Wall clock time and date at job start Tue Mar 31 2020 11:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00287 * 2 1 4 4 C 1.53003 * 109.49630 * 299.93442 * 3 2 1 5 5 C 1.53045 * 109.49439 * 59.99578 * 3 2 1 6 6 C 1.53046 * 109.53361 * 181.31882 * 5 3 2 7 7 C 1.53194 * 109.31267 * 298.63299 * 6 5 3 8 8 N 1.46929 * 108.77520 * 54.63821 * 7 6 5 9 9 S 1.65596 * 120.63022 * 126.36710 * 8 7 6 10 10 O 1.42103 * 104.28124 * 333.92663 * 9 8 7 11 11 O 1.42100 * 104.27576 * 206.07409 * 9 8 7 12 12 C 1.81394 * 104.44930 * 90.00141 * 9 8 7 13 13 C 1.53003 * 109.47372 * 171.90513 * 12 9 8 14 14 C 1.50709 * 115.54723 * 39.58643 * 13 12 9 15 15 H 1.07995 * 119.99864 * 270.07387 * 14 13 12 16 16 C 1.37870 * 119.99976 * 90.07742 * 14 13 12 17 17 N 1.31509 * 120.00136 * 172.01696 * 16 14 13 18 18 Si 1.86803 * 120.00249 * 352.00948 * 16 14 13 19 19 H 1.48500 * 109.46723 * 91.72373 * 18 16 14 20 20 H 1.48493 * 109.47551 * 211.72766 * 18 16 14 21 21 H 1.48501 * 109.47235 * 331.72767 * 18 16 14 22 22 C 1.53001 * 117.49948 * 253.88267 * 13 12 9 23 23 C 1.52996 * 117.50296 * 185.25786 * 13 12 9 24 24 C 1.46924 * 118.73787 * 306.64163 * 8 7 6 25 25 H 1.08997 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47521 * 300.00583 * 1 2 3 27 27 H 1.09005 * 109.46744 * 60.00005 * 1 2 3 28 28 H 1.08994 * 109.46858 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.46708 * 300.05898 * 4 3 2 30 30 H 1.08999 * 109.46865 * 60.06224 * 4 3 2 31 31 H 1.08994 * 109.46324 * 61.30363 * 5 3 2 32 32 H 1.09000 * 109.45026 * 301.32757 * 5 3 2 33 33 H 1.09001 * 109.49458 * 178.68134 * 6 5 3 34 34 H 1.09000 * 109.52640 * 58.60456 * 6 5 3 35 35 H 1.08997 * 109.58873 * 294.84823 * 7 6 5 36 36 H 1.09000 * 109.70384 * 174.49089 * 7 6 5 37 37 H 1.08998 * 109.47441 * 51.90237 * 12 9 8 38 38 H 1.09005 * 109.47164 * 291.90224 * 12 9 8 39 39 H 0.96998 * 120.00611 * 179.97438 * 17 16 14 40 40 H 1.08997 * 117.49889 * 359.97438 * 22 13 12 41 41 H 1.09001 * 117.49736 * 145.01955 * 22 13 12 42 42 H 1.09001 * 117.50109 * 214.98169 * 23 13 12 43 43 H 1.08997 * 117.49866 * 359.97438 * 23 13 12 44 44 H 1.09004 * 109.58828 * 173.14355 * 24 8 7 45 45 H 1.09003 * 109.58661 * 293.57107 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5605 2.0647 -1.2499 5 6 1.5590 2.0655 1.2494 6 6 2.1546 3.4752 1.2338 7 6 3.6834 3.3795 1.2520 8 7 4.1173 2.5288 0.1354 9 16 5.2381 3.0742 -0.9549 10 8 5.1024 4.4883 -0.9194 11 8 4.9598 2.3411 -2.1399 12 6 6.8336 2.5701 -0.2543 13 6 7.9450 2.8401 -1.2706 14 6 7.8157 4.1238 -2.0495 15 1 7.2764 4.1357 -2.9851 16 6 8.3860 5.2828 -1.5677 17 7 8.4106 6.3640 -2.3161 18 14 9.1235 5.3178 0.1482 19 1 10.5668 4.9765 0.0735 20 1 8.9653 6.6759 0.7275 21 1 8.4248 4.3286 1.0076 22 6 8.5519 1.6343 -1.9908 23 6 9.3565 2.3680 -0.9161 24 6 3.5334 1.1873 0.0010 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.0045 3.0601 -1.2497 29 1 1.8822 1.5230 -2.1394 30 1 0.4740 2.1520 -1.2506 31 1 1.9006 1.5369 2.1392 32 1 0.4710 2.1311 1.2611 33 1 1.8139 4.0238 2.1119 34 1 1.8334 3.9965 0.3320 35 1 4.0109 2.9406 2.1944 36 1 4.1153 4.3743 1.1426 37 1 6.8072 1.5062 -0.0188 38 1 7.0270 3.1388 0.6552 39 1 8.8115 7.1796 -1.9771 40 1 8.1596 0.6486 -1.7404 41 1 8.8577 1.7693 -3.0283 42 1 10.1916 2.9857 -1.2465 43 1 9.4934 1.8655 0.0414 44 1 3.8641 0.7368 -0.9349 45 1 3.8483 0.5660 0.8394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408462226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:30 Heat of formation + Delta-G solvation = -109.879778 kcal Electronic energy + Delta-G solvation = -26971.437722 eV Core-core repulsion = 23309.364114 eV Total energy + Delta-G solvation = -3662.073608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85043 -38.83379 -38.02290 -37.68371 -36.71463 -34.34174 -33.30859 -32.21584 -30.12431 -28.54945 -27.66712 -27.46593 -25.33276 -23.58729 -23.32958 -21.30307 -20.51200 -19.47751 -18.78460 -18.47898 -17.50852 -17.22130 -17.00922 -16.54623 -16.33410 -16.22005 -15.62278 -15.43888 -15.10747 -14.86348 -14.66021 -14.57135 -14.37741 -14.24192 -13.91513 -13.30210 -13.19101 -13.09710 -12.99470 -12.89673 -12.82042 -12.61756 -12.56000 -12.26737 -12.17569 -12.05998 -11.85611 -11.79360 -11.72473 -11.61155 -11.43406 -10.92165 -10.74527 -10.42432 -10.33528 -9.85162 -8.38002 -6.53825 -0.58865 1.31246 1.34438 1.45486 1.91226 2.32304 2.78867 2.94774 3.02976 3.14345 3.41307 3.52027 3.78385 3.80578 3.92012 4.04180 4.14502 4.19752 4.26318 4.35607 4.44088 4.46182 4.51659 4.57401 4.60949 4.63965 4.68297 4.78910 4.81349 4.85334 4.88866 4.92467 4.96009 5.00624 5.10637 5.16194 5.16781 5.20791 5.42831 5.46287 5.60653 5.66266 6.13578 6.27820 6.60174 7.23469 8.78777 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.004699 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.835183 B = 5957.353472 C = 6309.626587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.393 6.393 3 C 0.105 3.895 4 C -0.183 4.183 5 C -0.133 4.133 6 C -0.131 4.131 7 C 0.101 3.899 8 N -1.000 6.000 9 S 2.622 3.378 10 O -0.986 6.986 11 O -0.996 6.996 12 C -0.575 4.575 13 C -0.031 4.031 14 C -0.539 4.539 15 H 0.026 0.974 16 C 0.040 3.960 17 N -0.933 5.933 18 Si 0.928 3.072 19 H -0.256 1.256 20 H -0.292 1.292 21 H -0.217 1.217 22 C -0.166 4.166 23 C -0.171 4.171 24 C 0.126 3.874 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.155 0.845 38 H 0.138 0.862 39 H 0.270 0.730 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.376 -13.042 14.386 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.311 6.311 3 C 0.064 3.936 4 C -0.240 4.240 5 C -0.170 4.170 6 C -0.170 4.170 7 C -0.023 4.023 8 N -0.839 5.839 9 S 2.721 3.279 10 O -0.975 6.975 11 O -0.986 6.986 12 C -0.708 4.708 13 C -0.033 4.033 14 C -0.576 4.576 15 H 0.044 0.956 16 C -0.161 4.161 17 N -0.570 5.570 18 Si 0.750 3.250 19 H -0.180 1.180 20 H -0.219 1.219 21 H -0.139 1.139 22 C -0.203 4.203 23 C -0.209 4.209 24 C 0.001 3.999 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.173 0.827 38 H 0.156 0.844 39 H 0.079 0.921 40 H 0.133 0.867 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.136 0.864 44 H 0.101 0.899 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.459 -12.553 13.554 22.856 hybrid contribution 0.600 0.850 0.015 1.041 sum -12.858 -11.703 13.568 22.054 Atomic orbital electron populations 1.22994 0.79852 1.03854 1.01012 1.87873 1.21353 1.26714 1.95206 1.21569 0.93359 0.83559 0.95095 1.22472 1.02456 1.00717 0.98359 1.22057 1.01761 0.95611 0.97577 1.21936 0.94197 0.97277 1.03559 1.21793 0.96428 0.94672 0.89434 1.57791 1.56493 1.24944 1.44699 1.04384 0.76195 0.73372 0.73911 1.93490 1.86171 1.31531 1.86357 1.93429 1.84451 1.74476 1.46238 1.30224 1.17921 1.12594 1.10033 1.18707 0.92173 0.94810 0.97635 1.20506 1.37680 0.92551 1.06904 0.95557 1.25932 0.94289 0.94260 1.01614 1.70048 1.44729 1.03041 1.39148 0.86078 0.80331 0.78400 0.80200 1.18025 1.21872 1.13920 1.23058 1.04286 0.95881 0.97123 1.23047 0.93939 1.03599 1.00316 1.21197 0.91811 0.82756 1.04179 0.88204 0.92202 0.93782 0.92998 0.93154 0.90211 0.89217 0.89742 0.87649 0.92722 0.87880 0.90168 0.82699 0.84426 0.92078 0.86659 0.90519 0.90439 0.86429 0.89897 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.21 113.37 1.16 1.44 16 2 O -0.39 -8.54 10.35 -148.98 -1.54 -10.08 16 3 C 0.11 2.40 0.88 -10.86 -0.01 2.39 16 4 C -0.18 -4.84 7.76 71.98 0.56 -4.28 16 5 C -0.13 -2.25 4.53 30.62 0.14 -2.11 16 6 C -0.13 -2.54 5.74 30.67 0.18 -2.36 16 7 C 0.10 2.37 6.43 86.36 0.56 2.93 16 8 N -1.00 -29.25 2.67 -513.83 -1.37 -30.62 16 9 S 2.62 109.36 4.57 -56.49 -0.26 109.11 16 10 O -0.99 -50.15 15.86 -127.65 -2.02 -52.17 16 11 O -1.00 -47.09 16.58 -127.65 -2.12 -49.20 16 12 C -0.58 -21.05 6.10 71.98 0.44 -20.61 16 13 C -0.03 -1.39 1.13 -52.93 -0.06 -1.45 16 14 C -0.54 -31.56 7.55 25.60 0.19 -31.37 16 15 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 16 C 0.04 2.38 5.46 84.65 0.46 2.84 16 17 N -0.93 -60.10 13.96 21.44 0.30 -59.81 16 18 Si 0.93 42.86 25.26 68.60 1.73 44.60 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 21 H -0.22 -8.45 5.24 99.48 0.52 -7.93 16 22 C -0.17 -6.47 9.88 30.59 0.30 -6.17 16 23 C -0.17 -6.49 7.71 30.59 0.24 -6.26 16 24 C 0.13 3.20 5.44 86.22 0.47 3.67 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 0.69 6.39 -2.39 -0.02 0.67 16 27 H 0.04 0.66 6.42 -2.38 -0.02 0.64 16 28 H 0.05 1.58 5.97 -2.39 -0.01 1.57 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.68 6.55 -2.39 -0.02 1.66 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.16 6.47 -2.39 -0.02 1.15 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.28 6.34 -2.39 -0.02 1.27 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.21 6.86 -2.39 -0.02 2.19 16 37 H 0.16 4.12 7.94 -2.39 -0.02 4.10 16 38 H 0.14 4.60 6.16 -2.39 -0.01 4.59 16 39 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 40 H 0.12 3.57 8.08 -2.39 -0.02 3.55 16 41 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.08 3.18 7.34 -2.39 -0.02 3.16 16 43 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 44 H 0.08 2.42 6.85 -2.39 -0.02 2.40 16 45 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -81.16 350.41 0.13 -81.03 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.79 Total: 28.51 kcal Atomic # 6 Polarization: -65.97 SS G_CDS: 4.62 Total: -61.35 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -1.07 Total: -90.42 kcal Atomic # 8 Polarization: -105.78 SS G_CDS: -5.68 Total: -111.46 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.73 Total: 44.60 kcal Atomic # 16 Polarization: 109.36 SS G_CDS: -0.26 Total: 109.11 kcal Total: -81.16 0.13 -81.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408462226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.852 kcal (2) G-P(sol) polarization free energy of solvation -81.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds