Wall clock time and date at job start Tue Mar 31 2020 11:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00444 * 2 1 4 4 N 1.46500 * 109.47446 * 124.99944 * 3 2 1 5 5 C 1.46500 * 119.99931 * 270.00461 * 4 3 2 6 6 C 1.50700 * 109.47133 * 269.99503 * 5 4 3 7 7 H 1.08000 * 119.99989 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99927 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00483 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99694 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46967 * 60.00753 * 10 8 6 12 12 H 1.48501 * 109.46941 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47503 * 300.00731 * 10 8 6 14 14 C 1.34774 * 120.00050 * 89.99680 * 4 3 2 15 15 O 1.21582 * 119.99981 * 179.97438 * 14 4 3 16 16 N 1.34778 * 119.99783 * 0.02562 * 14 4 3 17 17 C 1.39431 * 119.99798 * 175.36402 * 16 14 4 18 18 C 1.39160 * 119.92471 * 35.86604 * 17 16 14 19 19 C 1.37646 * 120.07261 * 180.27433 * 18 17 16 20 20 C 1.39777 * 119.92391 * 359.49487 * 19 18 17 21 21 C 1.47581 * 120.07448 * 180.23262 * 20 19 18 22 22 N 1.34776 * 119.99829 * 353.49207 * 21 20 19 23 23 O 1.21588 * 120.00267 * 173.48911 * 21 20 19 24 24 C 1.39744 * 119.85155 * 0.24973 * 20 19 18 25 25 C 1.50700 * 120.03158 * 180.02562 * 24 20 19 26 26 C 1.37671 * 119.92555 * 0.02562 * 24 20 19 27 27 H 1.07994 * 120.00048 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99444 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99745 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46788 * 5.00155 * 3 2 1 31 31 H 1.08996 * 109.47387 * 245.00453 * 3 2 1 32 32 H 1.08999 * 109.47545 * 29.99720 * 5 4 3 33 33 H 1.08999 * 109.47070 * 149.99582 * 5 4 3 34 34 H 0.97000 * 120.00635 * 179.97438 * 9 8 6 35 35 H 0.97002 * 119.99994 * 355.36295 * 16 14 4 36 36 H 1.08001 * 119.96442 * 0.02562 * 18 17 16 37 37 H 1.07991 * 120.03739 * 179.76753 * 19 18 17 38 38 H 0.97008 * 120.00140 * 359.97438 * 22 21 20 39 39 H 0.96998 * 120.00330 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.46938 * 83.09369 * 25 24 20 41 41 H 1.09008 * 109.46706 * 203.08522 * 25 24 20 42 42 H 1.08997 * 109.47486 * 323.08757 * 25 24 20 43 43 H 1.08002 * 119.96577 * 179.97438 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8445 3.3435 2.4804 7 1 3.3035 3.8370 1.6365 8 6 2.5186 4.0666 3.6082 9 7 1.9592 3.4659 4.6357 10 14 2.8732 5.8993 3.6774 11 1 2.1382 6.5872 2.5855 12 1 2.4322 6.4397 4.9884 13 1 4.3312 6.1281 3.5133 14 6 4.2498 0.8660 0.9824 15 8 5.0219 0.8886 1.9213 16 7 4.6499 0.3759 -0.2076 17 6 5.9755 -0.0162 -0.3899 18 6 6.6730 -0.6131 0.6559 19 6 7.9834 -0.9963 0.4811 20 6 8.6102 -0.7949 -0.7519 21 6 10.0135 -1.2092 -0.9446 22 7 10.7326 -1.6606 0.1021 23 8 10.5209 -1.1433 -2.0476 24 6 7.9052 -0.2001 -1.8017 25 6 8.5768 0.0184 -3.1329 26 6 6.5965 0.1860 -1.6183 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4025 -0.9314 32 1 1.4889 1.6966 2.5460 33 1 3.0990 1.3602 3.2259 34 1 1.7303 3.9745 5.4293 35 1 4.0158 0.2961 -0.9373 36 1 6.1868 -0.7722 1.6071 37 1 8.5253 -1.4560 1.2943 38 1 10.3279 -1.7129 0.9822 39 1 11.6550 -1.9326 -0.0244 40 1 8.5278 -0.8989 -3.7195 41 1 8.0685 0.8200 -3.6690 42 1 9.6196 0.2924 -2.9732 43 1 6.0511 0.6461 -2.4290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432787503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:05 Heat of formation + Delta-G solvation = -33.292957 kcal Electronic energy + Delta-G solvation = -25994.100088 eV Core-core repulsion = 22232.196334 eV Total energy + Delta-G solvation = -3761.903754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90886 -40.95897 -39.19255 -37.33996 -36.02692 -35.05587 -34.95928 -33.77089 -33.05836 -31.07631 -29.28445 -28.02233 -26.99919 -25.47313 -24.09857 -23.06924 -21.84600 -21.15782 -20.63425 -19.28397 -18.83604 -18.56601 -18.15717 -17.73070 -16.84109 -16.61282 -16.08020 -16.04375 -15.94665 -15.85800 -15.64903 -14.73156 -14.61441 -14.52919 -14.20504 -14.16241 -14.05177 -13.66737 -13.30938 -13.23589 -13.03902 -12.99117 -12.82624 -12.57516 -12.27345 -12.23528 -12.18039 -11.71372 -11.39816 -11.05034 -10.75728 -10.62783 -10.57753 -10.35211 -9.78878 -9.61300 -9.08204 -8.20783 -6.35091 -0.19933 0.38665 1.24383 1.37983 1.41619 1.48766 1.73404 1.78867 2.22623 2.39786 2.62080 2.85892 2.99952 3.09689 3.79210 3.86193 3.94157 4.00130 4.17784 4.24617 4.32231 4.42582 4.42768 4.75999 4.78516 4.87029 4.90269 4.95197 5.03695 5.07474 5.20632 5.29164 5.31207 5.47273 5.50755 5.55834 5.69076 5.73850 5.89751 5.94684 5.96754 6.04098 6.07069 6.43482 6.73330 6.98106 7.31531 7.33063 7.57787 8.85697 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.003300 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.603517 B = 8483.448964 C = 9568.418950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.132 3.868 4 N -0.605 5.605 5 C 0.282 3.718 6 C -0.544 4.544 7 H 0.052 0.948 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.963 3.037 11 H -0.261 1.261 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.696 3.304 15 O -0.612 6.612 16 N -0.675 5.675 17 C 0.194 3.806 18 C -0.159 4.159 19 C -0.052 4.052 20 C -0.184 4.184 21 C 0.566 3.434 22 N -0.835 5.835 23 O -0.572 6.572 24 C -0.010 4.010 25 C -0.111 4.111 26 C -0.159 4.159 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.027 0.973 33 H 0.001 0.999 34 H 0.267 0.733 35 H 0.421 0.579 36 H 0.123 0.877 37 H 0.155 0.845 38 H 0.413 0.587 39 H 0.413 0.587 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.292 -10.764 -14.011 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.010 3.990 4 N -0.338 5.338 5 C 0.160 3.840 6 C -0.582 4.582 7 H 0.070 0.930 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.185 1.185 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.398 3.602 15 O -0.491 6.491 16 N -0.325 5.325 17 C 0.097 3.903 18 C -0.179 4.179 19 C -0.071 4.071 20 C -0.188 4.188 21 C 0.353 3.647 22 N -0.399 5.399 23 O -0.454 6.454 24 C -0.012 4.012 25 C -0.167 4.167 26 C -0.180 4.180 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.261 0.739 36 H 0.141 0.859 37 H 0.173 0.827 38 H 0.245 0.755 39 H 0.245 0.755 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.814 -10.550 -13.849 19.082 hybrid contribution -0.239 0.736 0.857 1.155 sum 7.575 -9.813 -12.992 17.958 Atomic orbital electron populations 1.24067 0.95489 1.02986 0.97582 1.23313 0.96923 0.98027 1.02520 1.20809 0.92830 0.96809 0.88592 1.47426 1.09786 1.62575 1.14058 1.18642 0.93929 0.92362 0.79036 1.21686 1.40620 0.94558 1.01376 0.92975 1.25770 0.94677 1.03411 0.94877 1.70027 1.42715 1.38086 1.05736 0.85538 0.78376 0.79435 0.77875 1.18535 1.20361 1.20587 1.16078 0.82799 0.78464 0.82896 1.90863 1.53920 1.63532 1.40827 1.42583 1.09990 1.65906 1.13978 1.17977 0.83906 0.93286 0.95086 1.21257 0.96207 1.00736 0.99725 1.21307 0.93595 0.96147 0.96036 1.19784 0.94694 1.08713 0.95632 1.18189 0.85985 0.76193 0.84288 1.43630 1.17077 1.67500 1.11722 1.90745 1.73072 1.55995 1.25588 1.19982 0.92534 0.92754 0.95891 1.20998 1.01315 1.02523 0.91911 1.20907 0.94706 1.05195 0.97204 0.86570 0.88098 0.87008 0.89760 0.88227 0.95524 0.98066 0.92393 0.73935 0.85947 0.82701 0.75520 0.75496 0.90397 0.90597 0.90300 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 14.32 67.78 0.97 -2.64 16 2 C -0.19 -4.69 9.85 25.64 0.25 -4.43 16 3 C 0.13 3.87 5.57 85.63 0.48 4.34 16 4 N -0.61 -24.80 2.44 -848.59 -2.07 -26.87 16 5 C 0.28 14.77 5.16 85.63 0.44 15.21 16 6 C -0.54 -30.72 9.39 25.60 0.24 -30.48 16 7 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 8 C 0.01 0.68 5.46 84.66 0.46 1.14 16 9 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 10 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 14 C 0.70 28.57 8.11 179.05 1.45 30.02 16 15 O -0.61 -30.85 13.38 -3.97 -0.05 -30.90 16 16 N -0.67 -20.13 5.15 -317.17 -1.63 -21.76 16 17 C 0.19 5.65 6.28 38.37 0.24 5.89 16 18 C -0.16 -4.83 8.66 22.35 0.19 -4.63 16 19 C -0.05 -1.23 9.51 22.50 0.21 -1.01 16 20 C -0.18 -4.45 5.88 -20.08 -0.12 -4.56 16 21 C 0.57 12.87 7.96 86.71 0.69 13.56 16 22 N -0.83 -11.82 8.82 -175.78 -1.55 -13.37 16 23 O -0.57 -16.16 14.18 -3.99 -0.06 -16.22 16 24 C -0.01 -0.24 5.91 -19.63 -0.12 -0.35 16 25 C -0.11 -2.37 8.71 71.24 0.62 -1.75 16 26 C -0.16 -3.78 9.57 22.35 0.21 -3.57 16 27 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.10 2.22 7.84 -2.91 -0.02 2.19 16 29 H 0.11 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.08 2.62 7.72 -2.39 -0.02 2.60 16 31 H 0.10 2.23 6.44 -2.39 -0.02 2.21 16 32 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 33 H 0.00 0.07 7.42 -2.39 -0.02 0.06 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.42 9.35 6.62 -92.71 -0.61 8.74 16 36 H 0.12 4.41 6.26 -2.91 -0.02 4.39 16 37 H 0.16 2.55 6.45 -2.92 -0.02 2.53 16 38 H 0.41 3.99 6.89 -92.70 -0.64 3.35 16 39 H 0.41 4.44 8.93 -92.71 -0.83 3.61 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.29 8.03 -2.38 -0.02 1.27 16 42 H 0.08 1.96 5.88 -2.39 -0.01 1.94 16 43 H 0.16 2.79 8.05 -2.91 -0.02 2.76 16 Total: -1.00 -77.09 363.43 2.18 -74.91 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: -1.01 Total: 25.81 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.24 Total: 16.74 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.97 Total: -116.73 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.11 Total: -47.12 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -77.09 2.18 -74.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432787503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.620 kcal (2) G-P(sol) polarization free energy of solvation -77.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds