Wall clock time and date at job start Tue Mar 31 2020 11:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 119.89062 * 2 1 4 4 C 1.37980 * 120.22131 * 180.02562 * 3 2 1 5 5 C 1.39613 * 119.99573 * 0.02562 * 4 3 2 6 6 C 1.47865 * 120.10772 * 180.02562 * 5 4 3 7 7 O 1.21550 * 119.99468 * 179.97438 * 6 5 4 8 8 N 1.34772 * 120.00157 * 359.97438 * 6 5 4 9 9 C 1.46501 * 119.99945 * 180.02562 * 8 6 5 10 10 C 1.52993 * 117.50109 * 223.62077 * 9 8 6 11 11 C 1.53003 * 60.00243 * 252.50739 * 10 9 8 12 12 C 1.39450 * 119.77822 * 359.97438 * 5 4 3 13 13 C 1.38636 * 119.78174 * 0.02562 * 12 5 4 14 14 N 1.39975 * 120.00088 * 179.97438 * 13 12 5 15 15 C 1.34775 * 120.00103 * 24.81760 * 14 13 12 16 16 O 1.21584 * 120.00034 * 5.62577 * 15 14 13 17 17 N 1.34770 * 119.99961 * 185.62061 * 15 14 13 18 18 C 1.46507 * 120.00228 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47268 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99740 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99581 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00253 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99619 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47197 * 90.00143 * 23 21 19 25 25 H 1.48505 * 109.47236 * 210.00092 * 23 21 19 26 26 H 1.48495 * 109.47264 * 330.00227 * 23 21 19 27 27 H 1.09004 * 109.47493 * 89.99907 * 1 2 3 28 28 H 1.08995 * 109.47185 * 209.99935 * 1 2 3 29 29 H 1.09001 * 109.47112 * 329.99917 * 1 2 3 30 30 H 1.07995 * 119.89041 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.99779 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00274 * 359.97438 * 8 6 5 33 33 H 1.08999 * 115.54900 * 9.33166 * 9 8 6 34 34 H 1.09003 * 117.50179 * 359.97438 * 10 9 8 35 35 H 1.09002 * 117.49906 * 145.02069 * 10 9 8 36 36 H 1.08994 * 117.49952 * 252.50620 * 11 10 9 37 37 H 1.09000 * 117.51298 * 107.47369 * 11 10 9 38 38 H 1.08002 * 120.11094 * 179.72950 * 12 5 4 39 39 H 0.96996 * 119.99627 * 204.82485 * 14 13 12 40 40 H 0.96999 * 120.00425 * 0.02562 * 17 15 14 41 41 H 1.09002 * 109.46856 * 300.00760 * 18 17 15 42 42 H 1.08997 * 109.47026 * 60.00043 * 18 17 15 43 43 H 0.97004 * 120.00227 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5757 1.2066 -0.0005 5 6 4.2807 0.0015 -0.0016 6 6 5.7593 0.0071 -0.0016 7 8 6.3710 -1.0433 -0.0021 8 7 6.4287 1.1768 -0.0011 9 6 7.8937 1.1824 -0.0017 10 6 8.5969 2.1668 0.9349 11 6 8.5954 2.4153 -0.5748 12 6 3.5856 -1.2075 -0.0016 13 6 2.1993 -1.2047 -0.0011 14 7 1.4970 -2.4155 -0.0016 15 6 2.0754 -3.5303 0.4873 16 8 3.1657 -3.4653 1.0215 17 7 1.4453 -4.7172 0.3842 18 6 2.0739 -5.9290 0.9161 19 6 1.1706 -7.1109 0.6746 20 1 0.2231 -6.9731 0.1751 21 6 1.5537 -8.3678 1.0921 22 7 2.7069 -8.5352 1.7016 23 14 0.4338 -9.8327 0.7933 24 1 0.7568 -10.4426 -0.5217 25 1 0.6357 -10.8376 1.8679 26 1 -0.9813 -9.3827 0.7960 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6524 2.1318 -0.0004 31 1 4.1103 2.1450 -0.0009 32 1 5.9406 2.0150 -0.0011 33 1 8.3674 0.2139 -0.1620 34 1 7.9695 2.8107 1.5513 35 1 9.5334 1.8460 1.3912 36 1 9.5308 2.2581 -1.1116 37 1 7.9669 3.2222 -0.9516 38 1 4.1255 -2.1428 -0.0069 39 1 0.5940 -2.4522 -0.3540 40 1 0.5757 -4.7692 -0.0423 41 1 3.0282 -6.0930 0.4156 42 1 2.2407 -5.8116 1.9869 43 1 2.9766 -9.4196 1.9950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487922297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:59 Heat of formation + Delta-G solvation = -12.279719 kcal Electronic energy + Delta-G solvation = -25348.635845 eV Core-core repulsion = 21587.643293 eV Total energy + Delta-G solvation = -3760.992552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69054 -39.73649 -38.33237 -37.15060 -34.79044 -34.23788 -33.12977 -32.41880 -32.32280 -29.67802 -27.65953 -26.90611 -23.70869 -23.17149 -22.71161 -22.13465 -21.68539 -20.49108 -20.25057 -18.35368 -18.19369 -16.80618 -16.43445 -15.95472 -15.49954 -15.29151 -14.97236 -14.85476 -14.69433 -14.46018 -14.19641 -13.93847 -13.78838 -13.59642 -13.06622 -12.93342 -12.54809 -12.30012 -12.00537 -11.95168 -11.88016 -11.77030 -11.55961 -11.44948 -10.97391 -10.92224 -10.82581 -10.35013 -10.30330 -9.95031 -9.42559 -9.40457 -9.00206 -8.76391 -8.73033 -8.13051 -7.73388 -6.16690 -4.24148 0.81063 1.39999 2.74733 2.84043 3.10588 3.24361 3.30791 3.33112 3.52734 3.72580 4.01655 4.30913 4.45778 4.52510 4.64772 4.65708 4.69640 4.84697 4.91730 4.97208 5.18687 5.19405 5.28321 5.37786 5.41604 5.50231 5.60445 5.66010 5.73803 5.82390 5.92348 6.18909 6.27578 6.32516 6.42494 6.56528 6.99722 7.10121 7.34195 7.38403 7.48002 7.52328 7.79297 7.97688 8.16279 8.65618 8.81172 9.15036 9.42565 10.93397 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.002694 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.252703 B =10389.509039 C =12059.525677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.105 4.105 3 C -0.106 4.106 4 C -0.116 4.116 5 C -0.122 4.122 6 C 0.564 3.436 7 O -0.521 6.521 8 N -0.703 5.703 9 C 0.083 3.917 10 C -0.194 4.194 11 C -0.191 4.191 12 C -0.068 4.068 13 C 0.179 3.821 14 N -0.690 5.690 15 C 0.686 3.314 16 O -0.573 6.573 17 N -0.719 5.719 18 C 0.265 3.735 19 C -0.544 4.544 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.883 5.883 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.400 0.600 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.166 0.834 39 H 0.404 0.596 40 H 0.388 0.612 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 25.810 -5.580 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.108 4.108 3 C -0.124 4.124 4 C -0.136 4.136 5 C -0.126 4.126 6 C 0.352 3.648 7 O -0.396 6.396 8 N -0.355 5.355 9 C -0.024 4.024 10 C -0.233 4.233 11 C -0.229 4.229 12 C -0.089 4.089 13 C 0.081 3.919 14 N -0.337 5.337 15 C 0.387 3.613 16 O -0.450 6.450 17 N -0.371 5.371 18 C 0.144 3.856 19 C -0.583 4.583 20 H 0.081 0.919 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.138 0.862 32 H 0.235 0.765 33 H 0.157 0.843 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.184 0.816 39 H 0.240 0.760 40 H 0.221 0.779 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.143 24.735 -4.977 25.321 hybrid contribution -1.615 -0.342 -0.408 1.701 sum 0.528 24.393 -5.385 24.986 Atomic orbital electron populations 1.20766 0.90803 1.03301 1.02431 1.19761 0.96240 0.91656 1.03185 1.20630 0.93563 0.96881 1.01372 1.21051 0.94430 0.96404 1.01749 1.19637 0.92116 0.94072 1.06748 1.18314 0.87378 0.83368 0.75755 1.90828 1.69479 1.31201 1.48109 1.45262 1.05459 1.08717 1.76028 1.21600 0.80314 0.96720 1.03722 1.23431 1.03218 1.03635 0.93031 1.23378 1.03015 0.99983 0.96533 1.21690 0.92505 0.99561 0.95168 1.17306 0.90949 0.84525 0.99081 1.42887 1.18647 1.06787 1.65368 1.16219 0.84728 0.80530 0.79864 1.90904 1.20438 1.84922 1.48738 1.45801 1.22690 1.06728 1.61879 1.19086 0.93686 0.78132 0.94677 1.21187 1.04767 0.92095 1.40231 0.91882 1.24946 0.95380 0.98992 0.94683 1.69978 1.20435 1.23541 1.38094 0.86396 0.80553 0.81820 0.78005 1.20441 1.20984 1.19789 0.90909 0.91412 0.90966 0.85346 0.86174 0.76475 0.84280 0.88503 0.87917 0.87849 0.88534 0.81646 0.76006 0.77910 0.95327 0.95413 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.44 36.00 0.34 -0.61 16 2 C -0.10 -1.18 5.90 -104.36 -0.62 -1.80 16 3 C -0.11 -1.02 9.67 -39.67 -0.38 -1.41 16 4 C -0.12 -1.20 9.54 -39.16 -0.37 -1.57 16 5 C -0.12 -1.75 5.87 -104.99 -0.62 -2.37 16 6 C 0.56 8.52 7.77 -12.32 -0.10 8.42 16 7 O -0.52 -10.27 15.91 5.32 0.08 -10.19 16 8 N -0.70 -7.44 5.52 -54.75 -0.30 -7.75 16 9 C 0.08 0.81 6.43 -67.93 -0.44 0.37 16 10 C -0.19 -1.44 10.46 -26.73 -0.28 -1.72 16 11 C -0.19 -1.29 10.46 -26.73 -0.28 -1.57 16 12 C -0.07 -1.18 8.25 -38.98 -0.32 -1.51 16 13 C 0.18 2.69 6.41 -83.73 -0.54 2.16 16 14 N -0.69 -10.55 4.98 -14.26 -0.07 -10.62 16 15 C 0.69 14.14 8.36 -86.93 -0.73 13.41 16 16 O -0.57 -14.31 13.51 5.29 0.07 -14.24 16 17 N -0.72 -15.12 5.55 -66.41 -0.37 -15.49 16 18 C 0.26 7.06 5.43 -5.19 -0.03 7.03 16 19 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 20 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.88 -26.20 13.29 55.43 0.74 -25.47 16 23 Si 0.91 20.86 29.54 -169.99 -5.02 15.83 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.57 6.97 -51.93 -0.36 0.21 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.12 0.81 6.40 -52.49 -0.34 0.47 16 32 H 0.40 2.94 6.86 -40.82 -0.28 2.66 16 33 H 0.14 1.62 7.40 -51.93 -0.38 1.24 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.17 3.59 5.39 -52.49 -0.28 3.31 16 39 H 0.40 4.65 7.40 -40.82 -0.30 4.35 16 40 H 0.39 6.81 8.34 -40.82 -0.34 6.47 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -35.81 366.13 -9.75 -45.56 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.62 Total: 11.36 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -4.77 Total: 5.48 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.01 Total: -59.33 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.16 Total: -24.43 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.81 -9.75 -45.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487922297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.280 kcal (2) G-P(sol) polarization free energy of solvation -35.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds