Wall clock time and date at job start Tue Mar 31 2020 11:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37685 * 120.03909 * 2 1 4 4 C 1.39113 * 120.07477 * 180.25907 * 3 2 1 5 5 N 1.39424 * 119.92487 * 179.76815 * 4 3 2 6 6 C 1.34779 * 120.00137 * 323.88869 * 5 4 3 7 7 O 1.21573 * 119.99812 * 354.44186 * 6 5 4 8 8 N 1.34777 * 119.99785 * 174.43250 * 6 5 4 9 9 C 1.46503 * 119.99652 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47282 * 184.91501 * 9 8 6 11 11 C 1.50703 * 115.54897 * 60.62383 * 10 9 8 12 12 H 1.08000 * 119.99828 * 269.15305 * 11 10 9 13 13 C 1.37881 * 119.99919 * 89.15781 * 11 10 9 14 14 N 1.31510 * 119.99814 * 3.30223 * 13 11 10 15 15 Si 1.86792 * 119.99899 * 183.30171 * 13 11 10 16 16 H 1.48501 * 109.47288 * 60.00094 * 15 13 11 17 17 H 1.48501 * 109.46973 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47133 * 299.99960 * 15 13 11 19 19 C 1.52999 * 117.49888 * 274.95743 * 10 9 8 20 20 C 1.52997 * 117.50059 * 206.29869 * 10 9 8 21 21 C 1.39160 * 120.14652 * 359.48491 * 4 3 2 22 22 C 1.37646 * 120.07577 * 0.23762 * 21 4 3 23 23 C 1.39736 * 120.03740 * 179.72943 * 2 1 3 24 24 C 1.47584 * 120.07438 * 0.02562 * 23 2 1 25 25 N 1.34779 * 120.00374 * 173.61309 * 24 23 2 26 26 O 1.21593 * 120.00203 * 353.61019 * 24 23 2 27 27 H 1.08995 * 109.46948 * 263.62458 * 1 2 3 28 28 H 1.08997 * 109.47313 * 23.62258 * 1 2 3 29 29 H 1.09002 * 109.47230 * 143.62461 * 1 2 3 30 30 H 1.07998 * 119.95916 * 0.02562 * 3 2 1 31 31 H 0.97004 * 120.00280 * 144.17452 * 5 4 3 32 32 H 0.96994 * 120.00442 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.46968 * 304.91814 * 9 8 6 34 34 H 1.09001 * 109.46907 * 64.91329 * 9 8 6 35 35 H 0.97005 * 120.00044 * 185.01146 * 14 13 11 36 36 H 1.09007 * 117.49897 * 359.97438 * 19 10 9 37 37 H 1.09000 * 117.50164 * 145.01543 * 19 10 9 38 38 H 1.09003 * 117.49831 * 214.97639 * 20 10 9 39 39 H 1.09004 * 117.49955 * 359.97402 * 20 10 9 40 40 H 1.08000 * 119.96320 * 180.25568 * 21 4 3 41 41 H 1.07999 * 120.03571 * 180.02562 * 22 21 4 42 42 H 0.97001 * 119.99715 * 0.02562 * 25 24 23 43 43 H 0.96993 * 120.00077 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1919 0.0000 4 6 3.5874 1.1928 -0.0054 5 7 4.2821 2.4016 -0.0103 6 6 3.7977 3.4545 -0.6982 7 8 2.8106 3.3229 -1.3955 8 7 4.4076 4.6534 -0.6128 9 6 3.8807 5.7981 -1.3601 10 6 4.8183 6.9947 -1.1881 11 6 6.2274 6.7928 -1.6829 12 1 6.9861 6.4158 -1.0130 13 6 6.5480 7.0895 -2.9906 14 7 5.6409 7.6096 -3.7882 15 14 8.2707 6.7528 -3.6294 16 1 8.5696 5.3034 -3.5067 17 1 8.3578 7.1577 -5.0554 18 1 9.2544 7.5302 -2.8336 19 6 4.6232 7.8728 0.0496 20 6 4.2130 8.3927 -1.3305 21 6 4.2870 -0.0101 -0.0001 22 6 3.6042 -1.2053 0.0057 23 6 2.2065 -1.2097 0.0057 24 6 1.4711 -2.4892 0.0112 25 7 2.1409 -3.6521 -0.1132 26 8 0.2607 -2.4944 0.1279 27 1 -0.3633 -0.1141 1.0213 28 1 -0.3634 0.9415 -0.4118 29 1 -0.3634 -0.8274 -0.6095 30 1 1.6562 2.1272 0.0004 31 1 5.1163 2.4836 0.4780 32 1 5.1953 4.7584 -0.0566 33 1 3.8102 5.5407 -2.4169 34 1 2.8911 6.0545 -0.9819 35 1 5.8435 7.7509 -4.7263 36 1 3.8265 7.5982 0.7411 37 1 5.5140 8.3048 0.5057 38 1 4.8342 9.1665 -1.7817 39 1 3.1469 8.4598 -1.5472 40 1 5.3670 -0.0060 -0.0002 41 1 4.1478 -2.1384 0.0103 42 1 3.1065 -3.6481 -0.2059 43 1 1.6576 -4.4930 -0.1092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432062280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:57 Heat of formation + Delta-G solvation = -17.155944 kcal Electronic energy + Delta-G solvation = -25656.214589 eV Core-core repulsion = 21895.010588 eV Total energy + Delta-G solvation = -3761.204001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73176 -39.79349 -38.12481 -36.80305 -34.71671 -34.25819 -33.49616 -32.18648 -31.99531 -29.81580 -27.13015 -26.42551 -25.30274 -23.65648 -21.97751 -21.28085 -20.87485 -20.33205 -19.48466 -18.13308 -18.02567 -17.25886 -16.89151 -16.04559 -15.39418 -15.25602 -15.10007 -14.78750 -14.64211 -14.47276 -14.07035 -13.68128 -13.47292 -13.25159 -13.15477 -12.78677 -12.64416 -12.33507 -12.08122 -11.93072 -11.60683 -11.29080 -11.04040 -10.97475 -10.60788 -10.28340 -10.24101 -9.99786 -9.90834 -9.76474 -9.54122 -9.15698 -8.81724 -8.54093 -8.45550 -8.23361 -8.00728 -6.13192 -4.23087 0.75223 1.29818 2.69606 2.88527 3.22469 3.29080 3.29689 3.33065 3.46526 3.83847 4.30125 4.50748 4.62178 4.71645 4.75941 5.14432 5.16680 5.27330 5.33337 5.39714 5.69587 5.83577 5.87312 5.95855 5.98242 6.12806 6.22813 6.27805 6.40404 6.43961 6.45833 6.54211 6.59844 6.64791 6.72373 6.95466 7.06826 7.10520 7.12889 7.24848 7.34091 7.53338 7.74335 8.08024 8.26983 8.35339 8.77841 8.89260 9.44399 10.94384 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.002702 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.890962 B =10361.676784 C =11098.303553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.002 3.998 3 C -0.135 4.135 4 C 0.218 3.782 5 N -0.693 5.693 6 C 0.695 3.305 7 O -0.580 6.580 8 N -0.709 5.709 9 C 0.180 3.820 10 C 0.021 3.979 11 C -0.500 4.500 12 H 0.058 0.942 13 C 0.074 3.926 14 N -0.874 5.874 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.213 4.213 20 C -0.137 4.137 21 C -0.171 4.171 22 C -0.059 4.059 23 C -0.179 4.179 24 C 0.567 3.433 25 N -0.856 5.856 26 O -0.539 6.539 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.142 0.858 31 H 0.408 0.592 32 H 0.399 0.601 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.399 0.601 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 -17.291 9.454 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 C -0.155 4.155 4 C 0.120 3.880 5 N -0.340 5.340 6 C 0.395 3.605 7 O -0.457 6.457 8 N -0.361 5.361 9 C 0.056 3.944 10 C 0.020 3.980 11 C -0.538 4.538 12 H 0.076 0.924 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.250 4.250 20 C -0.175 4.175 21 C -0.192 4.192 22 C -0.078 4.078 23 C -0.184 4.184 24 C 0.355 3.645 25 N -0.420 5.420 26 O -0.418 6.418 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.160 0.840 31 H 0.244 0.756 32 H 0.233 0.767 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.229 0.771 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.601 -16.916 8.681 19.351 hybrid contribution 2.292 -0.373 -0.128 2.326 sum -1.309 -17.289 8.553 19.334 Atomic orbital electron populations 1.21081 0.89952 1.03274 1.03337 1.19869 0.96779 0.90826 0.92472 1.21090 0.92556 0.98752 1.03136 1.17700 0.91295 0.84687 0.94284 1.42746 1.27311 1.09978 1.53935 1.16047 0.83580 0.80514 0.80332 1.90926 1.27625 1.83578 1.43588 1.45176 1.32390 1.07867 1.50669 1.20953 0.94146 0.83781 0.95478 1.19042 0.95367 0.87690 0.95913 1.20275 0.92348 1.45074 0.96067 0.92352 1.24981 0.96994 0.93876 0.97189 1.69982 1.34224 1.41621 1.05124 0.86703 0.84828 0.78688 0.78019 1.20279 1.21231 1.20224 1.23071 1.01443 1.09015 0.91478 1.22445 0.98322 0.99740 0.96984 1.20781 1.00108 0.90814 1.07464 1.20914 0.92582 0.97591 0.96761 1.19557 0.93439 0.92884 1.12484 1.18234 0.86897 0.84174 0.75168 1.43785 1.11832 1.08508 1.77857 1.90771 1.13912 1.87314 1.49785 0.90755 0.92048 0.88833 0.84022 0.75649 0.76734 0.91229 0.94397 0.92750 0.91718 0.90382 0.89240 0.91774 0.85098 0.85584 0.77135 0.76738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 8.72 36.01 0.31 -1.25 16 2 C 0.00 0.03 5.91 -104.26 -0.62 -0.58 16 3 C -0.13 -1.97 8.24 -39.46 -0.33 -2.30 16 4 C 0.22 2.92 6.22 -83.74 -0.52 2.40 16 5 N -0.69 -9.35 5.32 -14.22 -0.08 -9.43 16 6 C 0.70 12.44 8.27 -86.92 -0.72 11.72 16 7 O -0.58 -12.50 14.21 5.30 0.08 -12.43 16 8 N -0.71 -12.85 5.41 -65.23 -0.35 -13.20 16 9 C 0.18 3.87 5.52 -4.04 -0.02 3.85 16 10 C 0.02 0.47 1.57 -155.66 -0.24 0.22 16 11 C -0.50 -12.41 8.53 -34.44 -0.29 -12.71 16 12 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 13 C 0.07 1.91 5.42 -17.82 -0.10 1.82 16 14 N -0.87 -23.76 12.36 55.43 0.69 -23.08 16 15 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 C -0.21 -4.26 9.95 -26.70 -0.27 -4.52 16 20 C -0.14 -3.05 8.99 -26.70 -0.24 -3.29 16 21 C -0.17 -1.78 9.95 -39.46 -0.39 -2.18 16 22 C -0.06 -0.55 9.51 -39.22 -0.37 -0.92 16 23 C -0.18 -2.10 5.88 -104.95 -0.62 -2.72 16 24 C 0.57 6.39 7.96 -12.45 -0.10 6.29 16 25 N -0.86 -5.73 8.82 30.47 0.27 -5.46 16 26 O -0.54 -7.76 14.17 5.28 0.07 -7.69 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 29 H 0.09 1.30 5.86 -51.93 -0.30 0.99 16 30 H 0.14 2.32 6.61 -52.49 -0.35 1.97 16 31 H 0.41 4.11 8.84 -40.82 -0.36 3.75 16 32 H 0.40 6.41 8.35 -40.82 -0.34 6.07 16 33 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.04 0.80 8.11 -51.93 -0.42 0.37 16 35 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.09 2.17 7.99 -51.93 -0.41 1.75 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.13 0.69 6.44 -52.49 -0.34 0.35 16 42 H 0.40 1.59 6.89 -40.82 -0.28 1.31 16 43 H 0.40 2.12 8.93 -40.82 -0.36 1.76 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -32.09 362.73 -9.06 -41.16 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -5.67 Total: 13.74 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.51 Total: -4.17 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.53 Total: -51.17 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.15 Total: -20.11 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.09 -9.06 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432062280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.000 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds