Wall clock time and date at job start Tue Mar 31 2020 11:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34757 * 125.65038 * 2 1 4 4 C 1.40877 * 107.05905 * 180.02562 * 3 2 1 5 5 C 1.36147 * 106.72946 * 0.02562 * 4 3 2 6 6 C 1.47331 * 125.94893 * 179.97438 * 5 4 3 7 7 C 1.37006 * 126.63296 * 179.97438 * 6 5 4 8 8 C 1.41113 * 105.42013 * 179.97438 * 7 6 5 9 9 C 1.47750 * 126.30179 * 180.02562 * 8 7 6 10 10 O 1.21565 * 119.99695 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99884 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00013 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47246 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46929 * 300.00159 * 13 12 11 15 15 C 1.52998 * 109.47146 * 59.99807 * 13 12 11 16 16 C 1.50696 * 109.47018 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00360 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99675 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00055 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 119.99655 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47166 * 90.00522 * 20 18 16 22 22 H 1.48498 * 109.47185 * 209.99958 * 20 18 16 23 23 H 1.48493 * 109.47666 * 330.00572 * 20 18 16 24 24 N 1.31857 * 107.39281 * 359.74234 * 8 7 6 25 25 N 1.28447 * 110.51124 * 0.43683 * 24 8 7 26 26 H 0.97001 * 125.03132 * 179.82629 * 25 24 8 27 27 O 1.34331 * 125.64570 * 180.30419 * 2 1 3 28 28 H 1.09010 * 109.46883 * 89.99874 * 1 2 3 29 29 H 1.08995 * 109.47756 * 210.00144 * 1 2 3 30 30 H 1.09000 * 109.47113 * 330.00927 * 1 2 3 31 31 H 1.08000 * 126.47197 * 0.02562 * 3 2 1 32 32 H 1.08005 * 126.63740 * 179.97438 * 4 3 2 33 33 H 1.08000 * 127.29032 * 359.95504 * 7 6 5 34 34 H 0.97003 * 119.99753 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.46963 * 299.99682 * 12 11 9 36 36 H 1.08997 * 109.46706 * 59.99839 * 12 11 9 37 37 H 1.08996 * 109.47302 * 59.99478 * 14 13 12 38 38 H 1.08997 * 109.47130 * 180.02562 * 14 13 12 39 39 H 1.09003 * 109.46738 * 300.00115 * 14 13 12 40 40 H 1.08994 * 109.47003 * 60.00181 * 15 13 12 41 41 H 1.08997 * 109.47017 * 180.02562 * 15 13 12 42 42 H 1.09004 * 109.47052 * 300.00088 * 15 13 12 43 43 H 0.96994 * 119.99613 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2924 1.0950 0.0000 4 6 3.6276 0.6459 -0.0006 5 6 3.5834 -0.7149 -0.0015 6 6 4.7474 -1.6181 -0.0029 7 6 4.7192 -2.9879 -0.0034 8 6 6.0715 -3.3910 -0.0054 9 6 6.5697 -4.7819 -0.0071 10 8 5.7834 -5.7091 -0.0064 11 7 7.8957 -5.0228 -0.0095 12 6 8.3897 -6.4020 -0.0106 13 6 9.9197 -6.3958 -0.0127 14 6 10.4251 -5.6720 -1.2624 15 6 10.4284 -5.6729 1.2361 16 6 10.4278 -7.8145 -0.0145 17 1 9.7293 -8.6383 -0.0138 18 6 11.7844 -8.0609 -0.0170 19 7 12.6349 -7.0578 -0.0174 20 14 12.4142 -9.8195 -0.0186 21 1 12.5786 -10.2852 -1.4191 22 1 13.7238 -9.8769 0.6790 23 1 11.4409 -10.6945 0.6829 24 7 6.8087 -2.2977 -0.0117 25 7 6.0629 -1.2520 -0.0047 26 1 6.3862 -0.3374 -0.0049 27 8 2.2898 -1.0916 -0.0058 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 1.9608 2.1229 0.0004 32 1 4.5148 1.2618 -0.0012 33 1 3.8467 -3.6244 -0.0021 34 1 8.5230 -4.2829 -0.0105 35 1 8.0301 -6.9175 0.8799 36 1 8.0269 -6.9171 -0.9001 37 1 10.0575 -4.6459 -1.2616 38 1 11.5150 -5.6680 -1.2641 39 1 10.0625 -6.1870 -2.1520 40 1 10.0684 -6.1885 2.1263 41 1 11.5184 -5.6681 1.2344 42 1 10.0609 -4.6467 1.2369 43 1 13.5892 -7.2312 -0.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:37 Heat of formation + Delta-G solvation = 23.755091 kcal Electronic energy + Delta-G solvation = -25352.601653 eV Core-core repulsion = 21593.171688 eV Total energy + Delta-G solvation = -3759.429965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.96924 -43.33763 -40.55618 -38.11347 -35.07936 -34.35461 -33.93143 -33.15456 -32.54560 -31.38690 -27.71706 -27.56191 -27.25441 -26.99980 -24.70676 -23.08173 -22.91124 -21.39376 -21.12239 -20.59667 -19.72745 -18.49897 -17.69234 -17.49577 -17.06752 -16.82955 -16.52217 -16.48775 -15.91084 -15.56526 -14.98222 -14.93147 -14.74836 -14.48085 -14.01698 -13.99906 -13.88295 -13.78042 -13.56387 -13.19902 -13.09239 -12.72106 -12.68559 -12.58647 -12.25240 -12.25134 -12.12552 -11.48270 -11.44284 -11.35217 -11.11111 -10.73456 -10.69569 -10.61363 -10.38533 -9.97156 -8.98099 -8.00372 -6.16104 -0.12952 0.43766 1.18123 1.22100 1.44359 1.46828 1.55425 1.78164 2.00914 2.27912 2.34668 2.50291 3.21424 3.23061 3.33628 3.79753 3.94827 4.03866 4.19694 4.39994 4.45873 4.51457 4.58626 4.71512 4.73304 4.76797 4.80342 4.95353 4.98260 5.06118 5.06595 5.13110 5.17173 5.20006 5.32880 5.52874 5.54507 5.67263 5.68929 5.79159 6.06268 6.14128 6.21405 6.43759 6.45258 6.71768 6.87552 7.15777 7.51169 8.98866 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041382 B = 0.002176 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.454663 B =12863.022143 C =13343.117190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.004 4.004 3 C -0.216 4.216 4 C -0.170 4.170 5 C 0.015 3.985 6 C 0.095 3.905 7 C -0.167 4.167 8 C -0.023 4.023 9 C 0.592 3.408 10 O -0.575 6.575 11 N -0.695 5.695 12 C 0.144 3.856 13 C 0.051 3.949 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.526 4.526 17 H 0.048 0.952 18 C 0.026 3.974 19 N -0.900 5.900 20 Si 0.948 3.052 21 H -0.279 1.279 22 H -0.283 1.283 23 H -0.275 1.275 24 N -0.238 5.238 25 N -0.342 5.342 26 H 0.467 0.533 27 O -0.183 6.183 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.182 0.818 32 H 0.179 0.821 33 H 0.164 0.836 34 H 0.411 0.589 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.172 22.188 0.048 29.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 C -0.234 4.234 4 C -0.191 4.191 5 C -0.036 4.036 6 C -0.030 4.030 7 C -0.195 4.195 8 C -0.181 4.181 9 C 0.377 3.623 10 O -0.453 6.453 11 N -0.345 5.345 12 C 0.021 3.979 13 C 0.050 3.950 14 C -0.179 4.179 15 C -0.179 4.179 16 C -0.564 4.564 17 H 0.066 0.934 18 C -0.174 4.174 19 N -0.538 5.538 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.200 1.200 24 N -0.076 5.076 25 N -0.062 5.062 26 H 0.317 0.683 27 O -0.080 6.080 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.199 0.801 32 H 0.196 0.804 33 H 0.182 0.818 34 H 0.249 0.751 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.483 21.533 0.046 29.039 hybrid contribution 0.359 -0.710 -0.019 0.796 sum -19.124 20.823 0.027 28.272 Atomic orbital electron populations 1.20589 0.82248 1.05570 1.04976 1.23489 0.95609 0.83387 1.03052 1.21883 0.91671 1.00821 1.09045 1.22208 1.00361 0.91859 1.04631 1.18718 0.81014 0.91663 1.12192 1.18211 0.84243 0.91585 1.09002 1.21879 0.96958 0.93307 1.07356 1.21609 0.92639 0.92194 1.11690 1.17220 0.82571 0.86165 0.76350 1.90742 1.56766 1.45035 1.52796 1.46019 1.06048 1.10345 1.72136 1.21437 0.96170 0.80619 0.99677 1.18372 0.87998 0.95180 0.93450 1.21679 1.02917 0.96399 0.96897 1.21674 1.02910 0.96401 0.96895 1.21246 0.91953 0.92046 1.51175 0.93407 1.25490 0.97049 1.00118 0.94733 1.69916 1.02106 1.31132 1.50690 0.85716 0.77556 0.81303 0.77956 1.20518 1.20899 1.19993 1.73540 1.22433 0.93383 1.18246 1.43400 1.01538 1.09292 1.52003 0.68284 1.84027 1.15536 1.36442 1.71970 0.88537 0.90255 0.86630 0.80097 0.80365 0.81797 0.75137 0.93548 0.93528 0.94920 0.91704 0.96106 0.96080 0.91713 0.94921 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.41 71.23 0.74 0.27 16 2 C 0.00 -0.06 7.31 24.88 0.18 0.12 16 3 C -0.22 -2.47 10.78 22.12 0.24 -2.24 16 4 C -0.17 -2.25 10.84 22.43 0.24 -2.01 16 5 C 0.02 0.29 7.17 24.18 0.17 0.47 16 6 C 0.09 2.12 7.10 40.51 0.29 2.41 16 7 C -0.17 -4.79 10.76 22.69 0.24 -4.54 16 8 C -0.02 -0.74 7.11 42.36 0.30 -0.44 16 9 C 0.59 23.11 7.83 86.76 0.68 23.79 16 10 O -0.57 -25.96 16.91 -3.92 -0.07 -26.02 16 11 N -0.69 -26.99 4.96 -466.06 -2.31 -29.30 16 12 C 0.14 6.44 4.50 86.38 0.39 6.83 16 13 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 14 C -0.12 -5.62 8.08 71.98 0.58 -5.03 16 15 C -0.12 -5.61 8.08 71.98 0.58 -5.03 16 16 C -0.53 -28.23 8.01 25.60 0.21 -28.03 16 17 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 18 C 0.03 1.37 5.15 84.66 0.44 1.81 16 19 N -0.90 -48.71 9.35 21.45 0.20 -48.51 16 20 Si 0.95 43.17 29.54 68.60 2.03 45.19 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 N -0.24 -6.39 11.88 -48.37 -0.57 -6.97 16 25 N -0.34 -6.54 6.90 -48.72 -0.34 -6.88 16 26 H 0.47 4.64 8.96 -220.00 -1.97 2.67 16 27 O -0.18 -3.79 10.68 -7.02 -0.07 -3.87 16 28 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.16 4.68 8.06 -2.91 -0.02 4.65 16 34 H 0.41 14.78 5.88 -92.71 -0.54 14.23 16 35 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 38 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 42 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 43 H 0.26 13.54 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -68.50 363.10 2.66 -65.84 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -1.46 Total: 19.73 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.26 Total: -9.22 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -3.02 Total: -91.65 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.14 Total: -29.89 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -68.50 2.66 -65.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.594 kcal (2) G-P(sol) polarization free energy of solvation -68.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds