Wall clock time and date at job start Tue Mar 31 2020 11:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29816 * 126.33647 * 2 1 4 4 O 1.41322 * 109.72849 * 179.97438 * 3 2 1 5 5 C 1.34843 * 109.42312 * 0.02562 * 4 3 2 6 6 N 1.32448 * 133.10126 * 180.02562 * 5 4 3 7 7 C 1.31556 * 122.02847 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.17225 * 180.02562 * 7 6 5 9 9 C 1.38600 * 121.65729 * 0.26813 * 7 6 5 10 10 C 1.39443 * 119.20185 * 359.48123 * 9 7 6 11 11 C 1.47999 * 121.10626 * 180.23555 * 10 9 7 12 12 O 1.21529 * 119.99696 * 172.61252 * 11 10 9 13 13 N 1.34773 * 119.99799 * 352.61208 * 11 10 9 14 14 C 1.46506 * 119.99914 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47234 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47361 * 300.00451 * 15 14 13 17 17 C 1.52997 * 109.46757 * 60.00292 * 15 14 13 18 18 C 1.50693 * 109.46955 * 180.02562 * 15 14 13 19 19 H 1.07994 * 120.00568 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99950 * 180.02562 * 18 15 14 21 21 N 1.31520 * 119.99615 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 120.00125 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47206 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47345 * 120.00007 * 22 20 18 25 25 H 1.48495 * 109.47299 * 239.99856 * 22 20 18 26 26 C 1.40520 * 106.85818 * 359.97438 * 5 4 3 27 27 H 1.08992 * 109.47168 * 258.94031 * 1 2 3 28 28 H 1.08996 * 109.47089 * 18.94438 * 1 2 3 29 29 H 1.09004 * 109.47072 * 138.93843 * 1 2 3 30 30 H 1.08999 * 109.47527 * 89.99419 * 8 7 6 31 31 H 1.09001 * 109.47038 * 209.99535 * 8 7 6 32 32 H 1.09005 * 109.46764 * 329.99250 * 8 7 6 33 33 H 1.07997 * 120.39587 * 179.72409 * 9 7 6 34 34 H 0.97005 * 120.00443 * 0.02562 * 13 11 10 35 35 H 1.08999 * 109.47091 * 300.00391 * 14 13 11 36 36 H 1.08996 * 109.46625 * 60.00325 * 14 13 11 37 37 H 1.08999 * 109.47200 * 59.99701 * 16 15 14 38 38 H 1.09002 * 109.47259 * 179.97438 * 16 15 14 39 39 H 1.08996 * 109.47286 * 299.99988 * 16 15 14 40 40 H 1.09002 * 109.47140 * 60.00260 * 17 15 14 41 41 H 1.09002 * 109.47228 * 180.02562 * 17 15 14 42 42 H 1.09005 * 109.47806 * 299.99958 * 17 15 14 43 43 H 0.97003 * 119.99122 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6418 0.0006 5 6 3.6967 -0.7050 0.0004 6 7 4.7070 -1.5614 0.0012 7 6 4.5181 -2.8633 0.0003 8 6 5.7148 -3.7793 0.0018 9 6 3.2461 -3.4138 -0.0071 10 6 2.1383 -2.5669 -0.0027 11 6 0.7613 -3.1092 -0.0050 12 8 -0.1865 -2.3614 0.1342 13 7 0.5584 -4.4324 -0.1615 14 6 -0.8047 -4.9694 -0.1633 15 6 -0.7550 -6.4862 -0.3570 16 6 -0.0783 -6.8082 -1.6908 17 6 0.0414 -7.1203 0.7851 18 6 -2.1572 -7.0384 -0.3594 19 1 -2.9995 -6.3740 -0.2356 20 6 -2.3647 -8.3921 -0.5196 21 7 -1.3389 -9.2013 -0.6698 22 14 -4.1028 -9.0765 -0.5233 23 1 -5.0721 -7.9669 -0.3374 24 1 -4.3659 -9.7524 -1.8192 25 1 -4.2521 -10.0543 0.5842 26 6 2.3735 -1.1781 0.0003 27 1 -0.3633 -0.1971 1.0085 28 1 -0.3633 0.9720 -0.3336 29 1 -0.3633 -0.7749 -0.6751 30 1 6.0018 -4.0006 1.0298 31 1 5.4633 -4.7067 -0.5128 32 1 6.5451 -3.2931 -0.5105 33 1 3.1146 -4.4857 -0.0122 34 1 1.3150 -5.0294 -0.2723 35 1 -1.2869 -4.7395 0.7868 36 1 -1.3719 -4.5179 -0.9772 37 1 0.9358 -6.4088 -1.6895 38 1 -0.0426 -7.8889 -1.8286 39 1 -0.6456 -6.3565 -2.5045 40 1 -0.4408 -6.8910 1.7354 41 1 0.0772 -8.2010 0.6470 42 1 1.0556 -6.7209 0.7866 43 1 -1.4851 -10.1536 -0.7829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:55 Heat of formation + Delta-G solvation = 27.011844 kcal Electronic energy + Delta-G solvation = -26631.244788 eV Core-core repulsion = 22871.956046 eV Total energy + Delta-G solvation = -3759.288742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.30397 -41.06222 -39.95575 -38.18564 -35.90790 -35.22033 -33.79400 -33.18827 -32.42147 -29.80014 -28.71268 -27.54560 -27.50671 -27.04989 -25.42578 -23.94834 -22.49606 -21.08423 -20.65799 -19.30588 -18.92611 -18.55269 -17.74045 -17.70563 -16.71771 -16.62124 -16.33227 -15.94112 -15.44138 -15.14981 -14.82114 -14.77834 -14.72902 -14.49153 -14.14205 -13.99769 -13.95903 -13.46536 -13.19299 -13.08254 -13.03295 -12.95433 -12.69211 -12.60390 -12.49724 -12.24236 -12.20704 -12.10419 -11.44558 -11.36364 -11.19207 -10.73828 -10.67780 -10.58771 -10.36505 -10.11677 -9.97733 -7.99647 -6.14109 -1.05882 -0.39163 0.64844 0.86346 1.43392 1.49300 1.56662 1.62264 1.93849 2.41047 2.48369 2.54471 2.88116 3.20544 3.24096 3.25159 3.46678 3.81159 3.98167 4.17831 4.37138 4.42804 4.53192 4.56432 4.63493 4.69268 4.76219 4.82287 4.89125 4.91960 5.02755 5.10478 5.12642 5.17533 5.25167 5.35076 5.42422 5.60132 5.72419 5.72780 5.83011 6.21471 6.25796 6.40090 6.46919 6.49146 6.90519 7.10328 7.53863 8.99023 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020021 B = 0.003301 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.190357 B = 8479.151441 C = 9667.316884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.165 3.835 3 N -0.303 5.303 4 O -0.106 6.106 5 C 0.277 3.723 6 N -0.488 5.488 7 C 0.209 3.791 8 C -0.108 4.108 9 C -0.160 4.160 10 C -0.001 4.001 11 C 0.543 3.457 12 O -0.544 6.544 13 N -0.691 5.691 14 C 0.147 3.853 15 C 0.050 3.950 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.525 4.525 19 H 0.046 0.954 20 C 0.030 3.970 21 N -0.897 5.897 22 Si 0.939 3.061 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.284 1.284 26 C -0.229 4.229 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.189 0.811 34 H 0.410 0.590 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.771 8.047 0.935 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.015 4.015 3 N -0.054 5.054 4 O -0.108 6.108 5 C 0.095 3.905 6 N -0.210 5.210 7 C 0.066 3.934 8 C -0.165 4.165 9 C -0.181 4.181 10 C -0.014 4.014 11 C 0.330 3.670 12 O -0.423 6.423 13 N -0.342 5.342 14 C 0.024 3.976 15 C 0.049 3.951 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.563 4.563 19 H 0.065 0.935 20 C -0.170 4.170 21 N -0.536 5.536 22 Si 0.767 3.233 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.236 4.236 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.206 0.794 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.095 10.111 1.002 15.796 hybrid contribution -1.683 -1.550 -0.041 2.288 sum 10.412 8.561 0.961 13.514 Atomic orbital electron populations 1.20908 0.81712 1.04580 1.06105 1.25019 0.99620 0.88374 0.88504 1.80073 0.83732 1.17772 1.23780 1.89176 1.24294 1.15673 1.81646 1.20540 0.89816 0.86396 0.93760 1.66464 1.32828 1.03435 1.18318 1.22157 0.96553 0.87602 0.87134 1.21123 0.92440 0.97142 1.05785 1.22608 0.90848 1.02835 1.01759 1.20038 0.94810 0.90923 0.95617 1.18271 0.88015 0.82882 0.77854 1.90735 1.44019 1.57197 1.50393 1.46051 1.10890 1.06600 1.70659 1.21422 0.80835 0.95332 1.00009 1.18378 0.94869 0.88346 0.93489 1.21695 0.96836 1.02661 0.96902 1.21695 0.96697 1.02907 0.96791 1.21301 0.92586 0.92658 1.49801 0.93530 1.25383 0.99292 0.97377 0.94911 1.69904 1.30102 1.03698 1.49888 0.85799 0.81955 0.78256 0.77312 1.19957 1.21067 1.21048 1.21379 0.93216 0.95098 1.13924 0.88263 0.89346 0.86862 0.87289 0.86490 0.89254 0.79430 0.75147 0.93174 0.93221 0.94085 0.92032 0.96274 0.96204 0.92037 0.93959 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 8.50 71.24 0.61 -1.24 16 2 C 0.16 4.69 7.44 44.94 0.33 5.02 16 3 N -0.30 -9.32 12.81 -43.67 -0.56 -9.88 16 4 O -0.11 -3.43 12.06 29.72 0.36 -3.08 16 5 C 0.28 8.17 8.64 85.16 0.74 8.91 16 6 N -0.49 -12.37 10.25 -296.37 -3.04 -15.41 16 7 C 0.21 3.77 6.78 42.69 0.29 4.06 16 8 C -0.11 -0.95 10.15 71.24 0.72 -0.23 16 9 C -0.16 -2.88 9.20 22.65 0.21 -2.67 16 10 C 0.00 -0.03 5.93 -19.76 -0.12 -0.15 16 11 C 0.54 15.42 7.78 86.83 0.68 16.10 16 12 O -0.54 -17.61 11.39 -3.81 -0.04 -17.66 16 13 N -0.69 -19.25 4.92 -465.83 -2.29 -21.54 16 14 C 0.15 5.26 4.50 86.38 0.39 5.65 16 15 C 0.05 2.03 0.50 -52.93 -0.03 2.00 16 16 C -0.12 -4.82 8.08 71.98 0.58 -4.24 16 17 C -0.12 -4.78 8.08 71.98 0.58 -4.20 16 18 C -0.52 -25.48 8.01 25.60 0.21 -25.27 16 19 H 0.05 2.32 7.74 -2.91 -0.02 2.29 16 20 C 0.03 1.49 5.15 84.65 0.44 1.93 16 21 N -0.90 -44.84 9.35 21.45 0.20 -44.64 16 22 Si 0.94 40.39 29.54 68.60 2.03 42.42 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 26 C -0.23 -6.54 6.15 -20.00 -0.12 -6.66 16 27 H 0.10 2.38 7.82 -2.39 -0.02 2.37 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.11 3.04 5.58 -4.06 -0.02 3.02 16 30 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.12 0.46 8.07 -2.39 -0.02 0.44 16 32 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.19 2.08 6.60 -2.91 -0.02 2.06 16 34 H 0.41 9.39 4.37 -92.70 -0.40 8.98 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.27 6.86 -2.39 -0.02 1.25 16 38 H 0.06 2.77 6.07 -2.39 -0.01 2.75 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.06 2.75 6.07 -2.39 -0.01 2.73 16 42 H 0.04 1.28 6.86 -2.38 -0.02 1.27 16 43 H 0.26 12.56 8.31 -92.71 -0.77 11.79 16 Total: -1.00 -60.20 347.88 2.80 -57.41 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.65 Total: 13.36 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.50 Total: -0.99 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -5.69 Total: -91.46 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.31 Total: -20.73 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -60.20 2.80 -57.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.417 kcal (2) G-P(sol) polarization free energy of solvation -60.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds