Wall clock time and date at job start Tue Mar 31 2020 11:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38186 * 119.96299 * 2 1 4 4 C 1.38132 * 120.14195 * 180.02562 * 3 2 1 5 5 C 1.38946 * 120.06565 * 359.97438 * 4 3 2 6 6 N 1.39930 * 120.03316 * 180.02562 * 5 4 3 7 7 C 1.34773 * 119.99783 * 325.31592 * 6 5 4 8 8 O 1.21288 * 120.00468 * 354.47116 * 7 6 5 9 9 C 1.50708 * 119.99861 * 174.47648 * 7 6 5 10 10 C 1.53002 * 117.49685 * 248.62141 * 9 7 6 11 11 C 1.52995 * 59.99934 * 252.51044 * 10 9 7 12 12 C 1.38727 * 119.93041 * 359.97438 * 5 4 3 13 13 C 1.38761 * 119.85999 * 359.97438 * 12 5 4 14 14 N 1.39941 * 120.03212 * 179.97438 * 13 12 5 15 15 C 1.34774 * 120.00099 * 34.24164 * 14 13 12 16 16 O 1.21587 * 120.00046 * 5.52324 * 15 14 13 17 17 N 1.34776 * 120.00269 * 185.52124 * 15 14 13 18 18 C 1.46503 * 120.00357 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47109 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00490 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00040 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99790 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00461 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47018 * 59.99709 * 23 21 19 25 25 H 1.48496 * 109.47154 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46806 * 300.00232 * 23 21 19 27 27 H 1.09005 * 109.46694 * 90.00479 * 1 2 3 28 28 H 1.08993 * 109.46937 * 209.99910 * 1 2 3 29 29 H 1.08993 * 109.47501 * 330.00425 * 1 2 3 30 30 H 1.08009 * 119.92807 * 0.02562 * 3 2 1 31 31 H 1.08004 * 119.96832 * 179.97438 * 4 3 2 32 32 H 0.96994 * 119.99833 * 145.31347 * 6 5 4 33 33 H 1.08997 * 115.54823 * 34.32335 * 9 7 6 34 34 H 1.08999 * 117.49818 * 0.02562 * 10 9 7 35 35 H 1.08995 * 117.49676 * 145.01507 * 10 9 7 36 36 H 1.09001 * 117.49741 * 252.51480 * 11 10 9 37 37 H 1.09000 * 117.52147 * 107.48448 * 11 10 9 38 38 H 1.08000 * 120.06885 * 179.72015 * 12 5 4 39 39 H 0.96997 * 120.00052 * 214.24201 * 14 13 12 40 40 H 0.97004 * 120.00208 * 359.97438 * 17 15 14 41 41 H 1.08998 * 109.46762 * 299.99799 * 18 17 15 42 42 H 1.08993 * 109.47361 * 59.99572 * 18 17 15 43 43 H 0.96996 * 120.00156 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5785 1.2015 -0.0005 5 6 4.2784 0.0012 -0.0005 6 7 5.6777 0.0063 -0.0005 7 6 6.3479 0.9686 -0.6647 8 8 5.7428 1.7705 -1.3443 9 6 7.8495 1.0481 -0.5632 10 6 8.4447 2.2437 0.1835 11 6 8.5520 2.1630 -1.3406 12 6 3.5884 -1.2024 0.0005 13 6 2.2008 -1.2032 0.0021 14 7 1.5012 -2.4152 0.0027 15 6 2.0006 -3.4813 0.6586 16 8 3.0060 -3.3643 1.3324 17 7 1.3857 -4.6772 0.5678 18 6 1.9283 -5.8360 1.2812 19 6 1.0624 -7.0403 1.0152 20 1 0.1944 -6.9514 0.3788 21 6 1.3782 -8.2558 1.5844 22 7 2.4355 -8.3642 2.3591 23 14 0.3044 -9.7485 1.2554 24 1 0.2816 -10.0301 -0.2025 25 1 0.8552 -10.9233 1.9775 26 1 -1.0769 -9.4786 1.7290 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8899 0.5137 30 1 1.6554 2.1315 0.0004 31 1 4.1151 2.1388 -0.0010 32 1 6.1652 -0.6826 0.4775 33 1 8.3660 0.0923 -0.4764 34 1 7.7502 2.9724 0.6015 35 1 9.3529 2.0744 0.7617 36 1 9.5311 1.9406 -1.7650 37 1 7.9284 2.8386 -1.9259 38 1 4.1301 -2.1367 -0.0040 39 1 0.6567 -2.4879 -0.4690 40 1 0.5834 -4.7705 0.0306 41 1 2.9423 -6.0343 0.9340 42 1 1.9447 -5.6290 2.3512 43 1 2.6579 -9.2194 2.7592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488401882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:00 Heat of formation + Delta-G solvation = -38.927707 kcal Electronic energy + Delta-G solvation = -25356.332682 eV Core-core repulsion = 21594.184587 eV Total energy + Delta-G solvation = -3762.148096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.98400 -41.26931 -39.67893 -37.41370 -36.46676 -36.16291 -35.22831 -34.34065 -32.58233 -30.93328 -29.05411 -27.76625 -25.34069 -25.06420 -23.83864 -23.33673 -22.29509 -21.99370 -20.98829 -19.92985 -19.20441 -18.60938 -18.02822 -17.23350 -16.86581 -16.58900 -16.41503 -16.36217 -15.86464 -15.76151 -15.28335 -15.23602 -14.99371 -14.60638 -14.49334 -14.04221 -14.00051 -13.65819 -13.41619 -13.09037 -12.93162 -12.69901 -12.66815 -12.45295 -12.39852 -12.23093 -11.74784 -11.59720 -11.51071 -11.50445 -11.28904 -11.06634 -10.83425 -10.79910 -9.93705 -9.35936 -8.82507 -8.28982 -6.45290 0.18488 0.35691 1.36723 1.43760 1.47855 1.55490 1.68595 1.96229 2.09875 2.38963 2.78571 2.89676 3.06307 3.38490 3.56124 3.79070 3.90263 3.95401 4.03007 4.15792 4.18696 4.34265 4.46294 4.60292 4.72721 4.80954 4.87148 4.87476 4.99612 5.03359 5.10704 5.20411 5.22260 5.25242 5.35834 5.37464 5.44217 5.46230 5.56179 5.64972 5.82273 6.05737 6.15937 6.34081 6.65236 7.00941 7.14446 7.24903 7.57261 8.82955 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.002571 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.532652 B =10888.011812 C =12319.224767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.127 4.127 3 C -0.079 4.079 4 C -0.145 4.145 5 C 0.146 3.854 6 N -0.664 5.664 7 C 0.539 3.461 8 O -0.558 6.558 9 C -0.207 4.207 10 C -0.138 4.138 11 C -0.146 4.146 12 C -0.162 4.162 13 C 0.175 3.825 14 N -0.670 5.670 15 C 0.692 3.308 16 O -0.624 6.624 17 N -0.715 5.715 18 C 0.286 3.714 19 C -0.556 4.556 20 H 0.084 0.916 21 C 0.005 3.995 22 N -0.930 5.930 23 Si 0.984 3.016 24 H -0.263 1.263 25 H -0.286 1.286 26 H -0.262 1.262 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.160 0.840 31 H 0.129 0.871 32 H 0.421 0.579 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.422 0.578 40 H 0.407 0.593 41 H -0.011 1.011 42 H -0.011 1.011 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 21.331 -6.954 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.130 4.130 3 C -0.097 4.097 4 C -0.166 4.166 5 C 0.052 3.948 6 N -0.309 5.309 7 C 0.329 3.671 8 O -0.437 6.437 9 C -0.228 4.228 10 C -0.175 4.175 11 C -0.183 4.183 12 C -0.185 4.185 13 C 0.078 3.922 14 N -0.320 5.320 15 C 0.392 3.608 16 O -0.504 6.504 17 N -0.368 5.368 18 C 0.163 3.837 19 C -0.594 4.594 20 H 0.102 0.898 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.211 1.211 26 H -0.187 1.187 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.178 0.822 31 H 0.147 0.853 32 H 0.259 0.741 33 H 0.167 0.833 34 H 0.110 0.890 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.109 0.891 38 H 0.132 0.868 39 H 0.261 0.739 40 H 0.243 0.757 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.336 21.761 -6.709 23.181 hybrid contribution -0.508 -1.672 -0.009 1.747 sum 3.828 20.090 -6.718 21.526 Atomic orbital electron populations 1.20771 0.88369 1.03835 1.03607 1.19964 0.97949 0.90528 1.04570 1.21015 0.92803 0.98034 0.97887 1.21091 0.94987 0.96595 1.03956 1.17582 0.83267 0.93349 1.00628 1.43513 1.04351 1.30933 1.52066 1.20457 0.90054 0.79389 0.77156 1.90678 1.70762 1.41857 1.40358 1.22256 0.89369 0.98917 1.12254 1.23082 1.02945 0.96194 0.95281 1.23051 1.02025 0.98372 0.94845 1.20788 0.93918 0.97142 1.06649 1.17257 0.90254 0.84861 0.99798 1.42426 1.26274 1.08186 1.55094 1.16247 0.83244 0.81152 0.80172 1.90859 1.28297 1.84722 1.46541 1.45341 1.31167 1.07437 1.52898 1.18457 0.93351 0.81795 0.90084 1.21564 1.12392 0.93813 1.31650 0.89758 1.26034 0.96671 1.02629 0.94121 1.70126 1.27605 1.26854 1.32225 0.85212 0.78495 0.76753 0.78787 1.18748 1.21147 1.18651 0.89318 0.91936 0.89375 0.82237 0.85345 0.74106 0.83344 0.89021 0.84970 0.85389 0.89126 0.86818 0.73891 0.75745 0.99276 0.99296 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.47 71.24 0.67 -1.13 16 2 C -0.13 -3.06 5.90 -19.72 -0.12 -3.18 16 3 C -0.08 -1.80 9.68 22.23 0.22 -1.59 16 4 C -0.15 -3.98 8.65 22.41 0.19 -3.78 16 5 C 0.15 4.39 6.25 38.13 0.24 4.63 16 6 N -0.66 -16.70 5.34 -303.55 -1.62 -18.32 16 7 C 0.54 13.12 7.34 87.66 0.64 13.76 16 8 O -0.56 -17.11 14.05 -3.05 -0.04 -17.15 16 9 C -0.21 -3.28 6.19 -11.54 -0.07 -3.35 16 10 C -0.14 -1.67 10.23 30.59 0.31 -1.36 16 11 C -0.15 -1.99 10.04 30.59 0.31 -1.68 16 12 C -0.16 -5.49 8.56 22.51 0.19 -5.30 16 13 C 0.17 5.38 6.24 38.13 0.24 5.62 16 14 N -0.67 -20.48 4.76 -317.25 -1.51 -21.99 16 15 C 0.69 28.48 8.29 179.06 1.48 29.96 16 16 O -0.62 -31.14 14.11 -3.99 -0.06 -31.19 16 17 N -0.72 -30.00 5.55 -482.31 -2.68 -32.68 16 18 C 0.29 15.48 5.43 85.63 0.46 15.95 16 19 C -0.56 -29.72 9.28 25.60 0.24 -29.48 16 20 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 21 C 0.01 0.29 5.46 84.65 0.46 0.75 16 22 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 23 Si 0.98 41.66 29.54 68.60 2.03 43.69 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 27 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.06 1.09 7.15 -2.39 -0.02 1.08 16 29 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 30 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.13 3.51 6.52 -2.91 -0.02 3.49 16 32 H 0.42 8.92 8.82 -92.71 -0.82 8.11 16 33 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.59 7.67 -2.39 -0.02 1.57 16 38 H 0.11 4.43 6.50 -2.91 -0.02 4.41 16 39 H 0.42 9.51 7.83 -92.71 -0.73 8.78 16 40 H 0.41 13.86 8.34 -92.71 -0.77 13.08 16 41 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 43 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -77.35 366.83 0.64 -76.71 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -1.24 Total: 36.16 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 5.48 Total: 19.83 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -5.52 Total: -128.04 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.10 Total: -48.35 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -77.35 0.64 -76.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488401882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.784 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds