Wall clock time and date at job start Tue Mar 31 2020 11:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29816 * 126.33647 * 2 1 4 4 O 1.41322 * 109.72849 * 179.97438 * 3 2 1 5 5 C 1.34843 * 109.42312 * 0.02562 * 4 3 2 6 6 N 1.32448 * 133.10126 * 180.02562 * 5 4 3 7 7 C 1.31556 * 122.02847 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.17225 * 180.02562 * 7 6 5 9 9 C 1.38600 * 121.65729 * 0.26813 * 7 6 5 10 10 C 1.39443 * 119.20185 * 359.48123 * 9 7 6 11 11 C 1.47999 * 121.10626 * 180.23555 * 10 9 7 12 12 O 1.21529 * 119.99696 * 172.61252 * 11 10 9 13 13 N 1.34773 * 119.99799 * 352.61208 * 11 10 9 14 14 C 1.46506 * 119.99914 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47234 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47361 * 300.00451 * 15 14 13 17 17 C 1.52997 * 109.46757 * 60.00292 * 15 14 13 18 18 C 1.50693 * 109.46955 * 180.02562 * 15 14 13 19 19 H 1.07994 * 120.00568 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99950 * 180.02562 * 18 15 14 21 21 N 1.31520 * 119.99615 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 120.00125 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47206 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47345 * 120.00007 * 22 20 18 25 25 H 1.48495 * 109.47299 * 239.99856 * 22 20 18 26 26 C 1.40520 * 106.85818 * 359.97438 * 5 4 3 27 27 H 1.08992 * 109.47168 * 258.94031 * 1 2 3 28 28 H 1.08996 * 109.47089 * 18.94438 * 1 2 3 29 29 H 1.09004 * 109.47072 * 138.93843 * 1 2 3 30 30 H 1.08999 * 109.47527 * 89.99419 * 8 7 6 31 31 H 1.09001 * 109.47038 * 209.99535 * 8 7 6 32 32 H 1.09005 * 109.46764 * 329.99250 * 8 7 6 33 33 H 1.07997 * 120.39587 * 179.72409 * 9 7 6 34 34 H 0.97005 * 120.00443 * 0.02562 * 13 11 10 35 35 H 1.08999 * 109.47091 * 300.00391 * 14 13 11 36 36 H 1.08996 * 109.46625 * 60.00325 * 14 13 11 37 37 H 1.08999 * 109.47200 * 59.99701 * 16 15 14 38 38 H 1.09002 * 109.47259 * 179.97438 * 16 15 14 39 39 H 1.08996 * 109.47286 * 299.99988 * 16 15 14 40 40 H 1.09002 * 109.47140 * 60.00260 * 17 15 14 41 41 H 1.09002 * 109.47228 * 180.02562 * 17 15 14 42 42 H 1.09005 * 109.47806 * 299.99958 * 17 15 14 43 43 H 0.97003 * 119.99122 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6418 0.0006 5 6 3.6967 -0.7050 0.0004 6 7 4.7070 -1.5614 0.0012 7 6 4.5181 -2.8633 0.0003 8 6 5.7148 -3.7793 0.0018 9 6 3.2461 -3.4138 -0.0071 10 6 2.1383 -2.5669 -0.0027 11 6 0.7613 -3.1092 -0.0050 12 8 -0.1865 -2.3614 0.1342 13 7 0.5584 -4.4324 -0.1615 14 6 -0.8047 -4.9694 -0.1633 15 6 -0.7550 -6.4862 -0.3570 16 6 -0.0783 -6.8082 -1.6908 17 6 0.0414 -7.1203 0.7851 18 6 -2.1572 -7.0384 -0.3594 19 1 -2.9995 -6.3740 -0.2356 20 6 -2.3647 -8.3921 -0.5196 21 7 -1.3389 -9.2013 -0.6698 22 14 -4.1028 -9.0765 -0.5233 23 1 -5.0721 -7.9669 -0.3374 24 1 -4.3659 -9.7524 -1.8192 25 1 -4.2521 -10.0543 0.5842 26 6 2.3735 -1.1781 0.0003 27 1 -0.3633 -0.1971 1.0085 28 1 -0.3633 0.9720 -0.3336 29 1 -0.3633 -0.7749 -0.6751 30 1 6.0018 -4.0006 1.0298 31 1 5.4633 -4.7067 -0.5128 32 1 6.5451 -3.2931 -0.5105 33 1 3.1146 -4.4857 -0.0122 34 1 1.3150 -5.0294 -0.2723 35 1 -1.2869 -4.7395 0.7868 36 1 -1.3719 -4.5179 -0.9772 37 1 0.9358 -6.4088 -1.6895 38 1 -0.0426 -7.8889 -1.8286 39 1 -0.6456 -6.3565 -2.5045 40 1 -0.4408 -6.8910 1.7354 41 1 0.0772 -8.2010 0.6470 42 1 1.0556 -6.7209 0.7866 43 1 -1.4851 -10.1536 -0.7829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:56 Heat of formation + Delta-G solvation = 44.233723 kcal Electronic energy + Delta-G solvation = -26630.497992 eV Core-core repulsion = 22871.956046 eV Total energy + Delta-G solvation = -3758.541945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25742 -39.88024 -38.90381 -36.65373 -34.80456 -33.80901 -32.64446 -32.24258 -30.85991 -28.77210 -27.85333 -26.13911 -25.87110 -25.36962 -24.24210 -22.92739 -21.39759 -19.91674 -19.07359 -18.27577 -17.75250 -17.45884 -16.65561 -16.00844 -15.42305 -15.11352 -15.03993 -14.57572 -14.49126 -14.34535 -13.59591 -13.52982 -13.44128 -13.15050 -13.02522 -12.92002 -12.75809 -12.40956 -12.27808 -12.12681 -11.60163 -11.47567 -11.33026 -11.19937 -10.98537 -10.75133 -10.53458 -10.35241 -10.23755 -9.79144 -9.69054 -9.61251 -9.40082 -9.16937 -8.91983 -8.68973 -8.47244 -6.13066 -4.23442 -0.04740 0.59306 1.71803 1.90581 2.71140 3.13589 3.20414 3.29863 3.34090 3.44521 3.56270 3.89206 4.11933 4.22868 4.31411 4.47343 4.74259 4.87559 5.07155 5.14429 5.25120 5.32228 5.42191 5.47801 5.56562 5.67365 5.69254 5.97176 6.02773 6.13315 6.21276 6.34061 6.57895 6.66013 6.75308 6.78925 6.86465 6.90145 7.20348 7.34840 7.41492 7.57418 7.69460 7.87581 7.99887 8.22405 8.32006 8.77151 9.43260 10.88436 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020021 B = 0.003301 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.190357 B = 8479.151441 C = 9667.316884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.166 3.834 3 N -0.287 5.287 4 O -0.087 6.087 5 C 0.294 3.706 6 N -0.474 5.474 7 C 0.202 3.798 8 C -0.109 4.109 9 C -0.178 4.178 10 C 0.009 3.991 11 C 0.540 3.460 12 O -0.526 6.526 13 N -0.698 5.698 14 C 0.130 3.870 15 C 0.055 3.945 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.507 4.507 19 H 0.059 0.941 20 C 0.067 3.933 21 N -0.885 5.885 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.211 4.211 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.156 0.844 34 H 0.399 0.601 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.005 0.995 38 H 0.087 0.913 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.087 0.913 42 H 0.005 0.995 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.339 8.825 0.863 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.014 4.014 3 N -0.036 5.036 4 O -0.090 6.090 5 C 0.111 3.889 6 N -0.195 5.195 7 C 0.059 3.941 8 C -0.166 4.166 9 C -0.199 4.199 10 C -0.004 4.004 11 C 0.325 3.675 12 O -0.406 6.406 13 N -0.348 5.348 14 C 0.008 3.992 15 C 0.054 3.946 16 C -0.190 4.190 17 C -0.190 4.190 18 C -0.546 4.546 19 H 0.077 0.923 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.218 4.218 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.173 0.827 34 H 0.236 0.764 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.024 0.976 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.106 0.894 42 H 0.024 0.976 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.642 10.887 0.931 15.253 hybrid contribution -1.301 -1.750 -0.022 2.180 sum 9.342 9.138 0.909 13.099 Atomic orbital electron populations 1.20945 0.82846 1.03918 1.06345 1.24713 0.98973 0.88391 0.89304 1.80113 0.83831 1.17206 1.22487 1.89240 1.23807 1.14714 1.81190 1.20332 0.89152 0.86601 0.92828 1.66336 1.33026 1.02379 1.17793 1.21369 0.95043 0.88202 0.89477 1.20899 0.94229 0.97181 1.04266 1.22201 0.91734 1.01611 1.04334 1.20179 0.95108 0.91118 0.93946 1.18093 0.87451 0.83297 0.78653 1.90726 1.43117 1.56790 1.49928 1.46342 1.11951 1.06327 1.70155 1.21890 0.79268 0.96966 1.01088 1.18384 0.96376 0.86959 0.92834 1.21850 0.94991 1.04410 0.97717 1.21850 0.94786 1.04607 0.97708 1.20980 0.90984 0.92542 1.50089 0.92287 1.24875 0.96972 0.96936 0.94658 1.69803 1.29275 1.03794 1.49435 0.86509 0.84681 0.79055 0.77612 1.19729 1.21018 1.21024 1.21273 0.93277 0.94492 1.12761 0.88356 0.91185 0.85824 0.89102 0.89231 0.89545 0.82673 0.76412 0.92011 0.92048 0.97624 0.89434 0.95297 0.95284 0.89420 0.97644 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 8.50 36.01 0.31 -0.72 16 2 C 0.17 2.38 7.44 -80.23 -0.60 1.78 16 3 N -0.29 -4.37 12.81 34.85 0.45 -3.92 16 4 O -0.09 -1.39 12.06 7.64 0.09 -1.30 16 5 C 0.29 4.40 8.64 -16.43 -0.14 4.26 16 6 N -0.47 -6.39 10.25 -9.24 -0.09 -6.48 16 7 C 0.20 2.15 6.78 -82.57 -0.56 1.60 16 8 C -0.11 -0.72 10.15 36.01 0.37 -0.35 16 9 C -0.18 -1.92 9.20 -39.00 -0.36 -2.28 16 10 C 0.01 0.13 5.93 -104.46 -0.62 -0.49 16 11 C 0.54 8.14 7.78 -12.26 -0.10 8.05 16 12 O -0.53 -8.74 11.39 5.34 0.06 -8.68 16 13 N -0.70 -10.61 4.92 -61.20 -0.30 -10.91 16 14 C 0.13 2.40 4.50 -4.04 -0.02 2.38 16 15 C 0.06 1.16 0.50 -155.67 -0.08 1.08 16 16 C -0.13 -2.70 8.08 37.16 0.30 -2.40 16 17 C -0.13 -2.68 8.08 37.16 0.30 -2.38 16 18 C -0.51 -12.35 8.01 -34.44 -0.28 -12.62 16 19 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 20 C 0.07 1.66 5.15 -17.82 -0.09 1.57 16 21 N -0.88 -22.22 9.35 55.43 0.52 -21.71 16 22 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.21 -3.08 6.15 -104.83 -0.65 -3.73 16 27 H 0.10 1.19 7.82 -51.93 -0.41 0.79 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.12 1.67 5.58 -52.03 -0.29 1.38 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.16 1.29 6.60 -52.49 -0.35 0.94 16 34 H 0.40 5.38 4.37 -40.82 -0.18 5.20 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 38 H 0.09 2.02 6.07 -51.93 -0.32 1.71 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 2.02 6.07 -51.93 -0.32 1.70 16 42 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 43 H 0.26 6.34 8.31 -40.82 -0.34 6.00 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -27.40 347.88 -6.75 -34.15 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.48 Total: 3.18 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.21 Total: -4.26 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.57 Total: -43.02 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.15 Total: -9.97 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.40 -6.75 -34.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.388 kcal (2) G-P(sol) polarization free energy of solvation -27.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds