Wall clock time and date at job start Tue Mar 31 2020 11:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 119.88746 * 2 1 4 4 C 1.38941 * 120.22238 * 180.27601 * 3 2 1 5 5 N 1.39975 * 120.00183 * 179.76780 * 4 3 2 6 6 C 1.34785 * 119.99669 * 324.33674 * 5 4 3 7 7 O 1.21585 * 119.99836 * 4.76359 * 6 5 4 8 8 N 1.34780 * 119.99906 * 184.75938 * 6 5 4 9 9 C 1.46492 * 119.99968 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46992 * 184.76239 * 9 8 6 11 11 C 1.50695 * 115.55389 * 304.01784 * 10 9 8 12 12 H 1.08000 * 119.99404 * 95.19512 * 11 10 9 13 13 C 1.37877 * 120.00263 * 274.92515 * 11 10 9 14 14 N 1.31513 * 119.99661 * 355.50775 * 13 11 10 15 15 Si 1.86796 * 120.00114 * 175.51000 * 13 11 10 16 16 H 1.48504 * 109.46862 * 89.99549 * 15 13 11 17 17 H 1.48491 * 109.47269 * 209.99726 * 15 13 11 18 18 H 1.48502 * 109.47331 * 329.99984 * 15 13 11 19 19 C 1.53002 * 117.49519 * 89.69091 * 10 9 8 20 20 C 1.53002 * 117.49641 * 158.34718 * 10 9 8 21 21 C 1.38637 * 120.00303 * 359.49815 * 4 3 2 22 22 C 1.39462 * 119.77654 * 0.24694 * 21 4 3 23 23 C 1.47857 * 120.10757 * 179.97438 * 22 21 4 24 24 N 1.34776 * 120.00280 * 359.97438 * 23 22 21 25 25 O 1.21553 * 119.99952 * 180.02562 * 23 22 21 26 26 C 1.37976 * 119.89008 * 179.77430 * 2 1 3 27 27 H 1.09000 * 109.47134 * 270.22510 * 1 2 3 28 28 H 1.08996 * 109.47197 * 30.22866 * 1 2 3 29 29 H 1.09001 * 109.47007 * 150.22846 * 1 2 3 30 30 H 1.07997 * 119.89095 * 0.05017 * 3 2 1 31 31 H 0.97001 * 120.00674 * 144.33206 * 5 4 3 32 32 H 0.97005 * 119.99674 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.47000 * 64.76704 * 9 8 6 34 34 H 1.08997 * 109.47762 * 304.76827 * 9 8 6 35 35 H 0.97008 * 119.99529 * 185.00770 * 14 13 11 36 36 H 1.08998 * 117.49558 * 215.00146 * 19 10 9 37 37 H 1.08999 * 117.49923 * 0.02562 * 19 10 9 38 38 H 1.09000 * 117.49997 * 359.97438 * 20 10 9 39 39 H 1.09003 * 117.49711 * 144.97379 * 20 10 9 40 40 H 1.07999 * 120.10622 * 180.22786 * 21 4 3 41 41 H 0.96999 * 119.99781 * 0.02562 * 24 23 22 42 42 H 0.96994 * 120.00134 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00215 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1987 0.0000 4 6 3.5853 1.2068 -0.0058 5 7 4.2781 2.4231 -0.0107 6 6 3.7847 3.4769 -0.6909 7 8 2.6968 3.3983 -1.2280 8 7 4.4973 4.6177 -0.7757 9 6 3.9614 5.7629 -1.5155 10 6 5.0084 6.8777 -1.5582 11 6 5.5187 7.3419 -0.2185 12 1 6.4299 6.9262 0.1858 13 6 4.8255 8.3014 0.4886 14 7 3.7688 8.8751 -0.0439 15 14 5.3874 8.7862 2.2028 16 1 6.3536 9.9100 2.1076 17 1 4.2133 9.2096 3.0073 18 1 6.0422 7.6245 2.8562 19 6 5.9947 6.8760 -2.7279 20 6 4.8810 7.9244 -2.6669 21 6 4.2856 0.0103 -0.0011 22 6 3.5907 -1.1989 0.0043 23 6 4.3302 -2.4792 0.0088 24 7 5.6780 -2.4791 0.0072 25 8 3.7226 -3.5320 0.0129 26 6 2.1946 -1.1962 0.0047 27 1 -0.3633 0.0040 1.0277 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3633 -0.8920 -0.5103 30 1 1.6523 2.1319 0.0008 31 1 5.1132 2.5076 0.4755 32 1 5.3655 4.6802 -0.3474 33 1 3.0623 6.1278 -1.0188 34 1 3.7156 5.4560 -2.5321 35 1 3.3242 9.6005 0.4222 36 1 7.0127 7.2106 -2.5283 37 1 5.8973 6.0809 -3.4672 38 1 4.0515 7.8185 -3.3661 39 1 5.1659 8.9488 -2.4271 40 1 5.3656 0.0147 -0.0018 41 1 6.1628 -1.6390 0.0035 42 1 6.1630 -3.3190 0.0105 43 1 1.6528 -2.1305 0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455836321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:42 Heat of formation + Delta-G solvation = -22.736510 kcal Electronic energy + Delta-G solvation = -25622.900074 eV Core-core repulsion = 21861.454081 eV Total energy + Delta-G solvation = -3761.445993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68697 -39.70788 -38.26627 -36.83098 -34.83949 -34.15274 -33.50257 -32.26573 -32.05040 -29.78440 -27.09621 -26.29682 -25.25236 -24.35638 -21.97299 -21.19585 -20.86266 -20.13797 -19.49207 -18.27226 -17.99478 -16.88894 -16.62330 -16.16329 -15.83940 -15.36180 -14.95548 -14.85384 -14.70695 -14.43895 -14.20968 -14.06452 -13.67647 -13.28657 -13.14740 -12.79299 -12.44016 -12.25589 -11.93826 -11.77474 -11.68334 -11.58232 -11.07817 -11.03022 -10.60957 -10.41737 -10.30390 -10.18222 -9.99385 -9.81656 -9.54359 -9.12946 -8.84701 -8.61315 -8.47280 -8.25367 -7.97771 -6.15915 -4.26746 0.75630 1.20696 2.68620 2.87099 3.18729 3.26393 3.27331 3.27752 3.45182 3.81247 4.26538 4.50004 4.57888 4.63096 4.97881 5.11763 5.16347 5.18570 5.28911 5.32677 5.51404 5.57114 5.74589 5.93674 5.94107 6.08868 6.20661 6.25777 6.37282 6.41162 6.46406 6.48884 6.53932 6.64286 6.74014 6.95709 7.04988 7.05658 7.11530 7.22728 7.31892 7.49371 7.72039 7.98826 8.24658 8.38536 8.74810 8.90666 9.41181 10.91015 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002790 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.864312 B =10031.970948 C =10178.457013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C -0.091 4.091 4 C 0.175 3.825 5 N -0.694 5.694 6 C 0.696 3.304 7 O -0.586 6.586 8 N -0.709 5.709 9 C 0.180 3.820 10 C 0.023 3.977 11 C -0.503 4.503 12 H 0.060 0.940 13 C 0.075 3.925 14 N -0.872 5.872 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.211 4.211 20 C -0.141 4.141 21 C -0.127 4.127 22 C -0.123 4.123 23 C 0.569 3.431 24 N -0.852 5.852 25 O -0.543 6.543 26 C -0.081 4.081 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.407 0.593 32 H 0.401 0.599 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.402 0.598 42 H 0.404 0.596 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.228 -16.308 1.216 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.112 4.112 4 C 0.079 3.921 5 N -0.341 5.341 6 C 0.396 3.604 7 O -0.464 6.464 8 N -0.361 5.361 9 C 0.057 3.943 10 C 0.023 3.977 11 C -0.541 4.541 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.508 5.508 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.248 4.248 20 C -0.180 4.180 21 C -0.148 4.148 22 C -0.126 4.126 23 C 0.355 3.645 24 N -0.416 5.416 25 O -0.421 6.421 26 C -0.101 4.101 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.242 0.758 32 H 0.235 0.765 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.144 0.856 41 H 0.231 0.769 42 H 0.234 0.766 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.527 -16.704 0.742 16.729 hybrid contribution 1.736 0.728 1.336 2.308 sum 2.263 -15.976 2.078 16.268 Atomic orbital electron populations 1.20802 0.90460 1.03237 1.02566 1.19800 0.96603 0.92091 0.99212 1.21554 0.92851 0.99316 0.97486 1.17324 0.91313 0.84265 0.99158 1.42698 1.27408 1.09740 1.54299 1.16040 0.84438 0.80319 0.79589 1.90878 1.20679 1.82611 1.52267 1.45186 1.22419 1.11831 1.56679 1.20890 0.97311 0.83167 0.92945 1.19032 0.94307 0.94235 0.90166 1.20311 1.08931 1.23743 1.01105 0.92221 1.24990 0.94366 0.95910 0.97707 1.69986 1.19332 1.22998 1.38445 0.86628 0.78183 0.78860 0.84531 1.20669 1.21158 1.19836 1.23052 0.95748 1.02522 1.03519 1.22465 0.97979 0.95842 1.01678 1.20909 0.99298 0.90585 1.04043 1.19482 0.94270 0.91762 1.07128 1.18274 0.82286 0.88903 0.75019 1.43762 1.07076 1.12630 1.78123 1.90803 1.68373 1.32964 1.49962 1.21051 0.92426 0.98286 0.98347 0.90946 0.90916 0.91319 0.83325 0.75802 0.76462 0.91542 0.94105 0.92789 0.90409 0.91700 0.91752 0.89475 0.85552 0.76875 0.76551 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.00 36.01 0.36 -0.77 16 2 C -0.08 -0.94 5.87 -104.71 -0.61 -1.55 16 3 C -0.09 -1.29 8.34 -39.32 -0.33 -1.62 16 4 C 0.18 2.29 6.28 -83.73 -0.53 1.76 16 5 N -0.69 -9.10 5.34 -14.25 -0.08 -9.18 16 6 C 0.70 12.17 8.41 -86.91 -0.73 11.44 16 7 O -0.59 -12.17 13.80 5.29 0.07 -12.10 16 8 N -0.71 -12.77 5.42 -65.23 -0.35 -13.12 16 9 C 0.18 3.84 5.56 -4.04 -0.02 3.82 16 10 C 0.02 0.52 1.60 -155.66 -0.25 0.27 16 11 C -0.50 -12.20 8.15 -34.44 -0.28 -12.48 16 12 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 13 C 0.07 1.89 5.43 -17.82 -0.10 1.80 16 14 N -0.87 -23.25 12.65 55.43 0.70 -22.55 16 15 Si 0.89 19.66 29.54 -169.99 -5.02 14.63 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 C -0.21 -4.21 9.93 -26.69 -0.27 -4.47 16 20 C -0.14 -3.11 9.17 -26.69 -0.24 -3.36 16 21 C -0.13 -1.32 9.46 -38.98 -0.37 -1.69 16 22 C -0.12 -1.41 5.87 -104.99 -0.62 -2.03 16 23 C 0.57 6.43 8.05 -12.32 -0.10 6.34 16 24 N -0.85 -5.95 8.82 30.53 0.27 -5.68 16 25 O -0.54 -8.07 17.18 5.32 0.09 -7.98 16 26 C -0.08 -0.98 9.24 -39.16 -0.36 -1.34 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.15 2.41 6.25 -52.49 -0.33 2.08 16 31 H 0.41 3.99 8.84 -40.82 -0.36 3.63 16 32 H 0.40 6.54 8.02 -40.82 -0.33 6.21 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.04 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 40 H 0.13 0.88 6.40 -52.49 -0.34 0.55 16 41 H 0.40 1.83 6.86 -40.82 -0.28 1.55 16 42 H 0.40 2.22 8.93 -40.82 -0.36 1.86 16 43 H 0.13 1.54 7.65 -52.49 -0.40 1.14 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -31.49 367.63 -8.96 -40.45 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -5.74 Total: 13.88 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -4.44 Total: -3.90 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.54 Total: -50.53 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.16 Total: -20.07 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.49 -8.96 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455836321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.713 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds