Wall clock time and date at job start Tue Mar 31 2020 11:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21374 * 119.99760 * 2 1 4 4 C 1.46287 * 120.00232 * 180.02562 * 2 1 3 5 5 C 1.36562 * 127.22821 * 274.87104 * 4 2 1 6 6 C 1.50701 * 125.15703 * 359.97438 * 5 4 2 7 7 O 1.33851 * 109.68856 * 179.97438 * 5 4 2 8 8 C 1.34464 * 111.48760 * 359.97438 * 7 5 4 9 9 N 1.33105 * 133.95043 * 180.02562 * 8 7 5 10 10 C 1.31606 * 120.78246 * 179.97438 * 9 8 7 11 11 N 1.32001 * 122.68790 * 359.97438 * 10 9 8 12 12 C 1.33103 * 120.82362 * 359.97438 * 11 10 9 13 13 N 1.38381 * 120.84243 * 180.02562 * 12 11 10 14 14 C 1.46505 * 120.00345 * 355.11689 * 13 12 11 15 15 C 1.52994 * 109.47306 * 179.72587 * 14 13 12 16 16 C 1.52996 * 109.47331 * 299.99764 * 15 14 13 17 17 C 1.52996 * 109.47313 * 60.00498 * 15 14 13 18 18 C 1.50705 * 109.46947 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99690 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99977 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00201 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99799 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.47194 * 90.00288 * 22 20 18 24 24 H 1.48501 * 109.47158 * 210.00259 * 22 20 18 25 25 H 1.48500 * 109.47305 * 330.00489 * 22 20 18 26 26 C 1.39862 * 118.31478 * 0.27264 * 12 11 10 27 27 H 1.09003 * 109.46792 * 265.00030 * 1 2 3 28 28 H 1.09000 * 109.46981 * 24.99584 * 1 2 3 29 29 H 1.09000 * 109.46991 * 145.00193 * 1 2 3 30 30 H 1.09003 * 109.46842 * 184.96950 * 6 5 4 31 31 H 1.08992 * 109.47150 * 304.96897 * 6 5 4 32 32 H 1.09003 * 109.46820 * 64.97106 * 6 5 4 33 33 H 1.07994 * 118.66057 * 179.97438 * 10 9 8 34 34 H 0.97001 * 120.00052 * 174.84357 * 13 12 11 35 35 H 1.09001 * 109.46692 * 299.72757 * 14 13 12 36 36 H 1.09000 * 109.46795 * 59.72114 * 14 13 12 37 37 H 1.09001 * 109.47114 * 60.00495 * 16 15 14 38 38 H 1.08997 * 109.47395 * 180.02562 * 16 15 14 39 39 H 1.08994 * 109.47413 * 300.00547 * 16 15 14 40 40 H 1.09001 * 109.47509 * 59.99325 * 17 15 14 41 41 H 1.08997 * 109.47078 * 179.97438 * 17 15 14 42 42 H 1.09010 * 109.46708 * 299.99560 * 17 15 14 43 43 H 0.96995 * 119.99786 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0512 0.0000 4 6 2.2385 -1.2669 -0.0006 5 6 2.5717 -2.0290 1.0825 6 6 2.2385 -1.6954 2.5139 7 8 3.2390 -3.1172 0.6801 8 6 3.3831 -3.1403 -0.6566 9 7 3.9548 -3.9872 -1.5097 10 6 3.9438 -3.7495 -2.8040 11 7 3.3765 -2.6786 -3.3274 12 6 2.7791 -1.7759 -2.5529 13 7 2.1838 -0.6534 -3.1012 14 6 2.2980 -0.3916 -4.5381 15 6 1.5505 0.8982 -4.8825 16 6 0.0749 0.7482 -4.5071 17 6 2.1595 2.0645 -4.1017 18 6 1.6686 1.1678 -6.3605 19 1 2.2211 0.4870 -6.9911 20 6 1.0703 2.2829 -6.9078 21 7 0.3971 3.1117 -6.1399 22 14 1.2160 2.6167 -8.7399 23 1 0.0868 1.9672 -9.4527 24 1 1.1765 4.0815 -8.9809 25 1 2.5006 2.0668 -9.2427 26 6 2.7728 -1.9880 -1.1705 27 1 -0.3633 -0.0896 1.0238 28 1 -0.3633 0.9314 -0.4342 29 1 -0.3633 -0.8418 -0.5894 30 1 2.6999 -2.4292 3.1748 31 1 2.6175 -0.7019 2.7531 32 1 1.1570 -1.7140 2.6490 33 1 4.4183 -4.4595 -3.4651 34 1 1.6876 -0.0420 -2.5347 35 1 3.3493 -0.2848 -4.8055 36 1 1.8642 -1.2226 -5.0944 37 1 -0.0101 0.5535 -3.4380 38 1 -0.4577 1.6669 -4.7529 39 1 -0.3589 -0.0827 -5.0634 40 1 3.2108 2.1713 -4.3691 41 1 1.6272 2.9834 -4.3474 42 1 2.0745 1.8698 -3.0325 43 1 -0.0234 3.8964 -6.5249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414179785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:15 Heat of formation + Delta-G solvation = -0.394715 kcal Electronic energy + Delta-G solvation = -27152.849730 eV Core-core repulsion = 23392.372550 eV Total energy + Delta-G solvation = -3760.477180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.02141 -41.06956 -40.38041 -38.90560 -36.35789 -34.54782 -33.78200 -33.18367 -31.79063 -31.11391 -28.47248 -27.67419 -27.55091 -26.81009 -24.96476 -24.44627 -23.57600 -21.09137 -20.69266 -19.40777 -18.61831 -18.23077 -18.01420 -17.64675 -17.07450 -16.53516 -16.18599 -16.01809 -15.93073 -15.81382 -15.49536 -14.99310 -14.86876 -14.70554 -14.27189 -14.11021 -13.93560 -13.47055 -13.44524 -13.22806 -13.15748 -13.05251 -12.89685 -12.60171 -12.48644 -12.15863 -12.14229 -11.98759 -11.53106 -11.26524 -11.17121 -11.07317 -10.78659 -10.43323 -10.37519 -10.26950 -8.89077 -8.03628 -6.20133 -0.32537 0.01019 0.55993 0.85208 0.92349 1.43658 1.46426 1.54540 1.94028 2.46172 2.69771 2.74210 3.00107 3.20483 3.28460 3.38973 3.71155 3.83202 4.07222 4.14691 4.32027 4.44547 4.46510 4.52031 4.56543 4.60714 4.61413 4.69688 4.87232 4.93304 4.99146 5.03926 5.06176 5.10786 5.17475 5.35098 5.53297 5.57599 5.64583 5.69612 5.92935 6.03852 6.12780 6.22220 6.33731 6.42039 6.84312 7.13198 7.48016 8.95985 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.003955 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.742509 B = 7077.918978 C = 8280.803298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.428 3.572 3 O -0.474 6.474 4 C -0.245 4.245 5 C 0.081 3.919 6 C -0.082 4.082 7 O -0.171 6.171 8 C 0.309 3.691 9 N -0.563 5.563 10 C 0.372 3.628 11 N -0.598 5.598 12 C 0.476 3.524 13 N -0.684 5.684 14 C 0.155 3.845 15 C 0.049 3.951 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.525 4.525 19 H 0.053 0.947 20 C 0.027 3.973 21 N -0.902 5.902 22 Si 0.949 3.051 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.283 4.283 27 H 0.142 0.858 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.249 0.751 34 H 0.407 0.593 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.064 0.936 39 H 0.026 0.974 40 H 0.017 0.983 41 H 0.065 0.935 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 -10.798 16.635 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.304 3.696 3 O -0.349 6.349 4 C -0.249 4.249 5 C 0.032 3.968 6 C -0.138 4.138 7 O -0.066 6.066 8 C 0.129 3.871 9 N -0.294 5.294 10 C 0.084 3.916 11 N -0.327 5.327 12 C 0.226 3.774 13 N -0.313 5.313 14 C 0.032 3.968 15 C 0.049 3.951 16 C -0.176 4.176 17 C -0.176 4.176 18 C -0.564 4.564 19 H 0.071 0.929 20 C -0.173 4.173 21 N -0.540 5.540 22 Si 0.776 3.224 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.295 4.295 27 H 0.160 0.840 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.145 0.855 33 H 0.265 0.735 34 H 0.245 0.755 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.271 -10.823 16.100 19.401 hybrid contribution -0.306 1.184 -0.753 1.436 sum -0.035 -9.640 15.346 18.123 Atomic orbital electron populations 1.22378 0.89630 1.05789 1.07556 1.22220 0.93179 0.85151 0.69004 1.90649 1.73450 1.34846 1.35958 1.21159 1.10513 1.01015 0.92180 1.23473 0.92817 0.82860 0.97666 1.20908 1.05562 1.04383 0.82940 1.83639 1.62420 1.41635 1.18924 1.19480 0.93786 0.90568 0.83246 1.67414 1.26077 1.32510 1.03379 1.25484 0.88477 0.90969 0.86709 1.68310 1.19333 1.06170 1.38912 1.18266 0.86306 0.86724 0.86098 1.45064 1.53563 1.21960 1.10667 1.21471 0.99579 0.98418 0.77378 1.18398 0.92316 0.89508 0.94927 1.21654 0.98459 1.01281 0.96246 1.21665 0.98413 1.02216 0.95305 1.21213 1.33520 1.08725 0.92892 0.92901 1.25499 0.94718 0.95737 1.01303 1.69918 1.34647 1.13609 1.35841 0.85695 0.78434 0.76989 0.81314 1.20269 1.21192 1.19793 1.20376 1.13593 1.01907 0.93592 0.83991 0.89105 0.88634 0.87365 0.87896 0.85496 0.73528 0.75515 0.93520 0.92267 0.95745 0.91677 0.95437 0.96357 0.91608 0.96542 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.47 10.22 71.24 0.73 -2.75 16 2 C 0.43 11.17 5.33 27.78 0.15 11.32 16 3 O -0.47 -16.09 17.86 -3.32 -0.06 -16.15 16 4 C -0.24 -6.61 5.97 -19.15 -0.11 -6.72 16 5 C 0.08 1.74 7.32 25.29 0.19 1.92 16 6 C -0.08 -0.79 10.13 71.24 0.72 -0.07 16 7 O -0.17 -4.52 10.50 0.23 0.00 -4.52 16 8 C 0.31 9.62 8.61 84.97 0.73 10.36 16 9 N -0.56 -16.90 10.46 -313.23 -3.28 -20.18 16 10 C 0.37 10.22 12.23 180.88 2.21 12.44 16 11 N -0.60 -20.20 9.74 -197.43 -1.92 -22.12 16 12 C 0.48 17.01 7.53 133.24 1.00 18.01 16 13 N -0.68 -25.81 5.09 -344.43 -1.75 -27.56 16 14 C 0.15 6.51 4.57 86.38 0.40 6.90 16 15 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 16 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 17 C -0.12 -5.67 8.08 71.98 0.58 -5.08 16 18 C -0.53 -27.38 8.01 25.60 0.21 -27.18 16 19 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 20 C 0.03 1.42 5.15 84.65 0.44 1.86 16 21 N -0.90 -48.30 9.35 21.45 0.20 -48.10 16 22 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C -0.28 -9.23 6.35 -19.99 -0.13 -9.36 16 27 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.25 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.41 15.14 4.60 -92.71 -0.43 14.71 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 37 H 0.02 0.94 6.86 -2.39 -0.02 0.93 16 38 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 3.45 6.07 -2.39 -0.01 3.43 16 42 H 0.02 0.71 6.86 -2.38 -0.02 0.69 16 43 H 0.26 13.44 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -67.38 357.92 3.50 -63.88 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.62 Total: 21.38 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 7.66 Total: 9.19 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -6.75 Total: -117.95 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.06 Total: -20.67 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -67.38 3.50 -63.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414179785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.483 kcal (2) G-P(sol) polarization free energy of solvation -67.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds