Wall clock time and date at job start Tue Mar 31 2020 11:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34757 * 125.65038 * 2 1 4 4 C 1.40877 * 107.05905 * 180.02562 * 3 2 1 5 5 C 1.36147 * 106.72946 * 0.02562 * 4 3 2 6 6 C 1.47331 * 125.94893 * 179.97438 * 5 4 3 7 7 C 1.37006 * 126.63296 * 179.97438 * 6 5 4 8 8 C 1.41113 * 105.42013 * 179.97438 * 7 6 5 9 9 C 1.47750 * 126.30179 * 180.02562 * 8 7 6 10 10 O 1.21565 * 119.99695 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99884 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00013 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47246 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46929 * 300.00159 * 13 12 11 15 15 C 1.52998 * 109.47146 * 59.99807 * 13 12 11 16 16 C 1.50696 * 109.47018 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00360 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99675 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00055 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 119.99655 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47166 * 90.00522 * 20 18 16 22 22 H 1.48498 * 109.47185 * 209.99958 * 20 18 16 23 23 H 1.48493 * 109.47666 * 330.00572 * 20 18 16 24 24 N 1.31857 * 107.39281 * 359.74234 * 8 7 6 25 25 N 1.28447 * 110.51124 * 0.43683 * 24 8 7 26 26 H 0.97001 * 125.03132 * 179.82629 * 25 24 8 27 27 O 1.34331 * 125.64570 * 180.30419 * 2 1 3 28 28 H 1.09010 * 109.46883 * 89.99874 * 1 2 3 29 29 H 1.08995 * 109.47756 * 210.00144 * 1 2 3 30 30 H 1.09000 * 109.47113 * 330.00927 * 1 2 3 31 31 H 1.08000 * 126.47197 * 0.02562 * 3 2 1 32 32 H 1.08005 * 126.63740 * 179.97438 * 4 3 2 33 33 H 1.08000 * 127.29032 * 359.95504 * 7 6 5 34 34 H 0.97003 * 119.99753 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.46963 * 299.99682 * 12 11 9 36 36 H 1.08997 * 109.46706 * 59.99839 * 12 11 9 37 37 H 1.08996 * 109.47302 * 59.99478 * 14 13 12 38 38 H 1.08997 * 109.47130 * 180.02562 * 14 13 12 39 39 H 1.09003 * 109.46738 * 300.00115 * 14 13 12 40 40 H 1.08994 * 109.47003 * 60.00181 * 15 13 12 41 41 H 1.08997 * 109.47017 * 180.02562 * 15 13 12 42 42 H 1.09004 * 109.47052 * 300.00088 * 15 13 12 43 43 H 0.96994 * 119.99613 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2924 1.0950 0.0000 4 6 3.6276 0.6459 -0.0006 5 6 3.5834 -0.7149 -0.0015 6 6 4.7474 -1.6181 -0.0029 7 6 4.7192 -2.9879 -0.0034 8 6 6.0715 -3.3910 -0.0054 9 6 6.5697 -4.7819 -0.0071 10 8 5.7834 -5.7091 -0.0064 11 7 7.8957 -5.0228 -0.0095 12 6 8.3897 -6.4020 -0.0106 13 6 9.9197 -6.3958 -0.0127 14 6 10.4251 -5.6720 -1.2624 15 6 10.4284 -5.6729 1.2361 16 6 10.4278 -7.8145 -0.0145 17 1 9.7293 -8.6383 -0.0138 18 6 11.7844 -8.0609 -0.0170 19 7 12.6349 -7.0578 -0.0174 20 14 12.4142 -9.8195 -0.0186 21 1 12.5786 -10.2852 -1.4191 22 1 13.7238 -9.8769 0.6790 23 1 11.4409 -10.6945 0.6829 24 7 6.8087 -2.2977 -0.0117 25 7 6.0629 -1.2520 -0.0047 26 1 6.3862 -0.3374 -0.0049 27 8 2.2898 -1.0916 -0.0058 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 1.9608 2.1229 0.0004 32 1 4.5148 1.2618 -0.0012 33 1 3.8467 -3.6244 -0.0021 34 1 8.5230 -4.2829 -0.0105 35 1 8.0301 -6.9175 0.8799 36 1 8.0269 -6.9171 -0.9001 37 1 10.0575 -4.6459 -1.2616 38 1 11.5150 -5.6680 -1.2641 39 1 10.0625 -6.1870 -2.1520 40 1 10.0684 -6.1885 2.1263 41 1 11.5184 -5.6681 1.2344 42 1 10.0609 -4.6467 1.2369 43 1 13.5892 -7.2312 -0.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:38 Heat of formation + Delta-G solvation = 43.439350 kcal Electronic energy + Delta-G solvation = -25351.748080 eV Core-core repulsion = 21593.171688 eV Total energy + Delta-G solvation = -3758.576392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.14147 -42.47686 -38.96669 -36.29222 -33.70402 -33.43492 -33.04680 -31.98096 -30.95757 -30.46250 -26.65065 -25.89058 -25.66342 -25.15032 -23.38197 -22.18486 -22.13430 -20.66059 -19.71722 -18.96019 -18.64969 -17.13290 -16.74970 -16.15034 -15.75214 -15.73871 -15.06080 -14.76538 -14.53832 -14.40805 -14.01997 -13.61269 -13.46101 -13.41830 -13.29842 -12.86936 -12.80402 -12.71033 -12.26238 -12.12662 -11.33849 -11.18372 -11.12792 -10.83145 -10.66115 -10.57240 -10.33669 -10.17929 -9.98400 -9.78092 -9.58208 -9.53445 -9.26054 -8.74207 -8.41707 -8.27823 -8.23078 -5.97955 -4.07867 0.67034 1.65587 1.91406 1.93911 2.55473 2.88732 3.31294 3.38124 3.41956 3.64160 3.69034 4.09863 4.35342 4.41229 4.46780 4.50801 4.84116 5.00021 5.02360 5.19701 5.28657 5.29223 5.37521 5.46630 5.61965 5.66583 6.04551 6.14070 6.28103 6.36991 6.56165 6.59680 6.72172 6.81047 6.90847 6.99694 7.06069 7.07738 7.40459 7.59307 7.61259 7.73875 8.06025 8.11113 8.20691 8.42603 8.68097 8.92756 9.57541 11.03446 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041382 B = 0.002176 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.454663 B =12863.022143 C =13343.117190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.001 4.001 3 C -0.207 4.207 4 C -0.192 4.192 5 C 0.058 3.942 6 C 0.069 3.931 7 C -0.141 4.141 8 C 0.000 4.000 9 C 0.590 3.410 10 O -0.541 6.541 11 N -0.699 5.699 12 C 0.130 3.870 13 C 0.055 3.945 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.504 4.504 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.234 5.234 25 N -0.368 5.368 26 H 0.448 0.552 27 O -0.158 6.158 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.405 0.595 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.008 0.992 38 H 0.085 0.915 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.085 0.915 42 H 0.008 0.992 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.076 19.378 0.051 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 C -0.226 4.226 4 C -0.212 4.212 5 C 0.006 3.994 6 C -0.055 4.055 7 C -0.169 4.169 8 C -0.160 4.160 9 C 0.373 3.627 10 O -0.417 6.417 11 N -0.349 5.349 12 C 0.008 3.992 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.722 3.278 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 N -0.070 5.070 25 N -0.085 5.085 26 H 0.293 0.707 27 O -0.053 6.053 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.187 0.813 34 H 0.241 0.759 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.027 0.973 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.408 18.685 0.049 26.229 hybrid contribution 0.169 -0.023 -0.018 0.171 sum -18.239 18.662 0.031 26.094 Atomic orbital electron populations 1.20371 0.84576 1.04405 1.03865 1.22639 0.94141 0.83706 1.04761 1.21459 0.92192 0.99623 1.09372 1.21736 0.98778 0.92731 1.07983 1.18731 0.81323 0.91042 1.08303 1.18183 0.83460 0.92262 1.11593 1.21870 0.97757 0.91970 1.05328 1.22141 0.91742 0.93298 1.08801 1.16884 0.83212 0.84995 0.77636 1.90773 1.56101 1.43456 1.51415 1.46207 1.05611 1.11373 1.71757 1.21818 0.97352 0.79255 1.00804 1.18366 0.87028 0.96180 0.92949 1.21836 1.04478 0.95110 0.97518 1.21832 1.04471 0.95111 0.97515 1.20979 0.91675 0.90881 1.50736 0.92373 1.24889 0.96854 0.96990 0.94876 1.69810 1.02053 1.29931 1.50626 0.86566 0.78166 0.85032 0.78061 1.20757 1.21329 1.19906 1.73631 1.22211 0.93224 1.17966 1.43400 1.02050 1.08980 1.54082 0.70699 1.84041 1.15066 1.34854 1.71345 0.89744 0.90167 0.89057 0.82925 0.83218 0.81314 0.75885 0.92349 0.92348 0.97346 0.89587 0.95428 0.95413 0.89596 0.97347 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.41 36.00 0.37 0.05 16 2 C 0.00 -0.01 7.31 -35.54 -0.26 -0.27 16 3 C -0.21 -1.54 10.78 -39.82 -0.43 -1.97 16 4 C -0.19 -1.58 10.84 -39.34 -0.43 -2.00 16 5 C 0.06 0.61 7.17 -36.64 -0.26 0.34 16 6 C 0.07 0.81 7.10 -82.51 -0.59 0.23 16 7 C -0.14 -2.00 10.76 -38.94 -0.42 -2.42 16 8 C 0.00 0.01 7.11 -82.88 -0.59 -0.58 16 9 C 0.59 11.29 7.83 -12.37 -0.10 11.19 16 10 O -0.54 -11.80 16.91 5.31 0.09 -11.71 16 11 N -0.70 -13.50 4.96 -61.28 -0.30 -13.81 16 12 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 13 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 14 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 15 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 16 C -0.50 -13.33 8.01 -34.44 -0.28 -13.61 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.85 9.35 55.43 0.52 -23.33 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 N -0.23 -3.28 11.88 33.36 0.40 -2.88 16 25 N -0.37 -3.89 6.90 33.25 0.23 -3.66 16 26 H 0.45 2.91 8.96 -190.45 -1.71 1.20 16 27 O -0.16 -1.71 10.68 4.44 0.05 -1.66 16 28 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 34 H 0.40 7.41 5.88 -40.82 -0.24 7.17 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 38 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 42 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 43 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -31.25 363.10 -8.19 -39.44 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.06 Total: 5.10 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.56 Total: -8.85 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.84 Total: -43.68 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.14 Total: -13.37 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.25 -8.19 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.878 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds