Wall clock time and date at job start Tue Mar 31 2020 11:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37685 * 120.03909 * 2 1 4 4 C 1.39113 * 120.07477 * 180.25907 * 3 2 1 5 5 N 1.39424 * 119.92487 * 179.76815 * 4 3 2 6 6 C 1.34779 * 120.00137 * 323.88869 * 5 4 3 7 7 O 1.21573 * 119.99812 * 354.44186 * 6 5 4 8 8 N 1.34777 * 119.99785 * 174.43250 * 6 5 4 9 9 C 1.46503 * 119.99652 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47282 * 184.91501 * 9 8 6 11 11 C 1.50703 * 115.54897 * 60.62383 * 10 9 8 12 12 H 1.08000 * 119.99828 * 269.15305 * 11 10 9 13 13 C 1.37881 * 119.99919 * 89.15781 * 11 10 9 14 14 N 1.31510 * 119.99814 * 3.30223 * 13 11 10 15 15 Si 1.86792 * 119.99899 * 183.30171 * 13 11 10 16 16 H 1.48501 * 109.47288 * 60.00094 * 15 13 11 17 17 H 1.48501 * 109.46973 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47133 * 299.99960 * 15 13 11 19 19 C 1.52999 * 117.49888 * 274.95743 * 10 9 8 20 20 C 1.52997 * 117.50059 * 206.29869 * 10 9 8 21 21 C 1.39160 * 120.14652 * 359.48491 * 4 3 2 22 22 C 1.37646 * 120.07577 * 0.23762 * 21 4 3 23 23 C 1.39736 * 120.03740 * 179.72943 * 2 1 3 24 24 C 1.47584 * 120.07438 * 0.02562 * 23 2 1 25 25 N 1.34779 * 120.00374 * 173.61309 * 24 23 2 26 26 O 1.21593 * 120.00203 * 353.61019 * 24 23 2 27 27 H 1.08995 * 109.46948 * 263.62458 * 1 2 3 28 28 H 1.08997 * 109.47313 * 23.62258 * 1 2 3 29 29 H 1.09002 * 109.47230 * 143.62461 * 1 2 3 30 30 H 1.07998 * 119.95916 * 0.02562 * 3 2 1 31 31 H 0.97004 * 120.00280 * 144.17452 * 5 4 3 32 32 H 0.96994 * 120.00442 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.46968 * 304.91814 * 9 8 6 34 34 H 1.09001 * 109.46907 * 64.91329 * 9 8 6 35 35 H 0.97005 * 120.00044 * 185.01146 * 14 13 11 36 36 H 1.09007 * 117.49897 * 359.97438 * 19 10 9 37 37 H 1.09000 * 117.50164 * 145.01543 * 19 10 9 38 38 H 1.09003 * 117.49831 * 214.97639 * 20 10 9 39 39 H 1.09004 * 117.49955 * 359.97402 * 20 10 9 40 40 H 1.08000 * 119.96320 * 180.25568 * 21 4 3 41 41 H 1.07999 * 120.03571 * 180.02562 * 22 21 4 42 42 H 0.97001 * 119.99715 * 0.02562 * 25 24 23 43 43 H 0.96993 * 120.00077 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1919 0.0000 4 6 3.5874 1.1928 -0.0054 5 7 4.2821 2.4016 -0.0103 6 6 3.7977 3.4545 -0.6982 7 8 2.8106 3.3229 -1.3955 8 7 4.4076 4.6534 -0.6128 9 6 3.8807 5.7981 -1.3601 10 6 4.8183 6.9947 -1.1881 11 6 6.2274 6.7928 -1.6829 12 1 6.9861 6.4158 -1.0130 13 6 6.5480 7.0895 -2.9906 14 7 5.6409 7.6096 -3.7882 15 14 8.2707 6.7528 -3.6294 16 1 8.5696 5.3034 -3.5067 17 1 8.3578 7.1577 -5.0554 18 1 9.2544 7.5302 -2.8336 19 6 4.6232 7.8728 0.0496 20 6 4.2130 8.3927 -1.3305 21 6 4.2870 -0.0101 -0.0001 22 6 3.6042 -1.2053 0.0057 23 6 2.2065 -1.2097 0.0057 24 6 1.4711 -2.4892 0.0112 25 7 2.1409 -3.6521 -0.1132 26 8 0.2607 -2.4944 0.1279 27 1 -0.3633 -0.1141 1.0213 28 1 -0.3634 0.9415 -0.4118 29 1 -0.3634 -0.8274 -0.6095 30 1 1.6562 2.1272 0.0004 31 1 5.1163 2.4836 0.4780 32 1 5.1953 4.7584 -0.0566 33 1 3.8102 5.5407 -2.4169 34 1 2.8911 6.0545 -0.9819 35 1 5.8435 7.7509 -4.7263 36 1 3.8265 7.5982 0.7411 37 1 5.5140 8.3048 0.5057 38 1 4.8342 9.1665 -1.7817 39 1 3.1469 8.4598 -1.5472 40 1 5.3670 -0.0060 -0.0002 41 1 4.1478 -2.1384 0.0103 42 1 3.1065 -3.6481 -0.2059 43 1 1.6576 -4.4930 -0.1092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432062280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:56 Heat of formation + Delta-G solvation = -40.500371 kcal Electronic energy + Delta-G solvation = -25657.226879 eV Core-core repulsion = 21895.010588 eV Total energy + Delta-G solvation = -3762.216291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.83725 -40.90069 -39.25390 -38.42714 -35.92487 -35.11695 -34.99274 -33.93059 -33.09774 -30.86026 -28.14134 -28.07088 -27.10132 -24.72105 -22.94134 -22.92538 -22.03878 -21.51002 -21.19225 -19.45192 -18.84618 -18.50550 -17.75458 -17.74772 -16.74581 -16.53471 -16.17658 -16.07579 -16.02600 -15.80394 -15.44891 -15.06404 -14.63824 -14.43834 -14.24754 -14.11066 -13.84414 -13.65835 -13.42324 -13.24159 -13.07455 -12.90866 -12.77676 -12.40412 -12.22661 -12.00200 -11.53249 -11.37032 -11.21245 -10.98571 -10.79905 -10.59596 -10.38984 -10.12116 -9.89142 -9.76316 -9.11854 -8.08992 -6.22685 -0.19945 0.38929 1.44438 1.45196 1.51756 1.58713 1.76995 2.17546 2.43370 2.62114 2.86594 3.18955 3.20816 3.57757 3.79919 3.86781 3.98253 4.23162 4.25974 4.35651 4.49569 4.55764 4.66400 4.71910 4.75000 4.79929 4.85038 4.97779 5.03739 5.08894 5.21015 5.26689 5.31592 5.40292 5.53192 5.57280 5.61332 5.72012 5.77742 5.94930 5.96497 6.02483 6.36855 6.49085 6.84955 7.05833 7.36752 7.46869 7.51298 8.98103 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.002702 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.890962 B =10361.676784 C =11098.303553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.019 4.019 3 C -0.155 4.155 4 C 0.194 3.806 5 N -0.673 5.673 6 C 0.695 3.305 7 O -0.622 6.622 8 N -0.704 5.704 9 C 0.197 3.803 10 C 0.001 3.999 11 C -0.502 4.502 12 H 0.066 0.934 13 C 0.023 3.977 14 N -0.908 5.908 15 Si 0.949 3.051 16 H -0.271 1.271 17 H -0.294 1.294 18 H -0.269 1.269 19 C -0.178 4.178 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.043 4.043 23 C -0.183 4.183 24 C 0.563 3.437 25 N -0.830 5.830 26 O -0.578 6.578 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.426 0.574 32 H 0.411 0.589 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.258 0.742 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.166 0.834 41 H 0.176 0.824 42 H 0.416 0.584 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 -19.859 11.021 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.020 4.020 3 C -0.176 4.176 4 C 0.098 3.902 5 N -0.322 5.322 6 C 0.395 3.605 7 O -0.502 6.502 8 N -0.357 5.357 9 C 0.072 3.928 10 C 0.001 3.999 11 C -0.539 4.539 12 H 0.084 0.916 13 C -0.178 4.178 14 N -0.546 5.546 15 Si 0.775 3.225 16 H -0.196 1.196 17 H -0.221 1.221 18 H -0.194 1.194 19 C -0.215 4.215 20 C -0.190 4.190 21 C -0.178 4.178 22 C -0.062 4.062 23 C -0.187 4.187 24 C 0.351 3.649 25 N -0.395 5.395 26 O -0.460 6.460 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.266 0.734 32 H 0.247 0.753 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.184 0.816 41 H 0.193 0.807 42 H 0.249 0.751 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.996 -19.548 10.303 22.119 hybrid contribution 1.491 0.321 -0.571 1.629 sum 0.496 -19.227 9.732 21.556 Atomic orbital electron populations 1.20986 0.90423 1.02415 1.03199 1.19949 0.96837 0.91538 0.93708 1.20930 0.93561 0.98017 1.05109 1.17956 0.90967 0.85494 0.95823 1.42406 1.27696 1.08965 1.53131 1.16157 0.82977 0.81100 0.80223 1.90906 1.29498 1.84295 1.45485 1.44894 1.32854 1.07346 1.50561 1.20491 0.94295 0.84552 0.93427 1.19075 0.94741 0.87991 0.98137 1.20639 0.93497 1.43756 0.96057 0.91568 1.25713 1.00134 0.94157 0.97783 1.70121 1.36049 1.43385 1.05029 0.85765 0.81060 0.78743 0.76942 1.19573 1.22063 1.19418 1.23048 1.02035 1.05958 0.90437 1.22358 0.98191 0.99165 0.99251 1.21159 1.01747 0.89568 1.05353 1.21415 0.91475 0.99291 0.94021 1.19773 0.94756 0.92390 1.11830 1.18246 0.86464 0.85053 0.75164 1.43549 1.12729 1.07548 1.75672 1.90761 1.15582 1.87865 1.51799 0.90596 0.92758 0.89711 0.86969 0.73445 0.75321 0.95503 0.94238 0.93336 0.89211 0.89722 0.91701 0.91284 0.81635 0.80673 0.75140 0.75536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 8.72 71.24 0.62 -2.51 16 2 C -0.02 -0.51 5.91 -19.63 -0.12 -0.63 16 3 C -0.16 -4.67 8.24 22.35 0.18 -4.49 16 4 C 0.19 4.95 6.22 38.37 0.24 5.18 16 5 N -0.67 -17.27 5.32 -317.18 -1.69 -18.95 16 6 C 0.70 24.93 8.27 179.05 1.48 26.41 16 7 O -0.62 -27.80 14.21 -3.95 -0.06 -27.85 16 8 N -0.70 -25.23 5.41 -478.55 -2.59 -27.82 16 9 C 0.20 8.63 5.52 86.38 0.48 9.11 16 10 C 0.00 0.06 1.57 -52.93 -0.08 -0.02 16 11 C -0.50 -24.65 8.53 25.60 0.22 -24.43 16 12 H 0.07 3.08 7.82 -2.91 -0.02 3.06 16 13 C 0.02 1.17 5.42 84.66 0.46 1.63 16 14 N -0.91 -50.65 12.36 21.45 0.27 -50.39 16 15 Si 0.95 41.16 29.54 68.60 2.03 43.18 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 C -0.18 -6.81 9.95 30.62 0.30 -6.51 16 20 C -0.15 -6.80 8.99 30.62 0.28 -6.53 16 21 C -0.16 -2.69 9.95 22.35 0.22 -2.47 16 22 C -0.04 -0.62 9.51 22.50 0.21 -0.41 16 23 C -0.18 -3.94 5.88 -20.08 -0.12 -4.06 16 24 C 0.56 11.60 7.96 86.71 0.69 12.29 16 25 N -0.83 -8.23 8.82 -175.77 -1.55 -9.78 16 26 O -0.58 -16.42 14.17 -4.01 -0.06 -16.48 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.49 8.04 -2.39 -0.02 1.47 16 29 H 0.08 2.47 5.86 -2.39 -0.01 2.46 16 30 H 0.11 3.98 6.61 -2.91 -0.02 3.96 16 31 H 0.43 7.49 8.84 -92.71 -0.82 6.67 16 32 H 0.41 12.57 8.35 -92.71 -0.77 11.79 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.69 8.11 -2.39 -0.02 1.67 16 35 H 0.26 14.00 8.32 -92.70 -0.77 13.23 16 36 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 37 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.06 3.22 7.99 -2.39 -0.02 3.20 16 39 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 40 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.18 0.76 6.44 -2.91 -0.02 0.74 16 42 H 0.42 1.27 6.89 -92.71 -0.64 0.63 16 43 H 0.41 3.05 8.93 -92.71 -0.83 2.22 16 Total: -1.00 -73.30 362.73 -0.54 -73.84 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -1.96 Total: 31.68 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.07 Total: 2.57 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -5.56 Total: -106.94 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.11 Total: -44.33 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -73.30 -0.54 -73.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432062280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.339 kcal (2) G-P(sol) polarization free energy of solvation -73.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds