Wall clock time and date at job start Tue Mar 31 2020 11:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38021 * 120.00566 * 2 1 4 4 C 1.38218 * 120.21866 * 179.72368 * 3 2 1 5 5 C 1.38981 * 120.22366 * 0.51601 * 4 3 2 6 6 N 1.39986 * 119.99444 * 179.76310 * 5 4 3 7 7 C 1.34769 * 120.00115 * 42.18517 * 6 5 4 8 8 O 1.21590 * 120.00271 * 9.55451 * 7 6 5 9 9 N 1.34776 * 120.00167 * 189.55524 * 7 6 5 10 10 C 1.46503 * 119.99927 * 184.71545 * 9 7 6 11 11 C 1.53001 * 109.46747 * 184.25764 * 10 9 7 12 12 C 1.50699 * 115.55229 * 296.41400 * 11 10 9 13 13 H 1.08003 * 120.00256 * 118.01535 * 12 11 10 14 14 C 1.37882 * 119.99744 * 297.73675 * 12 11 10 15 15 N 1.31516 * 119.99745 * 172.08964 * 14 12 11 16 16 Si 1.86791 * 120.00024 * 352.08441 * 14 12 11 17 17 H 1.48499 * 109.47296 * 93.06110 * 16 14 12 18 18 H 1.48500 * 109.47188 * 213.05838 * 16 14 12 19 19 H 1.48499 * 109.47488 * 333.05750 * 16 14 12 20 20 C 1.53006 * 117.50051 * 82.08382 * 11 10 9 21 21 C 1.53000 * 117.49972 * 150.74448 * 11 10 9 22 22 C 1.38580 * 120.00400 * 359.49134 * 5 4 3 23 23 C 1.39495 * 119.78369 * 0.25107 * 22 5 4 24 24 C 1.47852 * 120.11600 * 180.02562 * 23 22 5 25 25 N 1.34772 * 120.00239 * 353.65680 * 24 23 22 26 26 O 1.21556 * 120.00176 * 173.65482 * 24 23 22 27 27 H 1.09004 * 109.47040 * 262.82767 * 1 2 3 28 28 H 1.09002 * 109.47027 * 22.81921 * 1 2 3 29 29 H 1.08992 * 109.47531 * 142.82178 * 1 2 3 30 30 H 1.07997 * 119.89202 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.88353 * 180.25866 * 4 3 2 32 32 H 0.97001 * 119.99486 * 222.18124 * 6 5 4 33 33 H 0.97000 * 119.99728 * 4.71650 * 9 7 6 34 34 H 1.09000 * 109.47111 * 64.26181 * 10 9 7 35 35 H 1.09000 * 109.47491 * 304.25914 * 10 9 7 36 36 H 0.96994 * 119.99835 * 179.97438 * 15 14 12 37 37 H 1.08991 * 117.49913 * 215.00280 * 20 11 10 38 38 H 1.08997 * 117.49481 * 0.02562 * 20 11 10 39 39 H 1.09008 * 117.49688 * 359.97438 * 21 11 10 40 40 H 1.09002 * 117.50257 * 144.97112 * 21 11 10 41 41 H 1.07998 * 120.11078 * 180.23169 * 22 5 4 42 42 H 0.96999 * 119.99576 * 359.97438 * 25 24 23 43 43 H 0.97001 * 120.00413 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1952 0.0000 4 6 3.5793 1.2004 0.0058 5 6 4.2834 0.0021 0.0008 6 7 5.6832 0.0130 0.0016 7 6 6.3499 0.8794 0.7897 8 8 5.7492 1.5286 1.6240 9 7 7.6827 1.0265 0.6530 10 6 8.4229 1.8898 1.5766 11 6 9.8876 1.9656 1.1408 12 6 10.6474 0.6650 1.1865 13 1 11.0564 0.2462 0.2789 14 6 10.8256 0.0126 2.3881 15 7 11.3497 -1.1934 2.4101 16 14 10.3226 0.8417 3.9846 17 1 8.9348 0.4444 4.3329 18 1 11.2445 0.4239 5.0712 19 1 10.3886 2.3159 3.8190 20 6 10.2431 2.9526 0.0271 21 6 10.6577 3.2456 1.4712 22 6 3.5998 -1.2033 0.0006 23 6 2.2049 -1.2088 0.0002 24 6 1.4681 -2.4907 0.0007 25 7 2.1380 -3.6531 -0.1275 26 8 0.2581 -2.4962 0.1166 27 1 -0.3633 -0.1283 1.0197 28 1 -0.3633 0.9473 -0.3986 29 1 -0.3634 -0.8187 -0.6209 30 1 1.6555 2.1295 -0.0004 31 1 4.1139 2.1388 0.0100 32 1 6.1733 -0.6032 -0.5650 33 1 8.1517 0.5607 -0.0569 34 1 8.3645 1.4784 2.5843 35 1 7.9886 2.8895 1.5666 36 1 11.4754 -1.6522 3.2554 37 1 11.0266 2.6613 -0.6724 38 1 9.4337 3.5483 -0.3948 39 1 10.1207 4.0341 1.9988 40 1 11.7138 3.1471 1.7222 41 1 4.1452 -2.1355 0.0006 42 1 3.1035 -3.6487 -0.2204 43 1 1.6546 -4.4941 -0.1276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432100455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:58 Heat of formation + Delta-G solvation = -38.366399 kcal Electronic energy + Delta-G solvation = -25847.204619 eV Core-core repulsion = 22085.080864 eV Total energy + Delta-G solvation = -3762.123755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82324 -40.94659 -39.35631 -38.61543 -36.04081 -35.07910 -34.98322 -34.27265 -32.26169 -31.97038 -28.75800 -27.64904 -26.56158 -25.06083 -23.27924 -22.81965 -22.52690 -21.33099 -20.98009 -19.50367 -19.30750 -18.32055 -17.85850 -17.34166 -17.08053 -16.71347 -16.41031 -16.08160 -16.01324 -15.78541 -15.48833 -15.00660 -14.88980 -14.84025 -14.51510 -14.22817 -14.17621 -13.86714 -13.29853 -13.03780 -12.99909 -12.87623 -12.65983 -12.43929 -12.17263 -12.07767 -11.57855 -11.39774 -11.24921 -11.00881 -10.82591 -10.69485 -10.61665 -10.37311 -10.03722 -9.96135 -9.08630 -8.31747 -6.33918 -0.20115 0.22416 1.31708 1.39652 1.48237 1.58610 1.76542 2.09878 2.34553 2.53478 2.79206 2.93400 3.19812 3.45272 3.75124 3.78737 3.95204 4.02548 4.18662 4.31739 4.36025 4.39748 4.47968 4.54997 4.69093 4.78248 4.83880 4.88327 4.94330 5.01652 5.08481 5.17128 5.26702 5.32342 5.41718 5.49899 5.55399 5.58600 5.69502 5.89542 5.91404 5.98480 6.30693 6.38275 6.72440 7.02463 7.27043 7.34318 7.48454 8.82267 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002990 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.804732 B = 9363.563236 C =10055.767567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.048 4.048 3 C -0.110 4.110 4 C -0.096 4.096 5 C 0.144 3.856 6 N -0.679 5.679 7 C 0.699 3.301 8 O -0.622 6.622 9 N -0.710 5.710 10 C 0.179 3.821 11 C -0.042 4.042 12 C -0.475 4.475 13 H 0.049 0.951 14 C 0.038 3.962 15 N -0.936 5.936 16 Si 0.912 3.088 17 H -0.290 1.290 18 H -0.298 1.298 19 H -0.225 1.225 20 C -0.153 4.153 21 C -0.184 4.184 22 C -0.097 4.097 23 C -0.139 4.139 24 C 0.564 3.436 25 N -0.832 5.832 26 O -0.568 6.568 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.423 0.577 33 H 0.412 0.588 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.264 0.736 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.158 0.842 42 H 0.414 0.586 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.264 0.594 -8.770 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.050 4.050 3 C -0.129 4.129 4 C -0.116 4.116 5 C 0.050 3.950 6 N -0.329 5.329 7 C 0.400 3.600 8 O -0.503 6.503 9 N -0.363 5.363 10 C 0.054 3.946 11 C -0.043 4.043 12 C -0.513 4.513 13 H 0.067 0.933 14 C -0.161 4.161 15 N -0.576 5.576 16 Si 0.739 3.261 17 H -0.217 1.217 18 H -0.225 1.225 19 H -0.148 1.148 20 C -0.190 4.190 21 C -0.222 4.222 22 C -0.118 4.118 23 C -0.143 4.143 24 C 0.351 3.649 25 N -0.397 5.397 26 O -0.449 6.449 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.170 0.830 31 H 0.138 0.862 32 H 0.262 0.738 33 H 0.248 0.752 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.175 0.825 42 H 0.246 0.754 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -17.361 1.221 -7.832 19.085 hybrid contribution 1.136 -0.937 0.576 1.581 sum -16.225 0.285 -7.256 17.776 Atomic orbital electron populations 1.20973 0.89379 1.03412 1.03002 1.20232 0.97445 0.91652 0.95687 1.21101 0.92853 0.98535 1.00374 1.21360 0.94854 0.97559 0.97872 1.17442 0.81899 0.94030 1.01672 1.42403 1.04359 1.39914 1.46238 1.16091 0.82128 0.80666 0.81152 1.90894 1.68495 1.51676 1.39242 1.44911 1.05040 1.50840 1.35496 1.20770 0.90518 0.92516 0.90811 1.19446 0.91037 0.90638 1.03174 1.20370 1.33163 1.03755 0.93992 0.93330 1.25503 0.94479 0.94430 1.01696 1.70004 1.46740 1.13499 1.27322 0.86307 0.76794 0.82680 0.80302 1.21668 1.22528 1.14753 1.22841 1.02929 1.02251 0.90991 1.23101 1.00535 0.99479 0.99104 1.21216 0.92772 0.97643 1.00204 1.19586 0.92945 0.93503 1.08257 1.18246 0.86506 0.84855 0.75325 1.43634 1.12734 1.07912 1.75410 1.90758 1.15030 1.87728 1.51433 0.91447 0.90415 0.90106 0.82961 0.86157 0.73789 0.75182 0.95328 0.91924 0.92689 0.89551 0.88189 0.88983 0.89984 0.82451 0.75429 0.75384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.70 71.23 0.62 -1.63 16 2 C -0.05 -1.08 5.91 -19.59 -0.12 -1.20 16 3 C -0.11 -2.40 9.65 22.21 0.21 -2.18 16 4 C -0.10 -2.45 8.68 22.44 0.19 -2.25 16 5 C 0.14 3.55 6.06 38.10 0.23 3.78 16 6 N -0.68 -17.13 5.33 -317.28 -1.69 -18.82 16 7 C 0.70 23.90 8.17 179.06 1.46 25.37 16 8 O -0.62 -25.84 14.86 -4.00 -0.06 -25.90 16 9 N -0.71 -24.61 5.47 -478.53 -2.62 -27.23 16 10 C 0.18 7.03 5.14 86.38 0.44 7.47 16 11 C -0.04 -1.68 0.87 -52.93 -0.05 -1.72 16 12 C -0.48 -23.74 9.09 25.60 0.23 -23.50 16 13 H 0.05 2.67 8.06 -2.91 -0.02 2.64 16 14 C 0.04 2.04 5.46 84.66 0.46 2.50 16 15 N -0.94 -54.38 13.96 21.45 0.30 -54.08 16 16 Si 0.91 42.76 24.93 68.60 1.71 44.47 16 17 H -0.29 -14.07 6.94 99.48 0.69 -13.38 16 18 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 19 H -0.23 -9.53 5.87 99.48 0.58 -8.94 16 20 C -0.15 -5.10 9.96 30.62 0.30 -4.79 16 21 C -0.18 -6.65 8.26 30.62 0.25 -6.40 16 22 C -0.10 -1.94 9.44 22.65 0.21 -1.72 16 23 C -0.14 -3.01 5.87 -20.10 -0.12 -3.13 16 24 C 0.56 11.84 7.97 86.79 0.69 12.53 16 25 N -0.83 -10.42 8.82 -175.60 -1.55 -11.97 16 26 O -0.57 -15.37 14.19 -3.89 -0.06 -15.42 16 27 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.08 1.20 8.03 -2.39 -0.02 1.18 16 29 H 0.08 1.84 5.89 -2.39 -0.01 1.83 16 30 H 0.15 2.55 8.05 -2.91 -0.02 2.53 16 31 H 0.12 3.36 7.19 -2.91 -0.02 3.34 16 32 H 0.42 7.91 8.87 -92.71 -0.82 7.08 16 33 H 0.41 13.04 8.33 -92.71 -0.77 12.27 16 34 H 0.03 1.29 4.78 -2.39 -0.01 1.27 16 35 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 40 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.16 2.07 6.45 -2.91 -0.02 2.06 16 42 H 0.41 3.19 6.90 -92.71 -0.64 2.55 16 43 H 0.41 3.97 8.93 -92.71 -0.83 3.14 16 Total: -1.00 -71.35 355.29 -1.02 -72.36 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -2.10 Total: 33.49 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 5.04 Total: 3.11 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -5.56 Total: -112.10 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.11 Total: -41.33 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.71 Total: 44.47 kcal Total: -71.35 -1.02 -72.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432100455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.996 kcal (2) G-P(sol) polarization free energy of solvation -71.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds