Wall clock time and date at job start Tue Mar 31 2020 11:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48498 * 109.47212 * 240.00278 * 3 2 1 5 5 H 1.48499 * 109.47180 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46651 * 120.00072 * 3 2 1 7 7 C 1.37874 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99835 * 172.22031 * 7 2 1 9 9 C 1.50695 * 120.00263 * 352.22777 * 7 2 1 10 10 C 1.53003 * 115.55209 * 84.78274 * 9 7 2 11 11 S 1.81400 * 109.46925 * 65.19419 * 10 9 7 12 12 O 1.42103 * 110.54456 * 62.19093 * 11 10 9 13 13 O 1.42093 * 110.54291 * 285.43274 * 11 10 9 14 14 N 1.65606 * 104.44616 * 173.81142 * 11 10 9 15 15 C 1.46505 * 119.99867 * 65.00298 * 14 11 10 16 16 C 1.52991 * 109.47175 * 164.99732 * 15 14 11 17 17 C 1.53005 * 109.47118 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47093 * 179.97438 * 17 16 15 19 19 H 1.09002 * 110.43767 * 305.70291 * 18 17 16 20 20 C 1.54810 * 110.48800 * 183.15748 * 18 17 16 21 21 C 1.55227 * 101.98648 * 220.51867 * 20 18 17 22 22 O 1.44383 * 103.56492 * 36.88235 * 21 20 18 23 23 C 1.43741 * 106.97591 * 320.00569 * 22 21 20 24 24 C 1.53006 * 117.49843 * 230.45162 * 9 7 2 25 25 C 1.52995 * 117.49983 * 299.10858 * 9 7 2 26 26 H 0.97003 * 119.99575 * 5.01835 * 1 2 3 27 27 H 1.08994 * 109.46853 * 305.19059 * 10 9 7 28 28 H 1.09002 * 109.46734 * 185.19203 * 10 9 7 29 29 H 0.96995 * 120.00220 * 245.00155 * 14 11 10 30 30 H 1.08997 * 109.47097 * 44.99654 * 15 14 11 31 31 H 1.08996 * 109.46850 * 284.99781 * 15 14 11 32 32 H 1.09007 * 109.47081 * 60.00070 * 16 15 14 33 33 H 1.09001 * 109.47722 * 299.99769 * 16 15 14 34 34 H 1.08997 * 109.46825 * 60.00124 * 17 16 15 35 35 H 1.08996 * 109.47179 * 300.00216 * 17 16 15 36 36 H 1.08999 * 110.90768 * 338.64402 * 20 18 17 37 37 H 1.09002 * 110.90459 * 102.24542 * 20 18 17 38 38 H 1.08996 * 110.52358 * 278.38145 * 21 20 18 39 39 H 1.08998 * 110.77455 * 155.50074 * 21 20 18 40 40 H 1.08997 * 109.88131 * 267.09167 * 23 22 21 41 41 H 1.08999 * 110.00287 * 146.00860 * 23 22 21 42 42 H 1.08999 * 117.49992 * 215.00277 * 24 9 7 43 43 H 1.09004 * 117.49472 * 0.02562 * 24 9 7 44 44 H 1.08999 * 117.49718 * 359.97438 * 25 9 7 45 45 H 1.09002 * 117.50289 * 144.97493 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0771 -1.1983 -0.1272 9 6 1.2614 -2.4932 0.1754 10 6 0.6667 -3.0914 -1.1012 11 16 2.0068 -3.5623 -2.2294 12 8 2.8265 -4.5625 -1.6402 13 8 2.5774 -2.4101 -2.8343 14 7 1.2433 -4.3418 -3.4752 15 6 0.3172 -3.6074 -4.3408 16 6 0.0440 -4.4245 -5.6050 17 6 -0.9237 -3.6578 -6.5087 18 6 -1.1964 -4.4747 -7.7733 19 1 -0.2601 -4.7400 -8.2644 20 6 -2.1113 -3.6857 -8.7413 21 6 -3.0617 -4.7963 -9.2638 22 8 -3.2697 -5.6355 -8.1075 23 6 -2.0048 -5.7419 -7.4331 24 6 1.7805 -3.4660 1.2361 25 6 0.4828 -2.6910 1.4775 26 1 -0.4850 0.8369 -0.0735 27 1 0.0272 -2.3531 -1.5847 28 1 0.0774 -3.9730 -0.8489 29 1 1.4093 -5.2845 -3.6318 30 1 0.7589 -2.6496 -4.6157 31 1 -0.6189 -3.4366 -3.8092 32 1 -0.3977 -5.3824 -5.3301 33 1 0.9801 -4.5953 -6.1367 34 1 -0.4824 -2.6998 -6.7836 35 1 -1.8597 -3.4874 -5.9769 36 1 -2.6690 -2.9156 -8.2085 37 1 -1.5323 -3.2512 -9.5563 38 1 -2.5862 -5.3597 -10.0665 39 1 -4.0055 -4.3693 -9.6029 40 1 -1.4719 -6.6264 -7.7820 41 1 -2.1605 -5.8040 -6.3561 42 1 1.6984 -4.5321 1.0246 43 1 2.6593 -3.1660 1.8070 44 1 0.5084 -1.8816 2.2071 45 1 -0.4533 -3.2469 1.4247 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452015201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:48 Heat of formation + Delta-G solvation = -137.853442 kcal Electronic energy + Delta-G solvation = -24951.814787 eV Core-core repulsion = 21288.528150 eV Total energy + Delta-G solvation = -3663.286637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42160 -38.56033 -37.98006 -37.36589 -36.75351 -34.79122 -34.08128 -31.71292 -29.84241 -29.61441 -27.48508 -26.14510 -23.86115 -22.98985 -22.39693 -21.53157 -21.13894 -20.14339 -18.39422 -18.31876 -17.59285 -17.34573 -16.85487 -16.78920 -16.64868 -16.01846 -15.90762 -15.75928 -15.42297 -14.90309 -14.50092 -14.07880 -13.83865 -13.73544 -13.65728 -13.44795 -13.12295 -12.99478 -12.89616 -12.86167 -12.84426 -12.47753 -12.43335 -12.35478 -12.21389 -12.15177 -11.90483 -11.62571 -11.57536 -11.44014 -11.37366 -10.87578 -10.56830 -10.54703 -10.44608 -9.85329 -8.19004 -6.33695 -0.48343 1.39812 1.41231 1.48592 2.07284 2.40098 2.95610 3.08135 3.08308 3.38895 3.46233 3.61568 3.71198 3.93362 3.98986 4.10109 4.19844 4.26630 4.32806 4.33774 4.46845 4.50701 4.56892 4.61121 4.67169 4.77013 4.80628 4.85181 4.89002 4.95687 4.98101 4.99235 5.07704 5.11615 5.21761 5.23014 5.37372 5.44981 5.47879 5.59067 5.71908 5.98768 6.21906 6.23734 6.72132 7.38488 8.87775 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.003070 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.373453 B = 9118.867906 C = 9787.448562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.044 3.956 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.011 3.989 10 C -0.552 4.552 11 S 2.625 3.375 12 O -0.997 6.997 13 O -0.995 6.995 14 N -1.115 6.115 15 C 0.104 3.896 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.118 4.118 19 H 0.094 0.906 20 C -0.151 4.151 21 C 0.040 3.960 22 O -0.409 6.409 23 C 0.043 3.957 24 C -0.197 4.197 25 C -0.139 4.139 26 H 0.266 0.734 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.423 0.577 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -10.269 -16.377 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.160 4.160 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.066 0.934 9 C 0.009 3.991 10 C -0.685 4.685 11 S 2.722 3.278 12 O -0.987 6.987 13 O -0.985 6.985 14 N -0.876 5.876 15 C -0.022 4.022 16 C -0.158 4.158 17 C -0.148 4.148 18 C -0.137 4.137 19 H 0.113 0.887 20 C -0.189 4.189 21 C -0.036 4.036 22 O -0.328 6.328 23 C -0.033 4.033 24 C -0.234 4.234 25 C -0.178 4.178 26 H 0.075 0.925 27 H 0.141 0.859 28 H 0.152 0.848 29 H 0.259 0.741 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.913 -9.900 -16.182 19.871 hybrid contribution 0.044 0.870 0.251 0.906 sum -5.869 -9.030 -15.932 19.230 Atomic orbital electron populations 1.70016 1.06576 1.27863 1.48240 1.25511 0.95633 1.01516 0.93300 0.85969 0.79157 0.79955 0.78928 1.20187 1.19797 1.19426 1.20689 0.93168 0.90725 1.52882 0.93368 1.18402 1.00238 0.94242 0.86192 1.29869 1.16835 1.09456 1.12352 1.04277 0.76188 0.72882 0.74492 1.93462 1.66672 1.59605 1.78961 1.93477 1.76264 1.53211 1.75515 1.55427 1.62380 1.23085 1.46757 1.21525 0.92619 0.95717 0.92353 1.21800 1.00704 0.99396 0.93923 1.21588 0.99571 0.98899 0.94769 1.22557 0.99752 0.95039 0.96329 0.88729 1.23268 0.97728 0.98324 0.99543 1.23756 1.00636 0.90734 0.88511 1.88844 1.31841 1.71274 1.40880 1.23437 0.84108 0.97547 0.98249 1.23247 0.98101 0.96971 1.05108 1.22511 0.93852 1.00838 1.00625 0.92511 0.85856 0.84822 0.74096 0.91824 0.90777 0.89608 0.90511 0.91041 0.91259 0.90617 0.88700 0.91294 0.88317 0.91696 0.89487 0.88250 0.90013 0.91616 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.69 12.98 21.45 0.28 -48.42 16 2 C 0.04 2.38 5.38 84.65 0.46 2.83 16 3 Si 0.93 43.82 29.55 68.60 2.03 45.85 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.54 -29.76 8.18 25.60 0.21 -29.55 16 8 H 0.05 2.77 7.83 -2.91 -0.02 2.75 16 9 C 0.01 0.55 1.32 -52.93 -0.07 0.48 16 10 C -0.55 -22.30 5.93 71.98 0.43 -21.87 16 11 S 2.62 103.07 5.19 -56.49 -0.29 102.77 16 12 O -1.00 -42.52 18.08 -127.65 -2.31 -44.83 16 13 O -0.99 -47.76 17.16 -127.65 -2.19 -49.95 16 14 N -1.11 -30.17 5.89 -187.50 -1.10 -31.27 16 15 C 0.10 2.45 6.13 86.38 0.53 2.98 16 16 C -0.12 -1.93 5.20 30.59 0.16 -1.78 16 17 C -0.11 -1.64 4.41 30.60 0.13 -1.50 16 18 C -0.12 -1.52 3.06 -9.80 -0.03 -1.55 16 19 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 20 C -0.15 -1.81 6.73 31.98 0.22 -1.60 16 21 C 0.04 0.53 7.72 72.75 0.56 1.09 16 22 O -0.41 -7.95 11.52 -148.98 -1.72 -9.67 16 23 C 0.04 0.65 6.94 72.36 0.50 1.15 16 24 C -0.20 -8.44 9.96 30.62 0.30 -8.14 16 25 C -0.14 -6.21 9.49 30.62 0.29 -5.92 16 26 H 0.27 13.82 8.32 -92.71 -0.77 13.05 16 27 H 0.12 5.22 8.14 -2.39 -0.02 5.20 16 28 H 0.13 4.33 8.09 -2.39 -0.02 4.31 16 29 H 0.42 9.03 8.62 -96.75 -0.83 8.20 16 30 H 0.06 1.74 7.69 -2.39 -0.02 1.72 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.13 6.99 -2.38 -0.02 1.11 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 0.99 7.87 -2.39 -0.02 0.97 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 1.28 6.82 -2.39 -0.02 1.27 16 42 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 43 H 0.08 3.52 8.14 -2.38 -0.02 3.50 16 44 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -71.11 378.35 -1.48 -72.60 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.13 Total: 26.29 kcal Atomic # 6 Polarization: -67.06 SS G_CDS: 3.69 Total: -63.37 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -0.83 Total: -79.68 kcal Atomic # 8 Polarization: -98.24 SS G_CDS: -6.22 Total: -104.45 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 103.07 SS G_CDS: -0.29 Total: 102.77 kcal Total: -71.11 -1.48 -72.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452015201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.256 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds