Wall clock time and date at job start Tue Mar 31 2020 11:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21374 * 119.99760 * 2 1 4 4 C 1.46287 * 120.00232 * 180.02562 * 2 1 3 5 5 C 1.36562 * 127.22821 * 274.87104 * 4 2 1 6 6 C 1.50701 * 125.15703 * 359.97438 * 5 4 2 7 7 O 1.33851 * 109.68856 * 179.97438 * 5 4 2 8 8 C 1.34464 * 111.48760 * 359.97438 * 7 5 4 9 9 N 1.33105 * 133.95043 * 180.02562 * 8 7 5 10 10 C 1.31606 * 120.78246 * 179.97438 * 9 8 7 11 11 N 1.32001 * 122.68790 * 359.97438 * 10 9 8 12 12 C 1.33103 * 120.82362 * 359.97438 * 11 10 9 13 13 N 1.38381 * 120.84243 * 180.02562 * 12 11 10 14 14 C 1.46505 * 120.00345 * 355.11689 * 13 12 11 15 15 C 1.52994 * 109.47306 * 179.72587 * 14 13 12 16 16 C 1.52996 * 109.47331 * 299.99764 * 15 14 13 17 17 C 1.52996 * 109.47313 * 60.00498 * 15 14 13 18 18 C 1.50705 * 109.46947 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99690 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99977 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00201 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99799 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.47194 * 90.00288 * 22 20 18 24 24 H 1.48501 * 109.47158 * 210.00259 * 22 20 18 25 25 H 1.48500 * 109.47305 * 330.00489 * 22 20 18 26 26 C 1.39862 * 118.31478 * 0.27264 * 12 11 10 27 27 H 1.09003 * 109.46792 * 265.00030 * 1 2 3 28 28 H 1.09000 * 109.46981 * 24.99584 * 1 2 3 29 29 H 1.09000 * 109.46991 * 145.00193 * 1 2 3 30 30 H 1.09003 * 109.46842 * 184.96950 * 6 5 4 31 31 H 1.08992 * 109.47150 * 304.96897 * 6 5 4 32 32 H 1.09003 * 109.46820 * 64.97106 * 6 5 4 33 33 H 1.07994 * 118.66057 * 179.97438 * 10 9 8 34 34 H 0.97001 * 120.00052 * 174.84357 * 13 12 11 35 35 H 1.09001 * 109.46692 * 299.72757 * 14 13 12 36 36 H 1.09000 * 109.46795 * 59.72114 * 14 13 12 37 37 H 1.09001 * 109.47114 * 60.00495 * 16 15 14 38 38 H 1.08997 * 109.47395 * 180.02562 * 16 15 14 39 39 H 1.08994 * 109.47413 * 300.00547 * 16 15 14 40 40 H 1.09001 * 109.47509 * 59.99325 * 17 15 14 41 41 H 1.08997 * 109.47078 * 179.97438 * 17 15 14 42 42 H 1.09010 * 109.46708 * 299.99560 * 17 15 14 43 43 H 0.96995 * 119.99786 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0512 0.0000 4 6 2.2385 -1.2669 -0.0006 5 6 2.5717 -2.0290 1.0825 6 6 2.2385 -1.6954 2.5139 7 8 3.2390 -3.1172 0.6801 8 6 3.3831 -3.1403 -0.6566 9 7 3.9548 -3.9872 -1.5097 10 6 3.9438 -3.7495 -2.8040 11 7 3.3765 -2.6786 -3.3274 12 6 2.7791 -1.7759 -2.5529 13 7 2.1838 -0.6534 -3.1012 14 6 2.2980 -0.3916 -4.5381 15 6 1.5505 0.8982 -4.8825 16 6 0.0749 0.7482 -4.5071 17 6 2.1595 2.0645 -4.1017 18 6 1.6686 1.1678 -6.3605 19 1 2.2211 0.4870 -6.9911 20 6 1.0703 2.2829 -6.9078 21 7 0.3971 3.1117 -6.1399 22 14 1.2160 2.6167 -8.7399 23 1 0.0868 1.9672 -9.4527 24 1 1.1765 4.0815 -8.9809 25 1 2.5006 2.0668 -9.2427 26 6 2.7728 -1.9880 -1.1705 27 1 -0.3633 -0.0896 1.0238 28 1 -0.3633 0.9314 -0.4342 29 1 -0.3633 -0.8418 -0.5894 30 1 2.6999 -2.4292 3.1748 31 1 2.6175 -0.7019 2.7531 32 1 1.1570 -1.7140 2.6490 33 1 4.4183 -4.4595 -3.4651 34 1 1.6876 -0.0420 -2.5347 35 1 3.3493 -0.2848 -4.8055 36 1 1.8642 -1.2226 -5.0944 37 1 -0.0101 0.5535 -3.4380 38 1 -0.4577 1.6669 -4.7529 39 1 -0.3589 -0.0827 -5.0634 40 1 3.2108 2.1713 -4.3691 41 1 1.6272 2.9834 -4.3474 42 1 2.0745 1.8698 -3.0325 43 1 -0.0234 3.8964 -6.5249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414179785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:15 Heat of formation + Delta-G solvation = 17.462990 kcal Electronic energy + Delta-G solvation = -27152.075362 eV Core-core repulsion = 23392.372550 eV Total energy + Delta-G solvation = -3759.702811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.90194 -39.84672 -39.27960 -37.29054 -34.83052 -33.42302 -32.44608 -31.76637 -30.44415 -30.17906 -27.46394 -25.82305 -25.78415 -25.08847 -23.79139 -23.26759 -22.43357 -19.90243 -18.94771 -18.25319 -17.30177 -17.01066 -16.90645 -15.88405 -15.73454 -15.17705 -15.02185 -14.81858 -14.57955 -14.52024 -14.29917 -13.63654 -13.58173 -13.42225 -13.08897 -12.93125 -12.77207 -12.45700 -12.29394 -12.21198 -11.79057 -11.26862 -11.17792 -10.81424 -10.80560 -10.72321 -10.41544 -10.23433 -10.08231 -9.90005 -9.68303 -9.42923 -9.14619 -9.07102 -8.84915 -8.43404 -7.62054 -6.06351 -4.17097 0.79124 1.25326 1.59370 1.94753 1.98110 3.25659 3.30181 3.33293 3.38598 3.74924 3.92078 4.04993 4.32446 4.37243 4.43965 4.80990 4.86175 4.95506 5.03364 5.06908 5.20034 5.20503 5.29877 5.36930 5.45260 5.76196 5.94538 6.00720 6.10809 6.21677 6.41105 6.67881 6.74793 6.77401 6.80920 6.92067 6.95100 7.20551 7.22517 7.40456 7.48754 7.62988 7.71838 7.93832 8.07413 8.31133 8.39131 8.83008 9.48998 10.95230 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.003955 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.742509 B = 7077.918978 C = 8280.803298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.420 3.580 3 O -0.430 6.430 4 C -0.210 4.210 5 C 0.054 3.946 6 C -0.080 4.080 7 O -0.170 6.170 8 C 0.326 3.674 9 N -0.561 5.561 10 C 0.374 3.626 11 N -0.581 5.581 12 C 0.493 3.507 13 N -0.676 5.676 14 C 0.133 3.867 15 C 0.054 3.946 16 C -0.130 4.130 17 C -0.132 4.132 18 C -0.506 4.506 19 H 0.059 0.941 20 C 0.067 3.933 21 N -0.885 5.885 22 Si 0.895 3.105 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.274 4.274 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.209 0.791 34 H 0.408 0.592 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.001 0.999 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.027 0.973 41 H 0.087 0.913 42 H 0.004 0.996 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 -9.542 14.983 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.294 3.706 3 O -0.301 6.301 4 C -0.214 4.214 5 C 0.004 3.996 6 C -0.136 4.136 7 O -0.065 6.065 8 C 0.147 3.853 9 N -0.293 5.293 10 C 0.085 3.915 11 N -0.310 5.310 12 C 0.242 3.758 13 N -0.303 5.303 14 C 0.011 3.989 15 C 0.054 3.946 16 C -0.188 4.188 17 C -0.190 4.190 18 C -0.545 4.545 19 H 0.077 0.923 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.286 4.286 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.225 0.775 34 H 0.246 0.754 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.020 0.980 38 H 0.107 0.893 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.106 0.894 42 H 0.023 0.977 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.700 -9.515 14.426 17.295 hybrid contribution -0.487 0.890 -0.388 1.086 sum 0.212 -8.625 14.037 16.477 Atomic orbital electron populations 1.22308 0.92530 1.05934 1.04936 1.21745 0.91743 0.86144 0.70943 1.90663 1.72373 1.33587 1.33499 1.20988 1.08209 0.99894 0.92312 1.22453 0.96228 0.84855 0.96059 1.20526 1.03264 1.03500 0.86284 1.83586 1.62256 1.40696 1.19924 1.19217 0.93314 0.90397 0.82413 1.67322 1.26424 1.32594 1.02951 1.24664 0.89143 0.91167 0.86525 1.68295 1.19015 1.05514 1.38197 1.18100 0.85720 0.86737 0.85267 1.45363 1.52090 1.21010 1.11839 1.21950 1.01048 0.99954 0.75917 1.18404 0.91517 0.88603 0.96117 1.21840 0.99464 1.02703 0.94813 1.21842 0.99517 1.03016 0.94580 1.20928 1.33508 1.08605 0.91454 0.92265 1.24882 0.94833 0.95785 0.97955 1.69800 1.34322 1.13489 1.34692 0.86548 0.78555 0.77336 0.85301 1.20685 1.21251 1.19855 1.20194 1.13541 1.01263 0.93606 0.88087 0.88495 0.89197 0.89349 0.88806 0.88735 0.77513 0.75421 0.92090 0.91750 0.98033 0.89331 0.95225 0.95340 0.89397 0.97660 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 10.22 36.01 0.37 -1.62 16 2 C 0.42 5.74 5.33 -31.08 -0.17 5.57 16 3 O -0.43 -7.31 17.86 5.48 0.10 -7.22 16 4 C -0.21 -2.97 5.97 -103.52 -0.62 -3.59 16 5 C 0.05 0.64 7.32 -34.91 -0.26 0.38 16 6 C -0.08 -0.54 10.13 36.01 0.36 -0.18 16 7 O -0.17 -2.40 10.50 6.47 0.07 -2.33 16 8 C 0.33 5.25 8.61 -16.28 -0.14 5.11 16 9 N -0.56 -8.75 10.46 -14.61 -0.15 -8.91 16 10 C 0.37 5.36 12.23 -92.14 -1.13 4.23 16 11 N -0.58 -9.89 9.74 -13.76 -0.13 -10.02 16 12 C 0.49 8.80 7.53 -154.75 -1.16 7.63 16 13 N -0.68 -12.64 5.09 -60.22 -0.31 -12.95 16 14 C 0.13 2.76 4.57 -4.04 -0.02 2.74 16 15 C 0.05 1.25 0.50 -155.67 -0.08 1.18 16 16 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 17 C -0.13 -3.09 8.08 37.16 0.30 -2.79 16 18 C -0.51 -13.01 8.01 -34.44 -0.28 -13.29 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 21 N -0.88 -23.39 9.35 55.43 0.52 -22.87 16 22 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.27 -4.54 6.35 -104.82 -0.67 -5.20 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.21 2.04 8.06 -52.49 -0.42 1.61 16 34 H 0.41 7.53 4.60 -40.82 -0.19 7.35 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.00 0.01 6.86 -51.93 -0.36 -0.34 16 38 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 42 H 0.00 0.10 6.86 -51.92 -0.36 -0.26 16 43 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -30.40 357.92 -8.53 -38.93 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.72 Total: 5.35 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.27 Total: -0.79 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.07 Total: -54.75 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.17 Total: -9.55 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.40 -8.53 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414179785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.389 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds