Wall clock time and date at job start Tue Mar 31 2020 11:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29813 * 126.33695 * 2 1 4 4 O 1.41326 * 109.72707 * 179.97438 * 3 2 1 5 5 C 1.34844 * 109.42152 * 0.02562 * 4 3 2 6 6 N 1.32452 * 133.09914 * 179.97438 * 5 4 3 7 7 C 1.31561 * 122.02457 * 180.02562 * 6 5 4 8 8 C 1.50697 * 119.16741 * 180.02562 * 7 6 5 9 9 C 1.38594 * 121.65913 * 0.27638 * 7 6 5 10 10 C 1.39436 * 119.19957 * 359.48572 * 9 7 6 11 11 C 1.48006 * 121.10621 * 180.25807 * 10 9 7 12 12 O 1.21526 * 119.99916 * 124.73951 * 11 10 9 13 13 N 1.34784 * 119.99971 * 304.74693 * 11 10 9 14 14 C 1.46500 * 119.99932 * 184.08392 * 13 11 10 15 15 C 1.50696 * 109.46842 * 90.00067 * 14 13 11 16 16 H 1.07998 * 120.00505 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99684 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00278 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99906 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46896 * 90.00178 * 19 17 15 21 21 H 1.48499 * 109.47039 * 209.99886 * 19 17 15 22 22 H 1.48498 * 109.47033 * 329.99748 * 19 17 15 23 23 C 1.46502 * 119.99795 * 4.08565 * 13 11 10 24 24 C 1.52998 * 109.47077 * 114.58475 * 23 13 11 25 25 C 1.53002 * 109.46632 * 234.58538 * 23 13 11 26 26 C 1.40522 * 106.85872 * 359.97438 * 5 4 3 27 27 H 1.09000 * 109.47563 * 264.95667 * 1 2 3 28 28 H 1.09001 * 109.46747 * 24.94831 * 1 2 3 29 29 H 1.08998 * 109.47206 * 144.94832 * 1 2 3 30 30 H 1.09004 * 109.47355 * 89.99780 * 8 7 6 31 31 H 1.08998 * 109.47576 * 210.00260 * 8 7 6 32 32 H 1.09000 * 109.47409 * 330.00060 * 8 7 6 33 33 H 1.07997 * 120.39338 * 179.72041 * 9 7 6 34 34 H 1.08999 * 109.46715 * 210.00231 * 14 13 11 35 35 H 1.08995 * 109.47014 * 329.99940 * 14 13 11 36 36 H 0.96992 * 119.99914 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.47433 * 354.58300 * 23 13 11 38 38 H 1.08998 * 109.47309 * 60.00133 * 24 23 13 39 39 H 1.09006 * 109.46656 * 179.97438 * 24 23 13 40 40 H 1.08992 * 109.47134 * 299.99951 * 24 23 13 41 41 H 1.08999 * 109.47373 * 60.00498 * 25 23 13 42 42 H 1.09007 * 109.46649 * 180.02562 * 25 23 13 43 43 H 1.08998 * 109.47330 * 299.99607 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6417 0.0006 5 6 3.6966 -0.7051 0.0004 6 7 4.7070 -1.5616 0.0003 7 6 4.5179 -2.8635 -0.0004 8 6 5.7146 -3.7794 0.0002 9 6 3.2459 -3.4139 -0.0067 10 6 2.1383 -2.5669 -0.0016 11 6 0.7611 -3.1091 -0.0024 12 8 -0.0229 -2.7776 0.8649 13 7 0.3766 -3.9708 -0.9649 14 6 -1.0109 -4.4380 -1.0181 15 6 -1.8220 -3.5057 -1.8805 16 1 -1.3514 -2.6504 -2.3423 17 6 -3.1653 -3.7445 -2.0798 18 7 -3.7384 -4.7863 -1.5179 19 14 -4.1711 -2.5884 -3.1482 20 1 -4.1327 -3.0570 -4.5567 21 1 -5.5770 -2.5705 -2.6706 22 1 -3.6030 -1.2188 -3.0663 23 6 1.3463 -4.4401 -1.9578 24 6 1.5666 -5.9442 -1.7842 25 6 0.8114 -4.1619 -3.3640 26 6 2.3734 -1.1781 0.0003 27 1 -0.3634 -0.0903 1.0237 28 1 -0.3633 0.9318 -0.4335 29 1 -0.3633 -0.8413 -0.5902 30 1 6.0024 -4.0007 1.0280 31 1 5.4627 -4.7068 -0.5143 32 1 6.5445 -3.2934 -0.5128 33 1 3.1144 -4.4858 -0.0117 34 1 -1.0401 -5.4421 -1.4412 35 1 -1.4271 -4.4559 -0.0110 36 1 -4.6834 -4.9541 -1.6578 37 1 2.2918 -3.9159 -1.8184 38 1 0.6211 -6.4684 -1.9237 39 1 2.2877 -6.2934 -2.5233 40 1 1.9475 -6.1423 -0.7824 41 1 0.6545 -3.0904 -3.4877 42 1 1.5327 -4.5115 -4.1028 43 1 -0.1340 -4.6861 -3.5035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522961629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:00 Heat of formation + Delta-G solvation = 42.701258 kcal Electronic energy + Delta-G solvation = -27722.554447 eV Core-core repulsion = 23963.946049 eV Total energy + Delta-G solvation = -3758.608398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.10828 -39.82529 -38.65524 -36.27763 -34.73696 -33.12626 -32.44343 -32.11223 -31.05452 -28.67010 -27.97078 -27.42535 -26.85164 -24.65654 -23.37241 -22.48145 -21.53509 -20.58452 -18.57410 -18.16586 -17.38529 -17.03494 -16.63037 -16.40152 -15.44337 -15.12620 -14.48797 -14.32929 -14.24820 -14.04054 -13.60144 -13.47120 -13.35721 -13.24485 -12.99392 -12.77815 -12.49624 -12.44585 -12.39532 -12.16229 -11.86766 -11.76052 -11.40438 -11.31478 -11.07042 -11.04047 -10.94074 -10.69398 -10.53747 -10.18127 -10.06948 -9.70312 -9.52022 -9.18559 -8.93662 -8.54571 -7.92053 -6.16493 -4.21157 0.21449 0.81116 1.90476 2.05812 2.94594 3.21895 3.27881 3.30224 3.34667 3.54457 3.71156 4.04297 4.30443 4.34097 4.36110 4.55332 4.89088 5.03204 5.08540 5.10754 5.18882 5.30650 5.37915 5.44628 5.51770 5.56285 5.65732 5.67874 5.75335 5.78963 5.86573 5.99211 6.10128 6.14401 6.24454 6.34269 6.45913 6.82885 6.88724 7.04034 7.25864 7.33201 7.50553 7.78513 8.07915 8.11257 8.60171 8.83839 9.43766 10.91611 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.005225 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.618973 B = 5357.955802 C = 6618.541138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.165 3.835 3 N -0.285 5.285 4 O -0.087 6.087 5 C 0.296 3.704 6 N -0.479 5.479 7 C 0.199 3.801 8 C -0.106 4.106 9 C -0.186 4.186 10 C 0.025 3.975 11 C 0.543 3.457 12 O -0.518 6.518 13 N -0.574 5.574 14 C 0.245 3.755 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.892 5.892 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.120 3.880 24 C -0.162 4.162 25 C -0.155 4.155 26 C -0.220 4.220 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.155 0.845 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.791 -0.983 0.029 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.015 4.015 3 N -0.034 5.034 4 O -0.090 6.090 5 C 0.113 3.887 6 N -0.201 5.201 7 C 0.056 3.944 8 C -0.163 4.163 9 C -0.207 4.207 10 C 0.012 3.988 11 C 0.327 3.673 12 O -0.395 6.395 13 N -0.305 5.305 14 C 0.127 3.873 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.016 3.984 24 C -0.220 4.220 25 C -0.212 4.212 26 C -0.226 4.226 27 H 0.122 0.878 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.173 0.827 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.132 0.838 0.490 15.163 hybrid contribution -1.484 -0.414 -0.647 1.671 sum 13.649 0.424 -0.157 13.656 Atomic orbital electron populations 1.20669 0.83122 1.05181 1.05810 1.24640 0.98734 0.88740 0.89393 1.80086 0.83867 1.17052 1.22375 1.89222 1.23714 1.14802 1.81250 1.20290 0.89147 0.86496 0.92736 1.66316 1.32900 1.02313 1.18582 1.21306 0.94875 0.88269 0.89908 1.20850 0.94308 0.97102 1.04029 1.22138 0.91344 1.01626 1.05573 1.20320 0.96146 0.91155 0.91158 1.17946 0.85352 0.80591 0.83423 1.90806 1.52615 1.59189 1.36853 1.48362 1.13036 1.42679 1.26448 1.19373 0.73773 0.95180 0.98980 1.21356 0.93870 1.11046 1.30132 0.92313 1.24894 0.97539 0.95421 0.95932 1.69916 1.12050 1.27500 1.43542 0.86568 0.79600 0.81305 0.80420 1.20625 1.21079 1.19823 1.21301 0.92132 0.95044 0.89967 1.22185 1.02841 0.95751 1.01254 1.22101 1.02373 1.02660 0.94106 1.21221 0.93291 0.94386 1.13751 0.87781 0.89759 0.87724 0.89339 0.89515 0.89645 0.82706 0.94319 0.93531 0.92610 0.90301 0.91126 0.91827 0.92829 0.92598 0.93050 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.08 36.01 0.33 -1.12 16 2 C 0.17 2.81 7.46 -80.23 -0.60 2.22 16 3 N -0.29 -4.93 12.81 34.84 0.45 -4.49 16 4 O -0.09 -1.54 12.06 7.63 0.09 -1.45 16 5 C 0.30 4.96 8.64 -16.42 -0.14 4.82 16 6 N -0.48 -7.10 10.25 -9.24 -0.09 -7.20 16 7 C 0.20 2.36 6.78 -82.58 -0.56 1.80 16 8 C -0.11 -0.76 10.15 36.00 0.37 -0.39 16 9 C -0.19 -2.36 7.16 -39.00 -0.28 -2.64 16 10 C 0.03 0.42 4.87 -104.46 -0.51 -0.09 16 11 C 0.54 10.42 6.08 -12.25 -0.07 10.34 16 12 O -0.52 -11.63 15.02 5.34 0.08 -11.55 16 13 N -0.57 -10.83 2.38 -168.52 -0.40 -11.24 16 14 C 0.25 5.69 4.48 -5.20 -0.02 5.66 16 15 C -0.53 -13.22 7.85 -34.44 -0.27 -13.49 16 16 H 0.06 1.48 7.53 -52.49 -0.40 1.08 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.59 13.29 55.43 0.74 -23.86 16 19 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.12 1.77 2.54 -67.93 -0.17 1.60 16 24 C -0.16 -2.01 9.06 37.16 0.34 -1.67 16 25 C -0.15 -2.38 8.35 37.16 0.31 -2.07 16 26 C -0.22 -3.76 6.19 -104.83 -0.65 -4.41 16 27 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.10 1.92 6.70 -51.93 -0.35 1.58 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.16 1.59 6.55 -52.49 -0.34 1.24 16 34 H 0.04 0.91 6.71 -51.93 -0.35 0.56 16 35 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.08 1.05 4.63 -51.93 -0.24 0.81 16 38 H 0.07 1.01 6.89 -51.93 -0.36 0.65 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.60 7.38 -51.93 -0.38 0.22 16 41 H 0.05 0.93 7.97 -51.93 -0.41 0.52 16 42 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.08 1.48 6.94 -51.93 -0.36 1.12 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -30.32 354.70 -6.52 -36.84 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.66 Total: 0.04 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.04 Total: 2.17 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.69 Total: -46.78 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.17 Total: -12.99 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.32 -6.52 -36.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522961629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.538 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds