Wall clock time and date at job start Tue Mar 31 2020 11:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 119.88746 * 2 1 4 4 C 1.38941 * 120.22238 * 180.27601 * 3 2 1 5 5 N 1.39975 * 120.00183 * 179.76780 * 4 3 2 6 6 C 1.34785 * 119.99669 * 324.33674 * 5 4 3 7 7 O 1.21585 * 119.99836 * 4.76359 * 6 5 4 8 8 N 1.34780 * 119.99906 * 184.75938 * 6 5 4 9 9 C 1.46492 * 119.99968 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46992 * 184.76239 * 9 8 6 11 11 C 1.50695 * 115.55389 * 304.01784 * 10 9 8 12 12 H 1.08000 * 119.99404 * 95.19512 * 11 10 9 13 13 C 1.37877 * 120.00263 * 274.92515 * 11 10 9 14 14 N 1.31513 * 119.99661 * 355.50775 * 13 11 10 15 15 Si 1.86796 * 120.00114 * 175.51000 * 13 11 10 16 16 H 1.48504 * 109.46862 * 89.99549 * 15 13 11 17 17 H 1.48491 * 109.47269 * 209.99726 * 15 13 11 18 18 H 1.48502 * 109.47331 * 329.99984 * 15 13 11 19 19 C 1.53002 * 117.49519 * 89.69091 * 10 9 8 20 20 C 1.53002 * 117.49641 * 158.34718 * 10 9 8 21 21 C 1.38637 * 120.00303 * 359.49815 * 4 3 2 22 22 C 1.39462 * 119.77654 * 0.24694 * 21 4 3 23 23 C 1.47857 * 120.10757 * 179.97438 * 22 21 4 24 24 N 1.34776 * 120.00280 * 359.97438 * 23 22 21 25 25 O 1.21553 * 119.99952 * 180.02562 * 23 22 21 26 26 C 1.37976 * 119.89008 * 179.77430 * 2 1 3 27 27 H 1.09000 * 109.47134 * 270.22510 * 1 2 3 28 28 H 1.08996 * 109.47197 * 30.22866 * 1 2 3 29 29 H 1.09001 * 109.47007 * 150.22846 * 1 2 3 30 30 H 1.07997 * 119.89095 * 0.05017 * 3 2 1 31 31 H 0.97001 * 120.00674 * 144.33206 * 5 4 3 32 32 H 0.97005 * 119.99674 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.47000 * 64.76704 * 9 8 6 34 34 H 1.08997 * 109.47762 * 304.76827 * 9 8 6 35 35 H 0.97008 * 119.99529 * 185.00770 * 14 13 11 36 36 H 1.08998 * 117.49558 * 215.00146 * 19 10 9 37 37 H 1.08999 * 117.49923 * 0.02562 * 19 10 9 38 38 H 1.09000 * 117.49997 * 359.97438 * 20 10 9 39 39 H 1.09003 * 117.49711 * 144.97379 * 20 10 9 40 40 H 1.07999 * 120.10622 * 180.22786 * 21 4 3 41 41 H 0.96999 * 119.99781 * 0.02562 * 24 23 22 42 42 H 0.96994 * 120.00134 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00215 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1987 0.0000 4 6 3.5853 1.2068 -0.0058 5 7 4.2781 2.4231 -0.0107 6 6 3.7847 3.4769 -0.6909 7 8 2.6968 3.3983 -1.2280 8 7 4.4973 4.6177 -0.7757 9 6 3.9614 5.7629 -1.5155 10 6 5.0084 6.8777 -1.5582 11 6 5.5187 7.3419 -0.2185 12 1 6.4299 6.9262 0.1858 13 6 4.8255 8.3014 0.4886 14 7 3.7688 8.8751 -0.0439 15 14 5.3874 8.7862 2.2028 16 1 6.3536 9.9100 2.1076 17 1 4.2133 9.2096 3.0073 18 1 6.0422 7.6245 2.8562 19 6 5.9947 6.8760 -2.7279 20 6 4.8810 7.9244 -2.6669 21 6 4.2856 0.0103 -0.0011 22 6 3.5907 -1.1989 0.0043 23 6 4.3302 -2.4792 0.0088 24 7 5.6780 -2.4791 0.0072 25 8 3.7226 -3.5320 0.0129 26 6 2.1946 -1.1962 0.0047 27 1 -0.3633 0.0040 1.0277 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3633 -0.8920 -0.5103 30 1 1.6523 2.1319 0.0008 31 1 5.1132 2.5076 0.4755 32 1 5.3655 4.6802 -0.3474 33 1 3.0623 6.1278 -1.0188 34 1 3.7156 5.4560 -2.5321 35 1 3.3242 9.6005 0.4222 36 1 7.0127 7.2106 -2.5283 37 1 5.8973 6.0809 -3.4672 38 1 4.0515 7.8185 -3.3661 39 1 5.1659 8.9488 -2.4271 40 1 5.3656 0.0147 -0.0018 41 1 6.1628 -1.6390 0.0035 42 1 6.1630 -3.3190 0.0105 43 1 1.6528 -2.1305 0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455836321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:41 Heat of formation + Delta-G solvation = -45.091684 kcal Electronic energy + Delta-G solvation = -25623.869467 eV Core-core repulsion = 21861.454081 eV Total energy + Delta-G solvation = -3762.415386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79734 -40.80317 -39.36801 -38.45438 -36.00154 -35.03512 -35.00018 -33.94839 -33.12631 -30.87120 -28.10932 -27.85936 -26.99961 -25.30445 -23.15811 -22.80688 -21.95548 -21.37730 -21.02896 -19.36621 -19.12141 -18.11563 -17.73899 -17.34084 -17.08428 -16.66008 -16.45539 -16.05173 -15.86998 -15.79553 -15.59753 -15.17516 -14.79695 -14.58644 -14.41541 -14.08118 -13.84046 -13.47590 -13.30266 -13.03948 -12.91395 -12.80760 -12.74514 -12.48696 -12.34640 -11.99473 -11.46379 -11.43134 -11.29592 -11.04441 -10.92675 -10.72562 -10.42963 -10.11497 -9.86611 -9.77886 -9.11795 -8.07646 -6.22187 -0.18918 0.24615 1.43985 1.47360 1.54332 1.60256 1.77518 2.15393 2.43636 2.51442 2.83130 3.18928 3.24797 3.58172 3.76296 3.77955 4.12194 4.22857 4.27299 4.28928 4.34376 4.56280 4.67184 4.68526 4.74101 4.79500 4.80358 5.01028 5.04615 5.11568 5.14580 5.26071 5.31177 5.38515 5.52133 5.56304 5.63607 5.72350 5.79741 5.85637 5.94793 6.05464 6.38335 6.39062 6.85964 7.10382 7.26569 7.48068 7.54769 8.99071 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002790 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.864312 B =10031.970948 C =10178.457013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.114 4.114 4 C 0.156 3.844 5 N -0.673 5.673 6 C 0.696 3.304 7 O -0.622 6.622 8 N -0.705 5.705 9 C 0.198 3.802 10 C 0.005 3.995 11 C -0.503 4.503 12 H 0.068 0.932 13 C 0.026 3.974 14 N -0.907 5.907 15 Si 0.948 3.052 16 H -0.280 1.280 17 H -0.296 1.296 18 H -0.259 1.259 19 C -0.178 4.178 20 C -0.156 4.156 21 C -0.105 4.105 22 C -0.126 4.126 23 C 0.568 3.432 24 N -0.827 5.827 25 O -0.584 6.584 26 C -0.087 4.087 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.425 0.575 32 H 0.411 0.589 33 H 0.026 0.974 34 H 0.040 0.960 35 H 0.258 0.742 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.168 0.832 41 H 0.416 0.584 42 H 0.414 0.586 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 -18.147 1.737 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.135 4.135 4 C 0.061 3.939 5 N -0.323 5.323 6 C 0.396 3.604 7 O -0.503 6.503 8 N -0.358 5.358 9 C 0.073 3.927 10 C 0.004 3.996 11 C -0.541 4.541 12 H 0.086 0.914 13 C -0.175 4.175 14 N -0.544 5.544 15 Si 0.774 3.226 16 H -0.206 1.206 17 H -0.222 1.222 18 H -0.183 1.183 19 C -0.215 4.215 20 C -0.194 4.194 21 C -0.126 4.126 22 C -0.130 4.130 23 C 0.355 3.645 24 N -0.392 5.392 25 O -0.465 6.465 26 C -0.106 4.106 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.264 0.736 32 H 0.247 0.753 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.185 0.815 41 H 0.249 0.751 42 H 0.247 0.753 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.098 -18.569 1.295 18.870 hybrid contribution 0.984 1.230 1.153 1.952 sum 4.082 -17.339 2.448 17.980 Atomic orbital electron populations 1.20848 0.89236 1.03516 1.03458 1.19947 0.97660 0.91563 0.98801 1.21476 0.93771 0.98856 0.99349 1.17483 0.91093 0.84819 1.00496 1.42357 1.27810 1.08685 1.53398 1.16134 0.83856 0.80828 0.79566 1.90867 1.22307 1.83317 1.53828 1.44916 1.22801 1.11282 1.56796 1.20440 0.95643 0.83917 0.92706 1.19074 0.95692 0.94674 0.90163 1.20649 1.08712 1.22947 1.01756 0.91391 1.25692 0.94606 0.96407 1.00807 1.70118 1.20784 1.23759 1.39786 0.85714 0.77295 0.78834 0.80743 1.20580 1.22232 1.18334 1.23033 0.95096 1.01426 1.01971 1.22385 0.99596 0.95106 1.02298 1.21140 1.01126 0.88815 1.01516 1.19647 0.94245 0.92416 1.06689 1.18236 0.83404 0.88010 0.74883 1.43569 1.05632 1.14120 1.75875 1.90793 1.69467 1.34059 1.52217 1.21192 0.93139 0.98151 0.98152 0.89718 0.91803 0.89831 0.86116 0.73604 0.75283 0.95583 0.94170 0.93313 0.89673 0.89446 0.91336 0.91757 0.81485 0.75104 0.75300 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 10.00 71.24 0.71 -1.54 16 2 C -0.08 -1.92 5.87 -19.92 -0.12 -2.04 16 3 C -0.11 -3.24 8.34 22.44 0.19 -3.05 16 4 C 0.16 3.84 6.28 38.10 0.24 4.08 16 5 N -0.67 -16.48 5.34 -317.26 -1.69 -18.17 16 6 C 0.70 23.97 8.41 179.05 1.50 25.48 16 7 O -0.62 -26.38 13.80 -3.98 -0.05 -26.44 16 8 N -0.71 -24.82 5.42 -478.54 -2.60 -27.41 16 9 C 0.20 8.49 5.56 86.38 0.48 8.97 16 10 C 0.00 0.21 1.60 -52.93 -0.08 0.12 16 11 C -0.50 -23.99 8.15 25.60 0.21 -23.78 16 12 H 0.07 3.07 7.82 -2.91 -0.02 3.04 16 13 C 0.03 1.30 5.43 84.65 0.46 1.76 16 14 N -0.91 -49.49 12.65 21.45 0.27 -49.22 16 15 Si 0.95 40.16 29.54 68.60 2.03 42.19 16 16 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.30 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 19 C -0.18 -6.74 9.93 30.62 0.30 -6.44 16 20 C -0.16 -6.85 9.17 30.62 0.28 -6.57 16 21 C -0.10 -1.87 9.46 22.66 0.21 -1.66 16 22 C -0.13 -2.62 5.87 -20.10 -0.12 -2.74 16 23 C 0.57 11.46 8.05 86.79 0.70 12.16 16 24 N -0.83 -8.58 8.82 -175.59 -1.55 -10.13 16 25 O -0.58 -16.52 17.18 -3.88 -0.07 -16.58 16 26 C -0.09 -2.00 9.24 22.54 0.21 -1.79 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 29 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 30 H 0.12 4.13 6.25 -2.91 -0.02 4.11 16 31 H 0.43 7.07 8.84 -92.71 -0.82 6.25 16 32 H 0.41 12.64 8.02 -92.70 -0.74 11.90 16 33 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.26 13.67 8.32 -92.70 -0.77 12.90 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 38 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.17 1.49 6.40 -2.91 -0.02 1.48 16 41 H 0.42 1.87 6.86 -92.71 -0.64 1.23 16 42 H 0.41 3.14 8.93 -92.71 -0.83 2.32 16 43 H 0.14 3.04 7.65 -2.91 -0.02 3.02 16 Total: -1.00 -69.88 367.63 -0.42 -70.30 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -1.93 Total: 32.49 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.18 Total: 2.98 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -5.57 Total: -104.94 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.12 Total: -43.02 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -69.88 -0.42 -70.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455836321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.210 kcal (2) G-P(sol) polarization free energy of solvation -69.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds