Wall clock time and date at job start Tue Mar 31 2020 11:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38186 * 119.96299 * 2 1 4 4 C 1.38132 * 120.14195 * 180.02562 * 3 2 1 5 5 C 1.38946 * 120.06565 * 359.97438 * 4 3 2 6 6 N 1.39930 * 120.03316 * 180.02562 * 5 4 3 7 7 C 1.34773 * 119.99783 * 325.31592 * 6 5 4 8 8 O 1.21288 * 120.00468 * 354.47116 * 7 6 5 9 9 C 1.50708 * 119.99861 * 174.47648 * 7 6 5 10 10 C 1.53002 * 117.49685 * 248.62141 * 9 7 6 11 11 C 1.52995 * 59.99934 * 252.51044 * 10 9 7 12 12 C 1.38727 * 119.93041 * 359.97438 * 5 4 3 13 13 C 1.38761 * 119.85999 * 359.97438 * 12 5 4 14 14 N 1.39941 * 120.03212 * 179.97438 * 13 12 5 15 15 C 1.34774 * 120.00099 * 34.24164 * 14 13 12 16 16 O 1.21587 * 120.00046 * 5.52324 * 15 14 13 17 17 N 1.34776 * 120.00269 * 185.52124 * 15 14 13 18 18 C 1.46503 * 120.00357 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47109 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00490 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00040 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99790 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00461 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47018 * 59.99709 * 23 21 19 25 25 H 1.48496 * 109.47154 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46806 * 300.00232 * 23 21 19 27 27 H 1.09005 * 109.46694 * 90.00479 * 1 2 3 28 28 H 1.08993 * 109.46937 * 209.99910 * 1 2 3 29 29 H 1.08993 * 109.47501 * 330.00425 * 1 2 3 30 30 H 1.08009 * 119.92807 * 0.02562 * 3 2 1 31 31 H 1.08004 * 119.96832 * 179.97438 * 4 3 2 32 32 H 0.96994 * 119.99833 * 145.31347 * 6 5 4 33 33 H 1.08997 * 115.54823 * 34.32335 * 9 7 6 34 34 H 1.08999 * 117.49818 * 0.02562 * 10 9 7 35 35 H 1.08995 * 117.49676 * 145.01507 * 10 9 7 36 36 H 1.09001 * 117.49741 * 252.51480 * 11 10 9 37 37 H 1.09000 * 117.52147 * 107.48448 * 11 10 9 38 38 H 1.08000 * 120.06885 * 179.72015 * 12 5 4 39 39 H 0.96997 * 120.00052 * 214.24201 * 14 13 12 40 40 H 0.97004 * 120.00208 * 359.97438 * 17 15 14 41 41 H 1.08998 * 109.46762 * 299.99799 * 18 17 15 42 42 H 1.08993 * 109.47361 * 59.99572 * 18 17 15 43 43 H 0.96996 * 120.00156 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5785 1.2015 -0.0005 5 6 4.2784 0.0012 -0.0005 6 7 5.6777 0.0063 -0.0005 7 6 6.3479 0.9686 -0.6647 8 8 5.7428 1.7705 -1.3443 9 6 7.8495 1.0481 -0.5632 10 6 8.4447 2.2437 0.1835 11 6 8.5520 2.1630 -1.3406 12 6 3.5884 -1.2024 0.0005 13 6 2.2008 -1.2032 0.0021 14 7 1.5012 -2.4152 0.0027 15 6 2.0006 -3.4813 0.6586 16 8 3.0060 -3.3643 1.3324 17 7 1.3857 -4.6772 0.5678 18 6 1.9283 -5.8360 1.2812 19 6 1.0624 -7.0403 1.0152 20 1 0.1944 -6.9514 0.3788 21 6 1.3782 -8.2558 1.5844 22 7 2.4355 -8.3642 2.3591 23 14 0.3044 -9.7485 1.2554 24 1 0.2816 -10.0301 -0.2025 25 1 0.8552 -10.9233 1.9775 26 1 -1.0769 -9.4786 1.7290 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8899 0.5137 30 1 1.6554 2.1315 0.0004 31 1 4.1151 2.1388 -0.0010 32 1 6.1652 -0.6826 0.4775 33 1 8.3660 0.0923 -0.4764 34 1 7.7502 2.9724 0.6015 35 1 9.3529 2.0744 0.7617 36 1 9.5311 1.9406 -1.7650 37 1 7.9284 2.8386 -1.9259 38 1 4.1301 -2.1367 -0.0040 39 1 0.6567 -2.4879 -0.4690 40 1 0.5834 -4.7705 0.0306 41 1 2.9423 -6.0343 0.9340 42 1 1.9447 -5.6290 2.3512 43 1 2.6579 -9.2194 2.7592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488401882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:01 Heat of formation + Delta-G solvation = -15.475936 kcal Electronic energy + Delta-G solvation = -25355.315737 eV Core-core repulsion = 21594.184587 eV Total energy + Delta-G solvation = -3761.131150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85198 -40.00589 -38.42514 -36.61089 -35.33338 -34.37136 -33.87346 -32.38350 -31.59075 -29.61696 -27.29252 -26.68301 -24.41147 -23.49945 -22.78577 -22.27196 -21.27968 -20.50774 -19.87075 -18.41870 -17.94391 -17.72971 -16.13903 -15.96784 -15.60459 -15.36957 -15.10271 -14.91419 -14.80403 -14.54365 -14.19501 -13.88954 -13.67536 -13.44725 -13.10969 -12.89079 -12.53049 -12.24818 -12.02662 -11.94817 -11.91348 -11.66878 -11.31836 -11.02743 -10.99712 -10.92988 -10.88878 -10.52269 -10.35028 -10.05003 -9.79804 -9.51308 -9.45220 -8.78924 -8.24683 -8.01282 -7.63220 -6.20608 -4.27741 1.26652 1.53121 2.28882 2.81693 3.17366 3.22815 3.28202 3.30602 3.49440 3.64193 4.01173 4.28402 4.32914 4.43559 4.52636 4.78611 4.87850 4.94565 5.01184 5.15679 5.23247 5.24170 5.36281 5.42515 5.50642 5.57386 5.58843 5.71920 5.77542 5.82549 5.94018 6.29453 6.33023 6.46953 6.57070 6.73346 7.01005 7.21188 7.29089 7.36196 7.45892 7.47717 7.78716 7.94829 7.96234 8.64449 8.79610 9.15220 9.39454 10.89510 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.002571 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.532652 B =10888.011812 C =12319.224767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.136 4.136 3 C -0.084 4.084 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.666 5.666 7 C 0.543 3.457 8 O -0.523 6.523 9 C -0.197 4.197 10 C -0.151 4.151 11 C -0.146 4.146 12 C -0.141 4.141 13 C 0.201 3.799 14 N -0.693 5.693 15 C 0.690 3.310 16 O -0.583 6.583 17 N -0.722 5.722 18 C 0.267 3.733 19 C -0.545 4.545 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.905 3.095 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.414 0.586 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.141 0.859 39 H 0.404 0.596 40 H 0.389 0.611 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.225 20.448 -6.037 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.103 4.103 4 C -0.161 4.161 5 C 0.063 3.937 6 N -0.310 5.310 7 C 0.331 3.669 8 O -0.399 6.399 9 C -0.218 4.218 10 C -0.188 4.188 11 C -0.184 4.184 12 C -0.164 4.164 13 C 0.104 3.896 14 N -0.341 5.341 15 C 0.391 3.609 16 O -0.461 6.461 17 N -0.373 5.373 18 C 0.146 3.854 19 C -0.583 4.583 20 H 0.081 0.919 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.200 1.200 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.250 0.750 33 H 0.145 0.855 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.159 0.841 39 H 0.239 0.761 40 H 0.221 0.779 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.876 20.831 -5.750 22.395 hybrid contribution -1.025 -1.551 -0.286 1.881 sum 4.851 19.280 -6.036 20.777 Atomic orbital electron populations 1.20672 0.91056 1.02952 1.01982 1.19631 0.96102 0.91673 1.06520 1.20605 0.93288 0.96799 0.99591 1.20910 0.94047 0.97036 1.04149 1.17441 0.82085 0.93577 1.00641 1.43431 1.05001 1.30513 1.52065 1.19782 0.88549 0.80364 0.78204 1.90709 1.69677 1.40627 1.38875 1.22175 0.91946 0.97194 1.10457 1.22963 1.02577 0.97856 0.95415 1.22971 1.01519 0.99448 0.94443 1.20876 0.93161 0.97609 1.04734 1.16982 0.90286 0.84277 0.98088 1.42826 1.25885 1.09366 1.56043 1.16164 0.83872 0.80571 0.80340 1.90883 1.26448 1.83990 1.44741 1.45791 1.30459 1.08307 1.52782 1.19040 0.94671 0.79759 0.91943 1.21169 1.11902 0.93722 1.31499 0.91918 1.24941 0.95357 0.98993 0.94669 1.69963 1.25471 1.25865 1.30931 0.86453 0.80363 0.81493 0.78473 1.20061 1.21040 1.20046 0.91457 0.91654 0.91379 0.85633 0.85370 0.74990 0.85479 0.88152 0.87563 0.87768 0.87314 0.84117 0.76095 0.77901 0.95529 0.95519 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.47 36.01 0.34 -0.75 16 2 C -0.14 -1.76 5.90 -104.40 -0.62 -2.38 16 3 C -0.08 -1.04 9.68 -39.64 -0.38 -1.43 16 4 C -0.14 -1.95 8.65 -39.36 -0.34 -2.29 16 5 C 0.16 2.28 6.25 -83.72 -0.52 1.76 16 6 N -0.67 -8.05 5.34 -9.88 -0.05 -8.11 16 7 C 0.54 6.50 7.34 -10.98 -0.08 6.42 16 8 O -0.52 -7.85 14.05 5.55 0.08 -7.78 16 9 C -0.20 -1.64 6.19 -91.77 -0.57 -2.21 16 10 C -0.15 -1.03 10.23 -26.73 -0.27 -1.30 16 11 C -0.15 -1.08 10.04 -26.73 -0.27 -1.35 16 12 C -0.14 -2.29 8.56 -39.21 -0.34 -2.62 16 13 C 0.20 3.10 6.24 -83.72 -0.52 2.58 16 14 N -0.69 -10.66 4.76 -14.25 -0.07 -10.73 16 15 C 0.69 13.82 8.29 -86.92 -0.72 13.10 16 16 O -0.58 -13.79 14.11 5.29 0.07 -13.71 16 17 N -0.72 -14.87 5.55 -66.42 -0.37 -15.23 16 18 C 0.27 6.92 5.43 -5.19 -0.03 6.89 16 19 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 16 20 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 23 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.66 7.15 -51.93 -0.37 0.29 16 29 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.13 1.76 6.52 -52.48 -0.34 1.42 16 32 H 0.41 4.12 8.82 -40.82 -0.36 3.76 16 33 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 0.96 7.67 -51.93 -0.40 0.56 16 38 H 0.14 2.53 6.50 -52.49 -0.34 2.18 16 39 H 0.40 4.84 7.83 -40.82 -0.32 4.52 16 40 H 0.39 6.76 8.34 -40.82 -0.34 6.42 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -33.99 366.83 -9.64 -43.63 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.81 Total: 12.54 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -4.74 Total: 3.28 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.25 Total: -59.00 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.15 Total: -21.49 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.99 -9.64 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488401882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.151 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds