Wall clock time and date at job start Tue Mar 31 2020 11:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99977 * 2 1 4 4 C 1.52999 * 109.47104 * 179.97438 * 3 2 1 5 5 C 1.52997 * 110.88950 * 303.88585 * 4 3 2 6 6 C 1.55157 * 111.00246 * 67.80682 * 4 3 2 7 7 C 1.54327 * 102.94452 * 153.57783 * 6 4 3 8 8 N 1.47027 * 107.26886 * 337.80398 * 7 6 4 9 9 S 1.65595 * 125.64813 * 179.20868 * 8 7 6 10 10 O 1.42102 * 104.27689 * 25.75805 * 9 8 7 11 11 O 1.42099 * 104.27734 * 153.62284 * 9 8 7 12 12 C 1.81401 * 104.44690 * 269.69330 * 9 8 7 13 13 C 1.53001 * 109.47198 * 173.93548 * 12 9 8 14 14 C 1.50706 * 115.55172 * 39.91189 * 13 12 9 15 15 H 1.07999 * 120.00212 * 264.79160 * 14 13 12 16 16 C 1.37877 * 119.99981 * 84.78470 * 14 13 12 17 17 N 1.31515 * 119.99987 * 353.00618 * 16 14 13 18 18 Si 1.86798 * 120.00100 * 173.00172 * 16 14 13 19 19 H 1.48497 * 109.46901 * 90.00410 * 18 16 14 20 20 H 1.48504 * 109.47049 * 210.00128 * 18 16 14 21 21 H 1.48496 * 109.47030 * 330.00243 * 18 16 14 22 22 C 1.53001 * 117.50071 * 254.20685 * 13 12 9 23 23 C 1.53001 * 60.00011 * 252.50827 * 22 13 12 24 24 C 1.47426 * 108.69991 * 358.94588 * 8 7 6 25 25 H 1.08999 * 109.47374 * 300.00271 * 1 2 3 26 26 H 1.09002 * 109.47208 * 59.99619 * 1 2 3 27 27 H 1.08996 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46811 * 60.00330 * 3 2 1 29 29 H 1.08997 * 109.47382 * 300.00105 * 3 2 1 30 30 H 1.09001 * 109.46853 * 296.11435 * 5 4 3 31 31 H 1.08994 * 109.47317 * 56.11527 * 5 4 3 32 32 H 1.09003 * 109.47499 * 176.11996 * 5 4 3 33 33 H 1.08999 * 110.72261 * 271.93557 * 6 4 3 34 34 H 1.08999 * 110.71888 * 35.03351 * 6 4 3 35 35 H 1.09003 * 109.87890 * 218.39536 * 7 6 4 36 36 H 1.08999 * 109.88707 * 97.22294 * 7 6 4 37 37 H 1.08998 * 109.47377 * 293.93134 * 12 9 8 38 38 H 1.08995 * 109.47611 * 53.93327 * 12 9 8 39 39 H 0.96999 * 120.00323 * 185.02959 * 17 16 14 40 40 H 1.09007 * 117.49495 * 359.97438 * 22 13 12 41 41 H 1.09002 * 117.50232 * 145.01156 * 22 13 12 42 42 H 1.09004 * 117.49147 * 252.50830 * 23 22 13 43 43 H 1.08995 * 117.51466 * 107.47765 * 23 22 13 44 44 H 1.09000 * 110.36405 * 142.97137 * 24 8 7 45 45 H 1.09003 * 110.36206 * 265.28261 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0158 0.3474 1.1876 6 6 4.0471 0.5951 -1.3402 7 6 5.4779 1.1640 -1.4444 8 7 5.5323 2.3658 -0.5992 9 16 6.8641 3.3218 -0.3655 10 8 7.6454 3.1267 -1.5363 11 8 6.3275 4.5985 -0.0470 12 6 7.6911 2.6006 1.0790 13 6 9.0276 3.3092 1.3082 14 6 9.0168 4.8013 1.0967 15 1 9.3157 5.2139 0.1444 16 6 8.6253 5.6397 2.1189 17 7 8.1314 5.1367 3.2292 18 14 8.7966 7.4899 1.9269 19 1 7.5538 8.0428 1.3313 20 1 9.0244 8.1067 3.2584 21 1 9.9478 7.7908 1.0385 22 6 10.3026 2.5513 0.9329 23 6 9.9407 2.7578 2.4051 24 6 4.2031 2.5824 0.0007 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.7617 0.8560 2.1176 31 1 3.5316 -0.6288 1.1634 32 1 5.0965 0.2184 1.1277 33 1 4.0672 -0.4940 -1.3000 34 1 3.4315 0.9375 -2.1720 35 1 5.6973 1.4282 -2.4789 36 1 6.1970 0.4268 -1.0873 37 1 7.0592 2.7236 1.9586 38 1 7.8678 1.5393 0.9043 39 1 7.7885 5.7268 3.9185 40 1 10.1892 1.5476 0.5231 41 1 11.1338 3.1318 0.5326 42 1 10.5339 3.4742 2.9734 43 1 9.5890 1.8904 2.9636 44 1 4.3032 2.9551 1.0201 45 1 3.6233 3.2799 -0.6038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451662052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:13 Heat of formation + Delta-G solvation = -94.614375 kcal Electronic energy + Delta-G solvation = -26312.631247 eV Core-core repulsion = 22651.219597 eV Total energy + Delta-G solvation = -3661.411650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.48370 -37.40882 -36.70419 -36.08853 -34.88655 -32.63264 -32.03521 -29.48760 -28.15382 -27.54429 -26.69502 -25.46344 -24.81972 -22.14992 -21.18485 -19.49660 -19.35104 -18.30295 -17.00085 -16.56973 -16.39738 -16.00108 -15.73825 -15.06059 -14.95775 -14.66777 -14.34144 -13.94747 -13.71395 -13.52783 -13.35109 -13.00254 -12.73926 -12.43495 -12.18311 -11.99621 -11.87148 -11.77652 -11.62823 -11.20822 -11.09056 -10.98306 -10.93043 -10.80229 -10.75719 -10.65912 -10.58249 -10.50500 -10.33491 -10.09217 -9.83738 -9.70150 -8.96003 -8.64590 -8.51425 -8.06987 -6.14748 -4.29309 1.15648 3.33680 3.41024 3.43508 3.44032 3.63123 4.41055 4.44541 4.51067 4.71223 4.86245 4.97756 5.05339 5.09269 5.15802 5.18616 5.20176 5.29731 5.34090 5.39866 5.41723 5.46960 5.65928 5.72071 5.78075 5.86015 5.95193 5.98078 6.04071 6.08258 6.14634 6.29311 6.36025 6.36371 6.47584 6.63720 6.70723 6.78544 6.95231 6.98430 7.20279 7.40679 7.79775 8.20230 8.79268 9.47726 10.92850 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.004165 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.760503 B = 6721.771466 C = 7087.341723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.076 3.924 4 C -0.073 4.073 5 C -0.133 4.133 6 C -0.112 4.112 7 C 0.120 3.880 8 N -1.023 6.023 9 S 2.636 3.364 10 O -0.970 6.970 11 O -0.937 6.937 12 C -0.558 4.558 13 C 0.051 3.949 14 C -0.544 4.544 15 H 0.069 0.931 16 C 0.098 3.902 17 N -0.867 5.867 18 Si 0.889 3.111 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.205 4.205 23 C -0.144 4.144 24 C 0.135 3.865 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.265 0.735 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.119 -11.121 -4.304 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.001 4.001 4 C -0.075 4.075 5 C -0.190 4.190 6 C -0.151 4.151 7 C -0.006 4.006 8 N -0.859 5.859 9 S 2.735 3.265 10 O -0.961 6.961 11 O -0.927 6.927 12 C -0.691 4.691 13 C 0.048 3.952 14 C -0.581 4.581 15 H 0.087 0.913 16 C -0.109 4.109 17 N -0.501 5.501 18 Si 0.716 3.284 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.242 4.242 23 C -0.183 4.183 24 C 0.009 3.991 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.742 -10.440 -4.640 17.114 hybrid contribution -0.203 0.665 0.633 0.941 sum -12.946 -9.774 -4.006 16.708 Atomic orbital electron populations 1.22719 0.81308 1.02555 0.99918 1.87868 1.19292 1.27856 1.95400 1.22444 0.92486 0.84616 1.00530 1.21788 0.92657 0.96153 0.96894 1.21684 1.01431 0.99802 0.96130 1.22659 0.95069 1.00965 0.96385 1.21640 0.97420 0.86454 0.95105 1.59241 1.24277 1.42242 1.60171 1.04404 0.72055 0.73721 0.76329 1.93467 1.69969 1.86367 1.46312 1.93529 1.77103 1.36458 1.85650 1.30002 1.11462 1.08169 1.19434 1.18177 0.83377 0.92984 1.00621 1.20594 1.49541 0.88080 0.99896 0.91333 1.24889 0.92697 0.99149 0.94185 1.69953 1.37472 1.35600 1.07063 0.86607 0.79343 0.84922 0.77565 1.19583 1.20968 1.19403 1.23127 1.01814 0.99723 0.99503 1.22526 1.04661 1.00988 0.90108 1.21831 0.83460 0.95004 0.98803 0.94145 0.94216 0.89789 0.92807 0.92896 0.92402 0.91581 0.92120 0.89970 0.90844 0.91298 0.92014 0.85525 0.88710 0.92570 0.91277 0.89689 0.89648 0.91638 0.90226 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.92 9.80 -35.23 -0.35 -4.26 16 3 C 0.08 0.75 4.90 37.16 0.18 0.94 16 4 C -0.07 -0.84 0.75 -152.36 -0.11 -0.95 16 5 C -0.13 -1.51 8.48 37.16 0.31 -1.20 16 6 C -0.11 -1.22 5.81 -24.89 -0.14 -1.37 16 7 C 0.12 1.62 6.50 -3.06 -0.02 1.60 16 8 N -1.02 -16.96 3.61 -111.41 -0.40 -17.36 16 9 S 2.64 57.54 4.83 -107.50 -0.52 57.02 16 10 O -0.97 -23.14 17.60 -57.54 -1.01 -24.15 16 11 O -0.94 -23.73 16.74 -57.54 -0.96 -24.69 16 12 C -0.56 -12.00 6.29 37.16 0.23 -11.77 16 13 C 0.05 1.25 1.64 -155.66 -0.26 1.00 16 14 C -0.54 -15.13 6.89 -34.44 -0.24 -15.36 16 15 H 0.07 1.96 7.82 -52.49 -0.41 1.55 16 16 C 0.10 2.72 5.39 -17.82 -0.10 2.63 16 17 N -0.87 -24.12 12.96 55.43 0.72 -23.41 16 18 Si 0.89 21.93 29.55 -169.99 -5.02 16.91 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.20 -4.51 9.88 -26.73 -0.26 -4.78 16 23 C -0.14 -3.32 9.50 -26.73 -0.25 -3.57 16 24 C 0.14 1.91 5.82 -2.53 -0.01 1.90 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 32 H 0.06 0.72 7.80 -51.93 -0.40 0.32 16 33 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 34 H 0.07 0.74 7.99 -51.93 -0.41 0.32 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.13 2.75 8.14 -51.93 -0.42 2.33 16 38 H 0.09 1.71 7.95 -51.93 -0.41 1.30 16 39 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 40 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 41 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 42 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 45 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -33.03 376.54 -9.34 -42.38 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.91 Total: 1.50 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 0.44 Total: -29.60 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.32 Total: -40.77 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -2.32 Total: -53.11 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 57.54 SS G_CDS: -0.52 Total: 57.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.03 -9.34 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451662052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.238 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds