Wall clock time and date at job start Tue Mar 31 2020 11:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48498 * 109.47212 * 240.00278 * 3 2 1 5 5 H 1.48499 * 109.47180 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46651 * 120.00072 * 3 2 1 7 7 C 1.37874 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99835 * 172.22031 * 7 2 1 9 9 C 1.50695 * 120.00263 * 352.22777 * 7 2 1 10 10 C 1.53003 * 115.55209 * 84.78274 * 9 7 2 11 11 S 1.81400 * 109.46925 * 65.19419 * 10 9 7 12 12 O 1.42103 * 110.54456 * 62.19093 * 11 10 9 13 13 O 1.42093 * 110.54291 * 285.43274 * 11 10 9 14 14 N 1.65606 * 104.44616 * 173.81142 * 11 10 9 15 15 C 1.46505 * 119.99867 * 65.00298 * 14 11 10 16 16 C 1.52991 * 109.47175 * 164.99732 * 15 14 11 17 17 C 1.53005 * 109.47118 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47093 * 179.97438 * 17 16 15 19 19 H 1.09002 * 110.43767 * 305.70291 * 18 17 16 20 20 C 1.54810 * 110.48800 * 183.15748 * 18 17 16 21 21 C 1.55227 * 101.98648 * 220.51867 * 20 18 17 22 22 O 1.44383 * 103.56492 * 36.88235 * 21 20 18 23 23 C 1.43741 * 106.97591 * 320.00569 * 22 21 20 24 24 C 1.53006 * 117.49843 * 230.45162 * 9 7 2 25 25 C 1.52995 * 117.49983 * 299.10858 * 9 7 2 26 26 H 0.97003 * 119.99575 * 5.01835 * 1 2 3 27 27 H 1.08994 * 109.46853 * 305.19059 * 10 9 7 28 28 H 1.09002 * 109.46734 * 185.19203 * 10 9 7 29 29 H 0.96995 * 120.00220 * 245.00155 * 14 11 10 30 30 H 1.08997 * 109.47097 * 44.99654 * 15 14 11 31 31 H 1.08996 * 109.46850 * 284.99781 * 15 14 11 32 32 H 1.09007 * 109.47081 * 60.00070 * 16 15 14 33 33 H 1.09001 * 109.47722 * 299.99769 * 16 15 14 34 34 H 1.08997 * 109.46825 * 60.00124 * 17 16 15 35 35 H 1.08996 * 109.47179 * 300.00216 * 17 16 15 36 36 H 1.08999 * 110.90768 * 338.64402 * 20 18 17 37 37 H 1.09002 * 110.90459 * 102.24542 * 20 18 17 38 38 H 1.08996 * 110.52358 * 278.38145 * 21 20 18 39 39 H 1.08998 * 110.77455 * 155.50074 * 21 20 18 40 40 H 1.08997 * 109.88131 * 267.09167 * 23 22 21 41 41 H 1.08999 * 110.00287 * 146.00860 * 23 22 21 42 42 H 1.08999 * 117.49992 * 215.00277 * 24 9 7 43 43 H 1.09004 * 117.49472 * 0.02562 * 24 9 7 44 44 H 1.08999 * 117.49718 * 359.97438 * 25 9 7 45 45 H 1.09002 * 117.50289 * 144.97493 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0771 -1.1983 -0.1272 9 6 1.2614 -2.4932 0.1754 10 6 0.6667 -3.0914 -1.1012 11 16 2.0068 -3.5623 -2.2294 12 8 2.8265 -4.5625 -1.6402 13 8 2.5774 -2.4101 -2.8343 14 7 1.2433 -4.3418 -3.4752 15 6 0.3172 -3.6074 -4.3408 16 6 0.0440 -4.4245 -5.6050 17 6 -0.9237 -3.6578 -6.5087 18 6 -1.1964 -4.4747 -7.7733 19 1 -0.2601 -4.7400 -8.2644 20 6 -2.1113 -3.6857 -8.7413 21 6 -3.0617 -4.7963 -9.2638 22 8 -3.2697 -5.6355 -8.1075 23 6 -2.0048 -5.7419 -7.4331 24 6 1.7805 -3.4660 1.2361 25 6 0.4828 -2.6910 1.4775 26 1 -0.4850 0.8369 -0.0735 27 1 0.0272 -2.3531 -1.5847 28 1 0.0774 -3.9730 -0.8489 29 1 1.4093 -5.2845 -3.6318 30 1 0.7589 -2.6496 -4.6157 31 1 -0.6189 -3.4366 -3.8092 32 1 -0.3977 -5.3824 -5.3301 33 1 0.9801 -4.5953 -6.1367 34 1 -0.4824 -2.6998 -6.7836 35 1 -1.8597 -3.4874 -5.9769 36 1 -2.6690 -2.9156 -8.2085 37 1 -1.5323 -3.2512 -9.5563 38 1 -2.5862 -5.3597 -10.0665 39 1 -4.0055 -4.3693 -9.6029 40 1 -1.4719 -6.6264 -7.7820 41 1 -2.1605 -5.8040 -6.3561 42 1 1.6984 -4.5321 1.0246 43 1 2.6593 -3.1660 1.8070 44 1 0.5084 -1.8816 2.2071 45 1 -0.4533 -3.2469 1.4247 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452015201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:49 Heat of formation + Delta-G solvation = -114.643035 kcal Electronic energy + Delta-G solvation = -24950.808309 eV Core-core repulsion = 21288.528150 eV Total energy + Delta-G solvation = -3662.280158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.80216 -36.75934 -36.56492 -36.12801 -35.05821 -33.91922 -32.04313 -30.99320 -28.90945 -28.15568 -25.47608 -25.30293 -23.17584 -21.63794 -21.21158 -20.57960 -19.65646 -18.59494 -17.05280 -16.83039 -16.54487 -16.31911 -15.77655 -15.33512 -15.17952 -14.93654 -14.70206 -14.29819 -13.86240 -13.65335 -13.34043 -13.15277 -12.95153 -12.77807 -11.94423 -11.87903 -11.84354 -11.72695 -11.59383 -11.48618 -11.26582 -11.14785 -11.04236 -11.00428 -10.90808 -10.73291 -10.64764 -10.59150 -10.45159 -10.11472 -9.93749 -9.72163 -9.18610 -8.96185 -8.56204 -8.08701 -6.14044 -4.24591 1.09626 3.32501 3.34287 3.41062 3.47333 3.65576 4.19221 4.32774 4.37291 4.55183 4.57019 4.82121 4.83594 4.91512 4.97499 5.03457 5.11814 5.15919 5.22450 5.28871 5.36887 5.40579 5.49647 5.52027 5.60998 5.66008 5.66176 5.77557 5.86733 5.97100 6.01675 6.09430 6.22775 6.29541 6.37792 6.57604 6.61481 6.72413 6.98648 7.22699 7.30376 7.39258 7.80280 8.20597 8.80630 9.46479 10.93581 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.003070 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.373453 B = 9118.867906 C = 9787.448562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.082 3.918 3 Si 0.891 3.109 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.044 3.956 10 C -0.554 4.554 11 S 2.607 3.393 12 O -0.976 6.976 13 O -0.951 6.951 14 N -1.135 6.135 15 C 0.115 3.885 16 C -0.127 4.127 17 C -0.112 4.112 18 C -0.122 4.122 19 H 0.084 0.916 20 C -0.152 4.152 21 C 0.045 3.955 22 O -0.380 6.380 23 C 0.048 3.952 24 C -0.208 4.208 25 C -0.142 4.142 26 H 0.263 0.737 27 H 0.133 0.867 28 H 0.099 0.901 29 H 0.408 0.592 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -9.229 -15.376 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.041 3.959 10 C -0.687 4.687 11 S 2.705 3.295 12 O -0.966 6.966 13 O -0.941 6.941 14 N -0.891 5.891 15 C -0.012 4.012 16 C -0.166 4.166 17 C -0.151 4.151 18 C -0.141 4.141 19 H 0.102 0.898 20 C -0.190 4.190 21 C -0.032 4.032 22 O -0.299 6.299 23 C -0.029 4.029 24 C -0.246 4.246 25 C -0.181 4.181 26 H 0.073 0.927 27 H 0.151 0.849 28 H 0.117 0.883 29 H 0.240 0.760 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.268 -8.851 -15.194 18.356 hybrid contribution -0.139 0.589 -0.029 0.606 sum -5.407 -8.263 -15.223 18.145 Atomic orbital electron populations 1.69972 1.06029 1.27276 1.47747 1.24948 0.94809 0.99203 0.93308 0.86653 0.79919 0.82406 0.79267 1.19453 1.21118 1.19903 1.20494 0.93688 0.88634 1.52593 0.91401 1.18267 0.98969 0.94300 0.84320 1.29973 1.16549 1.08458 1.13713 1.05105 0.76439 0.73726 0.74270 1.93502 1.65590 1.59459 1.78070 1.93530 1.74959 1.51023 1.74561 1.55974 1.62504 1.22407 1.48237 1.21261 0.93002 0.95898 0.91039 1.21832 1.00032 0.99212 0.95530 1.21620 1.00045 0.98894 0.94503 1.22588 0.99314 0.95505 0.96707 0.89786 1.23263 0.97830 0.98638 0.99274 1.23586 0.99886 0.90736 0.88957 1.88878 1.30661 1.70601 1.39781 1.23338 0.84450 0.96808 0.98313 1.23198 0.98662 0.96044 1.06658 1.22552 0.92563 1.01035 1.01928 0.92686 0.84897 0.88281 0.75966 0.90127 0.91839 0.91277 0.91057 0.90854 0.90937 0.90072 0.90154 0.92385 0.89076 0.92535 0.89359 0.90680 0.89541 0.89601 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.90 12.98 55.43 0.72 -23.18 16 2 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 3 Si 0.89 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.13 8.18 -34.44 -0.28 -14.41 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 C 0.04 1.06 1.32 -155.66 -0.21 0.86 16 10 C -0.55 -11.49 5.93 37.16 0.22 -11.27 16 11 S 2.61 52.08 5.19 -107.50 -0.56 51.52 16 12 O -0.98 -21.32 18.08 -57.54 -1.04 -22.36 16 13 O -0.95 -22.54 17.16 -57.54 -0.99 -23.53 16 14 N -1.13 -16.33 5.89 -10.62 -0.06 -16.39 16 15 C 0.11 1.44 6.13 -4.04 -0.02 1.41 16 16 C -0.13 -1.17 5.20 -26.73 -0.14 -1.31 16 17 C -0.11 -0.94 4.41 -26.73 -0.12 -1.05 16 18 C -0.12 -0.92 3.06 -89.09 -0.27 -1.19 16 19 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 20 C -0.15 -1.05 6.73 -24.60 -0.17 -1.22 16 21 C 0.04 0.33 7.72 38.34 0.30 0.63 16 22 O -0.38 -3.95 11.52 -35.23 -0.41 -4.35 16 23 C 0.05 0.40 6.94 37.74 0.26 0.66 16 24 C -0.21 -4.59 9.96 -26.69 -0.27 -4.85 16 25 C -0.14 -3.23 9.49 -26.70 -0.25 -3.48 16 26 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 27 H 0.13 2.85 8.14 -51.93 -0.42 2.42 16 28 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 29 H 0.41 4.86 8.62 -34.48 -0.30 4.56 16 30 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.56 6.99 -51.93 -0.36 0.20 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.58 7.87 -51.93 -0.41 0.18 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.73 6.82 -51.93 -0.35 0.38 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 44 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -33.27 378.35 -10.41 -43.67 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.71 Total: 5.75 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: -1.04 Total: -33.09 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.66 Total: -39.57 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -2.43 Total: -50.25 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 52.08 SS G_CDS: -0.56 Total: 51.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.27 -10.41 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452015201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.970 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds