Wall clock time and date at job start Tue Mar 31 2020 11:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38021 * 120.00566 * 2 1 4 4 C 1.38218 * 120.21866 * 179.72368 * 3 2 1 5 5 C 1.38981 * 120.22366 * 0.51601 * 4 3 2 6 6 N 1.39986 * 119.99444 * 179.76310 * 5 4 3 7 7 C 1.34769 * 120.00115 * 42.18517 * 6 5 4 8 8 O 1.21590 * 120.00271 * 9.55451 * 7 6 5 9 9 N 1.34776 * 120.00167 * 189.55524 * 7 6 5 10 10 C 1.46503 * 119.99927 * 184.71545 * 9 7 6 11 11 C 1.53001 * 109.46747 * 184.25764 * 10 9 7 12 12 C 1.50699 * 115.55229 * 296.41400 * 11 10 9 13 13 H 1.08003 * 120.00256 * 118.01535 * 12 11 10 14 14 C 1.37882 * 119.99744 * 297.73675 * 12 11 10 15 15 N 1.31516 * 119.99745 * 172.08964 * 14 12 11 16 16 Si 1.86791 * 120.00024 * 352.08441 * 14 12 11 17 17 H 1.48499 * 109.47296 * 93.06110 * 16 14 12 18 18 H 1.48500 * 109.47188 * 213.05838 * 16 14 12 19 19 H 1.48499 * 109.47488 * 333.05750 * 16 14 12 20 20 C 1.53006 * 117.50051 * 82.08382 * 11 10 9 21 21 C 1.53000 * 117.49972 * 150.74448 * 11 10 9 22 22 C 1.38580 * 120.00400 * 359.49134 * 5 4 3 23 23 C 1.39495 * 119.78369 * 0.25107 * 22 5 4 24 24 C 1.47852 * 120.11600 * 180.02562 * 23 22 5 25 25 N 1.34772 * 120.00239 * 353.65680 * 24 23 22 26 26 O 1.21556 * 120.00176 * 173.65482 * 24 23 22 27 27 H 1.09004 * 109.47040 * 262.82767 * 1 2 3 28 28 H 1.09002 * 109.47027 * 22.81921 * 1 2 3 29 29 H 1.08992 * 109.47531 * 142.82178 * 1 2 3 30 30 H 1.07997 * 119.89202 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.88353 * 180.25866 * 4 3 2 32 32 H 0.97001 * 119.99486 * 222.18124 * 6 5 4 33 33 H 0.97000 * 119.99728 * 4.71650 * 9 7 6 34 34 H 1.09000 * 109.47111 * 64.26181 * 10 9 7 35 35 H 1.09000 * 109.47491 * 304.25914 * 10 9 7 36 36 H 0.96994 * 119.99835 * 179.97438 * 15 14 12 37 37 H 1.08991 * 117.49913 * 215.00280 * 20 11 10 38 38 H 1.08997 * 117.49481 * 0.02562 * 20 11 10 39 39 H 1.09008 * 117.49688 * 359.97438 * 21 11 10 40 40 H 1.09002 * 117.50257 * 144.97112 * 21 11 10 41 41 H 1.07998 * 120.11078 * 180.23169 * 22 5 4 42 42 H 0.96999 * 119.99576 * 359.97438 * 25 24 23 43 43 H 0.97001 * 120.00413 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1952 0.0000 4 6 3.5793 1.2004 0.0058 5 6 4.2834 0.0021 0.0008 6 7 5.6832 0.0130 0.0016 7 6 6.3499 0.8794 0.7897 8 8 5.7492 1.5286 1.6240 9 7 7.6827 1.0265 0.6530 10 6 8.4229 1.8898 1.5766 11 6 9.8876 1.9656 1.1408 12 6 10.6474 0.6650 1.1865 13 1 11.0564 0.2462 0.2789 14 6 10.8256 0.0126 2.3881 15 7 11.3497 -1.1934 2.4101 16 14 10.3226 0.8417 3.9846 17 1 8.9348 0.4444 4.3329 18 1 11.2445 0.4239 5.0712 19 1 10.3886 2.3159 3.8190 20 6 10.2431 2.9526 0.0271 21 6 10.6577 3.2456 1.4712 22 6 3.5998 -1.2033 0.0006 23 6 2.2049 -1.2088 0.0002 24 6 1.4681 -2.4907 0.0007 25 7 2.1380 -3.6531 -0.1275 26 8 0.2581 -2.4962 0.1166 27 1 -0.3633 -0.1283 1.0197 28 1 -0.3633 0.9473 -0.3986 29 1 -0.3634 -0.8187 -0.6209 30 1 1.6555 2.1295 -0.0004 31 1 4.1139 2.1388 0.0100 32 1 6.1733 -0.6032 -0.5650 33 1 8.1517 0.5607 -0.0569 34 1 8.3645 1.4784 2.5843 35 1 7.9886 2.8895 1.5666 36 1 11.4754 -1.6522 3.2554 37 1 11.0266 2.6613 -0.6724 38 1 9.4337 3.5483 -0.3948 39 1 10.1207 4.0341 1.9988 40 1 11.7138 3.1471 1.7222 41 1 4.1452 -2.1355 0.0006 42 1 3.1035 -3.6487 -0.2204 43 1 1.6546 -4.4941 -0.1276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432100455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:59 Heat of formation + Delta-G solvation = -13.558611 kcal Electronic energy + Delta-G solvation = -25846.128873 eV Core-core repulsion = 22085.080864 eV Total energy + Delta-G solvation = -3761.048009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76257 -39.82479 -38.24355 -37.13549 -34.92387 -34.16409 -33.59139 -32.27256 -31.25832 -31.09079 -27.35815 -26.21569 -24.99941 -24.14549 -21.95702 -21.76038 -21.33457 -20.15446 -19.40046 -18.36524 -18.07281 -17.04959 -16.72640 -16.16161 -15.72117 -15.45478 -15.21351 -15.08886 -14.73403 -14.42009 -14.12541 -13.94029 -13.66776 -13.41134 -13.28405 -12.99410 -12.57459 -12.31145 -12.18580 -12.15814 -11.90159 -11.57313 -11.13104 -10.78396 -10.65773 -10.35011 -10.18780 -10.09240 -9.97863 -9.75712 -9.58720 -9.25714 -9.12763 -8.91888 -8.57216 -8.47548 -8.03717 -6.26430 -4.28677 0.72092 1.16245 2.67720 2.81997 3.23359 3.28605 3.33523 3.38036 3.39677 3.75536 4.31509 4.39130 4.57696 4.59582 4.82620 4.87014 5.09239 5.12726 5.21289 5.39030 5.53002 5.59435 5.68618 5.73172 5.88922 5.90720 6.05567 6.11579 6.15193 6.20940 6.34711 6.37869 6.41565 6.47485 6.55830 6.64092 6.83505 6.88449 6.97962 7.04201 7.08093 7.19348 7.58997 8.01454 8.28743 8.33346 8.75186 8.83094 9.37668 10.84348 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002990 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.804732 B = 9363.563236 C =10055.767567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 C -0.112 4.112 4 C -0.082 4.082 5 C 0.167 3.833 6 N -0.696 5.696 7 C 0.699 3.301 8 O -0.587 6.587 9 N -0.710 5.710 10 C 0.171 3.829 11 C -0.018 4.018 12 C -0.492 4.492 13 H 0.078 0.922 14 C 0.085 3.915 15 N -0.891 5.891 16 Si 0.866 3.134 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.249 1.249 20 C -0.180 4.180 21 C -0.185 4.185 22 C -0.109 4.109 23 C -0.131 4.131 24 C 0.567 3.433 25 N -0.852 5.852 26 O -0.537 6.537 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.408 0.592 33 H 0.406 0.594 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.266 0.734 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.402 0.598 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.374 -0.279 -8.011 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.042 4.042 3 C -0.131 4.131 4 C -0.103 4.103 5 C 0.072 3.928 6 N -0.345 5.345 7 C 0.399 3.601 8 O -0.464 6.464 9 N -0.363 5.363 10 C 0.047 3.953 11 C -0.019 4.019 12 C -0.529 4.529 13 H 0.096 0.904 14 C -0.119 4.119 15 N -0.527 5.527 16 Si 0.693 3.307 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.173 1.173 20 C -0.217 4.217 21 C -0.224 4.224 22 C -0.131 4.131 23 C -0.135 4.135 24 C 0.354 3.646 25 N -0.416 5.416 26 O -0.415 6.415 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.244 0.756 33 H 0.241 0.759 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.231 0.769 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.492 0.377 -7.021 17.928 hybrid contribution 0.899 -0.629 0.448 1.185 sum -15.593 -0.253 -6.573 16.923 Atomic orbital electron populations 1.21021 0.90078 1.02683 1.03475 1.19973 0.96770 0.91390 0.96093 1.20918 0.93417 0.97623 1.01113 1.21322 0.94083 0.97861 0.96994 1.17249 0.82273 0.93240 1.00087 1.42670 1.04080 1.40786 1.47013 1.16000 0.82416 0.80508 0.81164 1.90922 1.67877 1.50081 1.37562 1.45032 1.04815 1.50799 1.35642 1.20999 0.90811 0.91779 0.91737 1.19603 0.90989 0.91707 0.99629 1.20229 1.34539 1.02538 0.95615 0.90390 1.24910 0.93899 0.94068 0.99057 1.69893 1.43966 1.11859 1.26940 0.87045 0.78261 0.82042 0.83339 1.20363 1.21792 1.17283 1.22798 1.02692 1.04476 0.91732 1.23051 1.01019 1.00532 0.97763 1.21023 0.92969 0.97177 1.01887 1.19398 0.92607 0.93107 1.08365 1.18239 0.86857 0.84165 0.75325 1.43792 1.12052 1.08522 1.77245 1.90765 1.13797 1.87281 1.49679 0.90867 0.92488 0.89057 0.85012 0.84878 0.75575 0.75929 0.92621 0.93074 0.92402 0.89625 0.90851 0.91059 0.89231 0.85303 0.76874 0.76526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.70 36.00 0.31 -0.93 16 2 C -0.04 -0.48 5.91 -104.20 -0.62 -1.09 16 3 C -0.11 -1.29 9.65 -39.67 -0.38 -1.67 16 4 C -0.08 -1.08 8.68 -39.31 -0.34 -1.42 16 5 C 0.17 2.17 6.06 -83.73 -0.51 1.66 16 6 N -0.70 -9.27 5.33 -14.26 -0.08 -9.34 16 7 C 0.70 12.29 8.17 -86.93 -0.71 11.58 16 8 O -0.59 -12.35 14.86 5.29 0.08 -12.27 16 9 N -0.71 -12.73 5.47 -65.22 -0.36 -13.09 16 10 C 0.17 3.49 5.14 -4.04 -0.02 3.47 16 11 C -0.02 -0.38 0.87 -155.66 -0.14 -0.51 16 12 C -0.49 -12.33 9.09 -34.44 -0.31 -12.64 16 13 H 0.08 2.11 8.06 -52.48 -0.42 1.69 16 14 C 0.08 2.25 5.46 -17.82 -0.10 2.15 16 15 N -0.89 -25.32 13.96 55.43 0.77 -24.54 16 16 Si 0.87 20.70 24.93 -169.99 -4.24 16.46 16 17 H -0.28 -6.81 6.94 56.52 0.39 -6.42 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.25 -5.61 5.87 56.52 0.33 -5.27 16 20 C -0.18 -3.27 9.96 -26.69 -0.27 -3.54 16 21 C -0.19 -3.62 8.26 -26.69 -0.22 -3.84 16 22 C -0.11 -1.19 9.44 -38.99 -0.37 -1.56 16 23 C -0.13 -1.52 5.87 -104.99 -0.62 -2.14 16 24 C 0.57 6.38 7.97 -12.33 -0.10 6.28 16 25 N -0.85 -6.28 8.82 30.53 0.27 -6.01 16 26 O -0.54 -7.48 14.19 5.32 0.08 -7.40 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.49 8.03 -51.93 -0.42 0.07 16 29 H 0.09 1.07 5.89 -51.93 -0.31 0.77 16 30 H 0.13 1.22 8.05 -52.49 -0.42 0.80 16 31 H 0.13 1.87 7.19 -52.49 -0.38 1.50 16 32 H 0.41 4.18 8.87 -40.82 -0.36 3.82 16 33 H 0.41 6.66 8.33 -40.82 -0.34 6.32 16 34 H 0.06 1.28 4.78 -51.93 -0.25 1.03 16 35 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 40 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 41 H 0.13 1.04 6.45 -52.49 -0.34 0.70 16 42 H 0.40 2.12 6.90 -40.82 -0.28 1.83 16 43 H 0.40 2.37 8.93 -40.82 -0.36 2.01 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -32.74 355.29 -8.13 -40.87 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -5.63 Total: 14.18 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -4.38 Total: -4.20 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.61 Total: -52.99 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.15 Total: -19.67 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.24 Total: 16.46 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.74 -8.13 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432100455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.309 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds