Wall clock time and date at job start Tue Mar 31 2020 11:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00444 * 2 1 4 4 N 1.46500 * 109.47446 * 124.99944 * 3 2 1 5 5 C 1.46500 * 119.99931 * 270.00461 * 4 3 2 6 6 C 1.50700 * 109.47133 * 269.99503 * 5 4 3 7 7 H 1.08000 * 119.99989 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99927 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00483 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99694 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46967 * 60.00753 * 10 8 6 12 12 H 1.48501 * 109.46941 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47503 * 300.00731 * 10 8 6 14 14 C 1.34774 * 120.00050 * 89.99680 * 4 3 2 15 15 O 1.21582 * 119.99981 * 179.97438 * 14 4 3 16 16 N 1.34778 * 119.99783 * 0.02562 * 14 4 3 17 17 C 1.39431 * 119.99798 * 175.36402 * 16 14 4 18 18 C 1.39160 * 119.92471 * 35.86604 * 17 16 14 19 19 C 1.37646 * 120.07261 * 180.27433 * 18 17 16 20 20 C 1.39777 * 119.92391 * 359.49487 * 19 18 17 21 21 C 1.47581 * 120.07448 * 180.23262 * 20 19 18 22 22 N 1.34776 * 119.99829 * 353.49207 * 21 20 19 23 23 O 1.21588 * 120.00267 * 173.48911 * 21 20 19 24 24 C 1.39744 * 119.85155 * 0.24973 * 20 19 18 25 25 C 1.50700 * 120.03158 * 180.02562 * 24 20 19 26 26 C 1.37671 * 119.92555 * 0.02562 * 24 20 19 27 27 H 1.07994 * 120.00048 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99444 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99745 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46788 * 5.00155 * 3 2 1 31 31 H 1.08996 * 109.47387 * 245.00453 * 3 2 1 32 32 H 1.08999 * 109.47545 * 29.99720 * 5 4 3 33 33 H 1.08999 * 109.47070 * 149.99582 * 5 4 3 34 34 H 0.97000 * 120.00635 * 179.97438 * 9 8 6 35 35 H 0.97002 * 119.99994 * 355.36295 * 16 14 4 36 36 H 1.08001 * 119.96442 * 0.02562 * 18 17 16 37 37 H 1.07991 * 120.03739 * 179.76753 * 19 18 17 38 38 H 0.97008 * 120.00140 * 359.97438 * 22 21 20 39 39 H 0.96998 * 120.00330 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.46938 * 83.09369 * 25 24 20 41 41 H 1.09008 * 109.46706 * 203.08522 * 25 24 20 42 42 H 1.08997 * 109.47486 * 323.08757 * 25 24 20 43 43 H 1.08002 * 119.96577 * 179.97438 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8445 3.3435 2.4804 7 1 3.3035 3.8370 1.6365 8 6 2.5186 4.0666 3.6082 9 7 1.9592 3.4659 4.6357 10 14 2.8732 5.8993 3.6774 11 1 2.1382 6.5872 2.5855 12 1 2.4322 6.4397 4.9884 13 1 4.3312 6.1281 3.5133 14 6 4.2498 0.8660 0.9824 15 8 5.0219 0.8886 1.9213 16 7 4.6499 0.3759 -0.2076 17 6 5.9755 -0.0162 -0.3899 18 6 6.6730 -0.6131 0.6559 19 6 7.9834 -0.9963 0.4811 20 6 8.6102 -0.7949 -0.7519 21 6 10.0135 -1.2092 -0.9446 22 7 10.7326 -1.6606 0.1021 23 8 10.5209 -1.1433 -2.0476 24 6 7.9052 -0.2001 -1.8017 25 6 8.5768 0.0184 -3.1329 26 6 6.5965 0.1860 -1.6183 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4025 -0.9314 32 1 1.4889 1.6966 2.5460 33 1 3.0990 1.3602 3.2259 34 1 1.7303 3.9745 5.4293 35 1 4.0158 0.2961 -0.9373 36 1 6.1868 -0.7722 1.6071 37 1 8.5253 -1.4560 1.2943 38 1 10.3279 -1.7129 0.9822 39 1 11.6550 -1.9326 -0.0244 40 1 8.5278 -0.8989 -3.7195 41 1 8.0685 0.8200 -3.6690 42 1 9.6196 0.2924 -2.9732 43 1 6.0511 0.6461 -2.4290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432787503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:06 Heat of formation + Delta-G solvation = -9.697617 kcal Electronic energy + Delta-G solvation = -25993.076918 eV Core-core repulsion = 22232.196334 eV Total energy + Delta-G solvation = -3760.880584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66535 -39.78158 -38.05515 -35.91369 -34.65597 -34.15949 -33.20213 -32.33474 -31.94000 -29.85001 -27.51259 -27.04512 -25.64154 -23.91023 -22.71494 -21.92512 -20.73076 -20.04812 -19.33402 -18.02592 -17.79651 -16.94809 -16.73223 -16.51396 -15.35134 -15.20667 -15.07232 -14.82861 -14.66470 -14.52220 -14.23230 -13.67965 -13.39978 -13.22007 -13.04097 -12.89003 -12.59946 -12.36311 -12.10294 -11.98276 -11.82491 -11.34948 -11.19931 -11.15407 -10.95994 -10.63182 -10.22676 -10.15773 -9.90205 -9.77297 -9.70155 -9.34595 -9.30073 -8.74813 -8.46975 -8.12131 -7.72820 -6.08330 -4.13308 0.85571 1.42405 2.32053 2.80865 3.09015 3.29633 3.34359 3.38104 3.43932 3.64007 3.94992 4.30681 4.45039 4.73990 4.80755 4.87680 5.08711 5.25218 5.25883 5.27948 5.38033 5.44926 5.46475 5.73836 5.79905 5.85486 5.90765 6.05910 6.06079 6.29449 6.36012 6.49635 6.59054 6.66457 6.67499 6.71322 6.84505 7.09245 7.22212 7.28001 7.41211 7.56386 7.88556 8.15959 8.17459 8.43445 8.86400 9.09941 9.52068 10.99575 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.003300 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.603517 B = 8483.448964 C = 9568.418950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 C 0.135 3.865 4 N -0.600 5.600 5 C 0.262 3.738 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.698 3.302 15 O -0.563 6.563 16 N -0.695 5.695 17 C 0.218 3.782 18 C -0.138 4.138 19 C -0.060 4.060 20 C -0.181 4.181 21 C 0.569 3.431 22 N -0.855 5.855 23 O -0.544 6.544 24 C 0.000 4.000 25 C -0.117 4.117 26 C -0.171 4.171 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.401 0.599 39 H 0.402 0.598 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 -10.922 -12.195 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C 0.011 3.989 4 N -0.333 5.333 5 C 0.143 3.857 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.400 3.600 15 O -0.439 6.439 16 N -0.344 5.344 17 C 0.120 3.880 18 C -0.158 4.158 19 C -0.079 4.079 20 C -0.185 4.185 21 C 0.357 3.643 22 N -0.419 5.419 23 O -0.423 6.423 24 C -0.002 4.002 25 C -0.173 4.173 26 C -0.192 4.192 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.167 0.833 37 H 0.143 0.857 38 H 0.231 0.769 39 H 0.232 0.768 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.445 -10.670 -11.984 17.689 hybrid contribution -0.172 0.878 0.303 0.945 sum 7.273 -9.792 -11.681 16.889 Atomic orbital electron populations 1.23841 0.95799 1.01901 0.99832 1.23437 0.96567 0.98850 1.00561 1.20563 0.93252 0.95816 0.89278 1.47616 1.08726 1.62678 1.14328 1.19254 0.95314 0.93624 0.77492 1.21404 1.40752 0.93335 1.01343 0.92505 1.24907 0.94976 0.98759 0.95280 1.69913 1.41881 1.36313 1.05182 0.86565 0.78874 0.84853 0.77172 1.20252 1.21145 1.20174 1.15946 0.83336 0.78601 0.82129 1.90899 1.52572 1.61657 1.38777 1.42993 1.09270 1.66808 1.15315 1.17763 0.84085 0.92012 0.94106 1.21320 0.94920 0.99152 1.00443 1.21095 0.94583 0.97033 0.95207 1.19551 0.94136 1.09269 0.95583 1.18233 0.86102 0.76010 0.83964 1.43799 1.16768 1.69281 1.12033 1.90749 1.72681 1.54544 1.24373 1.19678 0.92358 0.92988 0.95161 1.21044 1.02170 1.01671 0.92463 1.20736 0.94750 1.06106 0.97592 0.88665 0.88162 0.87759 0.88885 0.91407 0.94664 0.93676 0.92608 0.75888 0.83339 0.85656 0.76932 0.76794 0.90816 0.92503 0.88877 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 14.32 29.01 0.42 -1.68 16 2 C -0.17 -2.28 9.85 -36.03 -0.35 -2.63 16 3 C 0.14 2.03 5.57 -5.20 -0.03 2.00 16 4 N -0.60 -12.04 2.44 -182.19 -0.44 -12.48 16 5 C 0.26 6.60 5.16 -5.19 -0.03 6.57 16 6 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 10 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.70 14.00 8.11 -86.92 -0.70 13.29 16 15 O -0.56 -13.54 13.38 5.29 0.07 -13.47 16 16 N -0.70 -10.54 5.15 -14.22 -0.07 -10.61 16 17 C 0.22 3.23 6.28 -83.73 -0.53 2.71 16 18 C -0.14 -2.07 8.66 -39.46 -0.34 -2.42 16 19 C -0.06 -0.74 9.51 -39.22 -0.37 -1.11 16 20 C -0.18 -2.32 5.88 -104.95 -0.62 -2.93 16 21 C 0.57 6.93 7.96 -12.45 -0.10 6.83 16 22 N -0.86 -6.96 8.82 30.47 0.27 -6.69 16 23 O -0.54 -8.03 14.18 5.29 0.07 -7.95 16 24 C 0.00 0.00 5.91 -104.27 -0.62 -0.62 16 25 C -0.12 -1.36 8.71 36.01 0.31 -1.05 16 26 C -0.17 -2.18 9.57 -39.46 -0.38 -2.56 16 27 H 0.10 0.98 8.06 -52.49 -0.42 0.55 16 28 H 0.10 1.18 7.84 -52.49 -0.41 0.76 16 29 H 0.10 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 31 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.40 4.82 6.62 -40.82 -0.27 4.55 16 36 H 0.15 2.52 6.26 -52.49 -0.33 2.19 16 37 H 0.13 1.13 6.45 -52.49 -0.34 0.79 16 38 H 0.40 2.42 6.89 -40.82 -0.28 2.14 16 39 H 0.40 2.60 8.93 -40.82 -0.36 2.24 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.56 8.03 -51.92 -0.42 0.14 16 42 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 43 H 0.13 1.37 8.05 -52.49 -0.42 0.94 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -34.34 363.43 -8.16 -42.50 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.49 Total: 8.83 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -3.76 Total: 3.13 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.49 Total: -55.06 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.15 Total: -21.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.34 -8.16 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432787503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.801 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds