43 H 1.08998 * 109.49502 * 178.67918 * 24 17 16 44 44 H 1.08994 * 109.59021 * 246.20296 * 25 14 11 45 45 H 1.09004 * 109.58776 * 6.62665 * 25 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2331 -0.0002 12 8 0.6647 -5.4194 -1.2375 13 8 0.6638 -5.4201 1.2364 14 7 2.5204 -6.3928 0.0006 15 6 3.0538 -6.9171 1.2651 16 6 4.5794 -6.7786 1.2519 17 6 5.1388 -7.4623 0.0022 18 6 6.6651 -7.3560 0.0031 19 1 6.9846 -6.3149 -0.0453 20 6 7.2883 -8.1883 -1.1540 21 6 8.6772 -8.5514 -0.5861 22 8 8.6049 -8.4376 0.8399 23 6 7.2739 -8.0702 1.2360 24 6 4.5808 -6.7787 -1.2483 25 6 3.0553 -6.9173 -1.2633 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8898 28 1 0.6239 -2.5567 0.8902 29 1 2.8718 -3.6043 0.8905 30 1 2.8719 -3.6044 -0.8895 31 1 2.7832 -7.9679 1.3681 32 1 2.6425 -6.3482 2.0990 33 1 4.9953 -7.2508 2.1419 34 1 4.8492 -5.7226 1.2404 35 1 4.8479 -8.5127 0.0019 36 1 7.3841 -7.5857 -2.0573 37 1 6.7022 -9.0863 -1.3493 38 1 9.4272 -7.8625 -0.9746 39 1 8.9356 -9.5735 -0.8628 40 1 6.6937 -8.9593 1.4829 41 1 7.3065 -7.3917 2.0884 42 1 4.8502 -5.7226 -1.2365 43 1 4.9978 -7.2510 -2.1378 44 1 2.7848 -7.9680 -1.3666 45 1 2.6449 -6.3485 -2.0978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378644775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:43 Heat of formation + Delta-G solvation = -164.754206 kcal Electronic energy + Delta-G solvation = -25550.295721 eV Core-core repulsion = 21885.842579 eV Total energy + Delta-G solvation = -3664.453142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78083 -39.04435 -38.23216 -37.02005 -35.90409 -34.98729 -33.12956 -32.15188 -31.50067 -29.66481 -27.60462 -25.46935 -24.50256 -23.59473 -22.73366 -21.83667 -20.99812 -19.85810 -19.13233 -18.35898 -17.42463 -17.24474 -17.02291 -16.83066 -16.53411 -15.95604 -15.73462 -15.14103 -15.10046 -14.76021 -14.63386 -14.50022 -14.35723 -14.29608 -13.74955 -13.55241 -13.50357 -13.19915 -12.91512 -12.86339 -12.81105 -12.59110 -12.42638 -12.24691 -12.22451 -12.17731 -12.05745 -11.94512 -11.77031 -11.51914 -11.27375 -11.10572 -10.99859 -10.65015 -10.42496 -9.87593 -8.26810 -6.41255 -0.70109 1.39980 1.43427 1.51664 1.75737 2.37271 2.85928 3.00917 3.06319 3.17740 3.49374 3.66665 3.70786 3.94237 4.03374 4.06383 4.21792 4.23603 4.27756 4.31702 4.37976 4.43428 4.50845 4.66327 4.73954 4.81938 4.86055 4.88137 4.89876 4.91246 4.99852 5.02125 5.07128 5.16396 5.25279 5.26103 5.26703 5.31487 5.36537 5.58979 5.67087 5.73803 6.05231 6.11703 6.72177 7.29040 8.85259 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.003423 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.429710 B = 8178.150624 C = 9356.178041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.021 3.979 10 C -0.586 4.586 11 S 2.612 3.388 12 O -0.995 6.995 13 O -0.996 6.996 14 N -0.995 5.995 15 C 0.114 3.886 16 C -0.133 4.133 17 C -0.065 4.065 18 C -0.112 4.112 19 H 0.082 0.918 20 C -0.146 4.146 21 C 0.043 3.957 22 O -0.415 6.415 23 C 0.051 3.949 24 C -0.128 4.128 25 C 0.113 3.887 26 H 0.268 0.732 27 H 0.005 0.995 28 H 0.004 0.996 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.848 -19.096 -1.411 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.718 4.718 11 S 2.710 3.290 12 O -0.985 6.985 13 O -0.986 6.986 14 N -0.834 5.834 15 C -0.011 4.011 16 C -0.172 4.172 17 C -0.084 4.084 18 C -0.131 4.131 19 H 0.101 0.899 20 C -0.183 4.183 21 C -0.033 4.033 22 O -0.336 6.336 23 C -0.025 4.025 24 C -0.167 4.167 25 C -0.011 4.011 26 H 0.076 0.924 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.913 -19.246 -1.277 25.005 hybrid contribution 0.204 1.474 -0.095 1.491 sum 16.117 -17.772 -1.372 24.031 Atomic orbital electron populations 1.70098 1.08097 1.28415 1.50797 1.26124 0.95850 1.03895 0.94339 0.85371 0.78159 0.77289 0.79489 1.18717 1.20949 1.18749 1.21485 0.93943 0.90802 1.51649 0.90656 1.18805 0.93588 0.93184 0.96159 1.30391 1.12650 1.16858 1.11929 1.04732 0.75181 0.76413 0.72666 1.93484 1.72816 1.85681 1.46565 1.93483 1.72807 1.85666 1.46630 1.57606 1.58123 1.54493 1.13225 1.21623 0.94753 1.00849 0.83831 1.22071 0.93843 1.02081 0.99200 1.20975 0.92274 1.00661 0.94447 1.22887 0.95282 1.00250 0.94637 0.89917 1.23226 0.95097 1.01044 0.98969 1.23256 0.98226 1.01583 0.80249 1.88372 1.31231 1.91059 1.22894 1.23568 0.82424 0.98894 0.97621 1.22020 0.93645 1.01934 0.99120 1.21639 0.94849 1.00836 0.83804 0.92365 0.97711 0.97720 0.84351 0.84322 0.89560 0.90069 0.88776 0.91469 0.89422 0.88946 0.89383 0.91274 0.90898 0.91266 0.89581 0.91585 0.88530 0.89574 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 3 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.54 -29.95 9.11 25.60 0.23 -29.71 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.81 16 9 C 0.02 1.13 4.98 29.85 0.15 1.28 16 10 C -0.59 -22.14 6.12 71.98 0.44 -21.70 16 11 S 2.61 93.63 5.41 -56.49 -0.31 93.32 16 12 O -1.00 -41.49 16.73 -127.65 -2.14 -43.62 16 13 O -1.00 -41.63 16.72 -127.65 -2.13 -43.77 16 14 N -1.00 -24.23 3.22 -513.09 -1.65 -25.88 16 15 C 0.11 2.21 6.31 86.36 0.55 2.76 16 16 C -0.13 -1.88 5.18 30.67 0.16 -1.72 16 17 C -0.07 -0.76 1.66 -10.77 -0.02 -0.78 16 18 C -0.11 -1.30 2.61 -9.25 -0.02 -1.32 16 19 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 20 C -0.15 -1.41 5.70 31.95 0.18 -1.22 16 21 C 0.04 0.55 7.80 72.45 0.56 1.12 16 22 O -0.42 -7.68 11.36 -148.98 -1.69 -9.37 16 23 C 0.05 0.69 6.20 72.65 0.45 1.14 16 24 C -0.13 -1.74 5.24 30.67 0.16 -1.58 16 25 C 0.11 2.16 6.31 86.36 0.55 2.71 16 26 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 27 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 28 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 30 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.78 7.10 -2.38 -0.02 1.77 16 33 H 0.09 1.00 7.23 -2.38 -0.02 0.98 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 0.87 8.11 -2.39 -0.02 0.85 16 36 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.09 0.70 8.02 -2.39 -0.02 0.68 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.82 8.03 -2.39 -0.02 0.80 16 41 H 0.09 1.12 8.04 -2.39 -0.02 1.10 16 42 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.10 0.92 7.51 -2.39 -0.02 0.91 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.75 7.10 -2.39 -0.02 1.74 16 Total: -1.00 -76.39 365.16 -0.81 -77.20 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.95 Total: 12.51 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 3.85 Total: -48.78 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.37 Total: -82.66 kcal Atomic # 8 Polarization: -90.80 SS G_CDS: -5.96 Total: -96.76 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 93.63 SS G_CDS: -0.31 Total: 93.32 kcal Total: -76.39 -0.81 -77.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378644775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.552 kcal (2) G-P(sol) polarization free energy of solvation -76.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds