Wall clock time and date at job start Tue Mar 31 2020 11:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38254 * 119.88966 * 2 1 4 4 C 1.37972 * 120.22229 * 180.27804 * 3 2 1 5 5 C 1.39612 * 119.99503 * 359.72324 * 4 3 2 6 6 C 1.47860 * 120.11366 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99746 * 0.02562 * 6 5 4 8 8 O 1.21544 * 120.00334 * 180.02562 * 6 5 4 9 9 C 1.39458 * 119.77597 * 359.97438 * 5 4 3 10 10 C 1.38630 * 119.78234 * 0.02562 * 9 5 4 11 11 N 1.39973 * 120.00006 * 179.97438 * 10 9 5 12 12 C 1.34774 * 120.00270 * 331.34992 * 11 10 9 13 13 O 1.21585 * 120.00296 * 4.42977 * 12 11 10 14 14 N 1.34780 * 119.99874 * 184.42043 * 12 11 10 15 15 C 1.46504 * 119.99527 * 179.97438 * 14 12 11 16 16 C 1.53009 * 109.46698 * 184.73302 * 15 14 12 17 17 C 1.50699 * 115.54772 * 303.63537 * 16 15 14 18 18 H 1.08002 * 120.00096 * 99.32659 * 17 16 15 19 19 C 1.37878 * 119.99921 * 279.04450 * 17 16 15 20 20 N 1.31514 * 120.00147 * 355.36491 * 19 17 16 21 21 Si 1.86797 * 119.99925 * 175.36861 * 19 17 16 22 22 H 1.48503 * 109.47505 * 59.99983 * 21 19 17 23 23 H 1.48501 * 109.47272 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47015 * 299.99959 * 21 19 17 25 25 C 1.52992 * 117.51521 * 89.33726 * 16 15 14 26 26 C 1.52998 * 117.49533 * 157.96656 * 16 15 14 27 27 H 1.09002 * 109.46977 * 270.27767 * 1 2 3 28 28 H 1.09004 * 109.46961 * 30.27329 * 1 2 3 29 29 H 1.08993 * 109.47181 * 150.27716 * 1 2 3 30 30 H 1.08008 * 119.88791 * 359.97438 * 3 2 1 31 31 H 1.08006 * 120.00429 * 179.70157 * 4 3 2 32 32 H 0.97001 * 120.00112 * 0.02562 * 7 6 5 33 33 H 0.97000 * 119.99921 * 180.02562 * 7 6 5 34 34 H 1.08008 * 120.11001 * 180.02562 * 9 5 4 35 35 H 0.96999 * 119.99670 * 151.34514 * 11 10 9 36 36 H 0.96994 * 120.00226 * 0.02562 * 14 12 11 37 37 H 1.08997 * 109.47026 * 64.73764 * 15 14 12 38 38 H 1.08993 * 109.47630 * 304.73149 * 15 14 12 39 39 H 0.97000 * 120.00035 * 185.00707 * 20 19 17 40 40 H 1.09001 * 117.49748 * 214.96687 * 25 16 15 41 41 H 1.08994 * 117.50598 * 359.97438 * 25 16 15 42 42 H 1.08996 * 117.50179 * 359.97438 * 26 16 15 43 43 H 1.08998 * 117.49788 * 144.97391 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1986 0.0000 4 6 3.5757 1.2067 -0.0058 5 6 4.2807 0.0016 -0.0058 6 6 5.7593 0.0071 -0.0126 7 7 6.4287 1.1769 -0.0182 8 8 6.3710 -1.0431 -0.0131 9 6 3.5856 -1.2074 0.0005 10 6 2.1993 -1.2046 0.0063 11 7 1.4971 -2.4154 0.0122 12 6 2.0426 -3.5136 -0.5471 13 8 3.1763 -3.4738 -0.9846 14 7 1.3316 -4.6562 -0.6211 15 6 1.9245 -5.8498 -1.2295 16 6 0.8769 -6.9632 -1.2940 17 6 0.2480 -7.3409 0.0224 18 1 -0.7232 -6.9506 0.2886 19 6 0.9099 -8.1894 0.8843 20 7 2.0468 -8.7412 0.5200 21 14 0.1919 -8.5554 2.5695 22 1 -1.1477 -9.1768 2.4125 23 1 1.0881 -9.4894 3.2973 24 1 0.0640 -7.2912 3.3382 25 6 -0.0030 -7.0342 -2.5436 26 6 1.0931 -8.0779 -2.3194 27 1 -0.3633 0.0050 1.0277 28 1 -0.3633 0.8876 -0.5181 29 1 -0.3633 -0.8924 -0.5095 30 1 1.6524 2.1319 -0.0004 31 1 4.1104 2.1451 -0.0106 32 1 5.9406 2.0151 -0.0174 33 1 7.3987 1.1805 -0.0230 34 1 4.1256 -2.1428 0.0010 35 1 0.6178 -2.4641 0.4188 36 1 0.4271 -4.6880 -0.2722 37 1 2.7709 -6.1817 -0.6283 38 1 2.2653 -5.6128 -2.2373 39 1 2.4756 -9.3936 1.0956 40 1 -1.0368 -7.3543 -2.4136 41 1 0.1639 -6.2876 -3.3198 42 1 1.9813 -8.0179 -2.9483 43 1 0.7808 -9.0846 -2.0418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432043177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:38 Heat of formation + Delta-G solvation = -43.017941 kcal Electronic energy + Delta-G solvation = -25996.373356 eV Core-core repulsion = 22234.047895 eV Total energy + Delta-G solvation = -3762.325461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90916 -40.76118 -39.44982 -38.48286 -35.95336 -35.14302 -34.67866 -33.99149 -33.43284 -30.75797 -28.46228 -27.90142 -27.01715 -24.19163 -23.67882 -22.94210 -21.85898 -21.46139 -21.22842 -19.56026 -19.18858 -18.19125 -17.92643 -17.28830 -16.84262 -16.54077 -16.27979 -16.12565 -15.89022 -15.80804 -15.51946 -14.99830 -14.87720 -14.63200 -14.50029 -14.35837 -13.82316 -13.50349 -13.25727 -12.98230 -12.91411 -12.79336 -12.67123 -12.43074 -12.39030 -12.02654 -11.63828 -11.42220 -11.21690 -11.05402 -10.91790 -10.76958 -10.46587 -10.16296 -9.89818 -9.73474 -9.02446 -8.09686 -6.24474 -0.18297 0.37778 1.43361 1.44734 1.51268 1.60076 1.75379 2.12270 2.41885 2.50340 2.88778 3.16254 3.24711 3.55043 3.81047 3.88246 4.06579 4.17087 4.22162 4.35713 4.49219 4.52468 4.65615 4.70539 4.75667 4.87752 4.92766 4.99526 5.01819 5.20206 5.26984 5.28297 5.34442 5.41624 5.48638 5.49569 5.60625 5.69193 5.77338 5.84484 5.97910 6.05020 6.35563 6.42920 6.83335 7.05839 7.29266 7.45802 7.51054 8.97426 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.003203 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.544907 B = 8740.246192 C = 9087.704784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.100 4.100 4 C -0.088 4.088 5 C -0.149 4.149 6 C 0.556 3.444 7 N -0.823 5.823 8 O -0.598 6.598 9 C -0.106 4.106 10 C 0.141 3.859 11 N -0.670 5.670 12 C 0.691 3.309 13 O -0.622 6.622 14 N -0.704 5.704 15 C 0.197 3.803 16 C 0.006 3.994 17 C -0.505 4.505 18 H 0.069 0.931 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.296 1.296 24 H -0.269 1.269 25 C -0.175 4.175 26 C -0.159 4.159 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.420 0.580 33 H 0.412 0.588 34 H 0.112 0.888 35 H 0.423 0.577 36 H 0.411 0.589 37 H 0.023 0.977 38 H 0.037 0.963 39 H 0.258 0.742 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 26.492 0.165 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.087 4.087 3 C -0.117 4.117 4 C -0.108 4.108 5 C -0.152 4.152 6 C 0.342 3.658 7 N -0.388 5.388 8 O -0.479 6.479 9 C -0.128 4.128 10 C 0.046 3.954 11 N -0.318 5.318 12 C 0.391 3.609 13 O -0.503 6.503 14 N -0.357 5.357 15 C 0.072 3.928 16 C 0.005 3.995 17 C -0.542 4.542 18 H 0.087 0.913 19 C -0.176 4.176 20 N -0.545 5.545 21 Si 0.777 3.223 22 H -0.192 1.192 23 H -0.222 1.222 24 H -0.194 1.194 25 C -0.212 4.212 26 C -0.198 4.198 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.196 0.804 31 H 0.188 0.812 32 H 0.253 0.747 33 H 0.244 0.756 34 H 0.130 0.870 35 H 0.262 0.738 36 H 0.247 0.753 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.135 25.607 -0.161 25.799 hybrid contribution -0.111 -1.115 1.142 1.600 sum -3.246 24.492 0.982 24.726 Atomic orbital electron populations 1.20916 0.88118 1.04425 1.04058 1.20265 0.98137 0.90599 0.99746 1.21275 0.93481 0.97974 0.99020 1.21603 0.95062 0.96398 0.97698 1.19774 0.92311 0.94722 1.08436 1.18614 0.88269 0.84026 0.74851 1.43448 1.11508 1.07592 1.76240 1.90835 1.70896 1.34067 1.52134 1.21516 0.93942 0.98996 0.98363 1.17525 0.90254 0.85298 1.02370 1.42390 1.22318 1.06799 1.60320 1.16257 0.84297 0.81143 0.79209 1.90882 1.19201 1.84435 1.55815 1.44910 1.18534 1.08846 1.63378 1.20439 0.95146 0.83035 0.94159 1.19039 0.96067 0.94208 0.90161 1.20629 1.03609 1.29322 1.00675 0.91303 1.25735 0.94809 0.95833 1.01265 1.70112 1.17964 1.27778 1.38648 0.85734 0.78221 0.78023 0.80362 1.19214 1.22191 1.19447 1.22998 0.95897 1.01899 1.00377 1.22418 0.98897 0.94976 1.03462 0.88940 0.88259 0.91910 0.80360 0.81159 0.74689 0.75573 0.87001 0.73794 0.75288 0.95856 0.94462 0.93303 0.89330 0.89506 0.91457 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.44 71.24 0.67 -0.67 16 2 C -0.08 -1.55 5.90 -19.69 -0.12 -1.67 16 3 C -0.10 -1.29 9.67 22.21 0.21 -1.08 16 4 C -0.09 -1.34 9.54 22.54 0.21 -1.12 16 5 C -0.15 -4.04 5.87 -20.10 -0.12 -4.16 16 6 C 0.56 16.09 8.05 86.79 0.70 16.79 16 7 N -0.82 -12.44 8.82 -175.60 -1.55 -13.98 16 8 O -0.60 -25.00 17.18 -3.85 -0.07 -25.07 16 9 C -0.11 -3.79 8.30 22.66 0.19 -3.61 16 10 C 0.14 4.08 6.38 38.10 0.24 4.33 16 11 N -0.67 -20.07 4.89 -317.28 -1.55 -21.62 16 12 C 0.69 27.97 8.44 179.05 1.51 29.48 16 13 O -0.62 -31.18 13.40 -3.98 -0.05 -31.23 16 14 N -0.70 -28.20 5.43 -478.52 -2.60 -30.79 16 15 C 0.20 9.36 5.55 86.38 0.48 9.84 16 16 C 0.01 0.28 1.52 -52.93 -0.08 0.20 16 17 C -0.50 -25.38 8.15 25.60 0.21 -25.18 16 18 H 0.07 3.27 7.82 -2.91 -0.02 3.24 16 19 C 0.02 1.30 5.44 84.66 0.46 1.76 16 20 N -0.91 -52.08 12.84 21.45 0.28 -51.80 16 21 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 C -0.17 -6.98 9.93 30.59 0.30 -6.68 16 26 C -0.16 -7.37 9.42 30.59 0.29 -7.08 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.65 8.09 -2.39 -0.02 0.63 16 29 H 0.06 0.82 7.05 -2.39 -0.02 0.80 16 30 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 31 H 0.17 0.86 6.40 -2.91 -0.02 0.85 16 32 H 0.42 2.57 6.86 -92.71 -0.64 1.94 16 33 H 0.41 5.26 8.93 -92.71 -0.83 4.43 16 34 H 0.11 5.29 5.32 -2.91 -0.02 5.28 16 35 H 0.42 9.36 7.58 -92.71 -0.70 8.65 16 36 H 0.41 14.36 8.03 -92.71 -0.74 13.62 16 37 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.26 14.41 8.32 -92.71 -0.77 13.64 16 40 H 0.09 3.36 8.14 -2.39 -0.02 3.35 16 41 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -82.93 364.42 -0.16 -83.09 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -1.81 Total: 36.15 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.17 Total: 11.16 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -5.42 Total: -118.20 kcal Atomic # 8 Polarization: -56.18 SS G_CDS: -0.12 Total: -56.30 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -82.93 -0.16 -83.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432043177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.075 kcal (2) G-P(sol) polarization free energy of solvation -82.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds