Wall clock time and date at job start Tue Mar 31 2020 11:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29813 * 126.33695 * 2 1 4 4 O 1.41326 * 109.72707 * 179.97438 * 3 2 1 5 5 C 1.34844 * 109.42152 * 0.02562 * 4 3 2 6 6 N 1.32452 * 133.09914 * 179.97438 * 5 4 3 7 7 C 1.31561 * 122.02457 * 180.02562 * 6 5 4 8 8 C 1.50697 * 119.16741 * 180.02562 * 7 6 5 9 9 C 1.38594 * 121.65913 * 0.27638 * 7 6 5 10 10 C 1.39436 * 119.19957 * 359.48572 * 9 7 6 11 11 C 1.48006 * 121.10621 * 180.25807 * 10 9 7 12 12 O 1.21526 * 119.99916 * 124.73951 * 11 10 9 13 13 N 1.34784 * 119.99971 * 304.74693 * 11 10 9 14 14 C 1.46500 * 119.99932 * 184.08392 * 13 11 10 15 15 C 1.50696 * 109.46842 * 90.00067 * 14 13 11 16 16 H 1.07998 * 120.00505 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99684 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00278 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99906 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46896 * 90.00178 * 19 17 15 21 21 H 1.48499 * 109.47039 * 209.99886 * 19 17 15 22 22 H 1.48498 * 109.47033 * 329.99748 * 19 17 15 23 23 C 1.46502 * 119.99795 * 4.08565 * 13 11 10 24 24 C 1.52998 * 109.47077 * 114.58475 * 23 13 11 25 25 C 1.53002 * 109.46632 * 234.58538 * 23 13 11 26 26 C 1.40522 * 106.85872 * 359.97438 * 5 4 3 27 27 H 1.09000 * 109.47563 * 264.95667 * 1 2 3 28 28 H 1.09001 * 109.46747 * 24.94831 * 1 2 3 29 29 H 1.08998 * 109.47206 * 144.94832 * 1 2 3 30 30 H 1.09004 * 109.47355 * 89.99780 * 8 7 6 31 31 H 1.08998 * 109.47576 * 210.00260 * 8 7 6 32 32 H 1.09000 * 109.47409 * 330.00060 * 8 7 6 33 33 H 1.07997 * 120.39338 * 179.72041 * 9 7 6 34 34 H 1.08999 * 109.46715 * 210.00231 * 14 13 11 35 35 H 1.08995 * 109.47014 * 329.99940 * 14 13 11 36 36 H 0.96992 * 119.99914 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.47433 * 354.58300 * 23 13 11 38 38 H 1.08998 * 109.47309 * 60.00133 * 24 23 13 39 39 H 1.09006 * 109.46656 * 179.97438 * 24 23 13 40 40 H 1.08992 * 109.47134 * 299.99951 * 24 23 13 41 41 H 1.08999 * 109.47373 * 60.00498 * 25 23 13 42 42 H 1.09007 * 109.46649 * 180.02562 * 25 23 13 43 43 H 1.08998 * 109.47330 * 299.99607 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6417 0.0006 5 6 3.6966 -0.7051 0.0004 6 7 4.7070 -1.5616 0.0003 7 6 4.5179 -2.8635 -0.0004 8 6 5.7146 -3.7794 0.0002 9 6 3.2459 -3.4139 -0.0067 10 6 2.1383 -2.5669 -0.0016 11 6 0.7611 -3.1091 -0.0024 12 8 -0.0229 -2.7776 0.8649 13 7 0.3766 -3.9708 -0.9649 14 6 -1.0109 -4.4380 -1.0181 15 6 -1.8220 -3.5057 -1.8805 16 1 -1.3514 -2.6504 -2.3423 17 6 -3.1653 -3.7445 -2.0798 18 7 -3.7384 -4.7863 -1.5179 19 14 -4.1711 -2.5884 -3.1482 20 1 -4.1327 -3.0570 -4.5567 21 1 -5.5770 -2.5705 -2.6706 22 1 -3.6030 -1.2188 -3.0663 23 6 1.3463 -4.4401 -1.9578 24 6 1.5666 -5.9442 -1.7842 25 6 0.8114 -4.1619 -3.3640 26 6 2.3734 -1.1781 0.0003 27 1 -0.3634 -0.0903 1.0237 28 1 -0.3633 0.9318 -0.4335 29 1 -0.3633 -0.8413 -0.5902 30 1 6.0024 -4.0007 1.0280 31 1 5.4627 -4.7068 -0.5143 32 1 6.5445 -3.2934 -0.5128 33 1 3.1144 -4.4858 -0.0117 34 1 -1.0401 -5.4421 -1.4412 35 1 -1.4271 -4.4559 -0.0110 36 1 -4.6834 -4.9541 -1.6578 37 1 2.2918 -3.9159 -1.8184 38 1 0.6211 -6.4684 -1.9237 39 1 2.2877 -6.2934 -2.5233 40 1 1.9475 -6.1423 -0.7824 41 1 0.6545 -3.0904 -3.4877 42 1 1.5327 -4.5115 -4.1028 43 1 -0.1340 -4.6861 -3.5035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522961629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:59 Heat of formation + Delta-G solvation = 22.573606 kcal Electronic energy + Delta-G solvation = -27723.427247 eV Core-core repulsion = 23963.946049 eV Total energy + Delta-G solvation = -3759.481199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.34650 -41.22182 -39.90009 -37.73763 -36.03996 -34.98731 -33.68283 -33.15729 -32.51588 -29.96368 -29.57721 -28.57962 -27.98757 -26.08794 -24.84556 -23.83092 -22.80036 -21.90666 -19.97050 -19.36750 -18.66152 -18.51238 -18.39599 -17.69181 -17.01007 -16.58327 -16.14346 -15.60268 -15.39393 -15.13830 -14.90527 -14.74753 -14.58596 -14.53584 -14.32237 -14.07648 -13.86164 -13.69193 -13.36924 -13.27525 -13.06002 -13.04970 -12.85383 -12.77459 -12.59772 -12.55427 -12.24947 -12.24313 -12.11695 -11.72949 -11.55248 -11.36838 -10.79248 -10.58447 -10.55061 -10.05685 -9.54337 -8.18660 -6.29240 -0.98169 -0.35224 0.62539 0.84007 1.38253 1.40495 1.47645 1.53383 1.98326 2.28728 2.39735 2.47571 2.82182 3.07725 3.14074 3.26715 3.43717 3.75350 3.92442 3.98300 4.06310 4.24141 4.28301 4.37125 4.41124 4.44647 4.57474 4.81560 4.84923 4.87924 4.88766 4.91422 4.99241 5.02264 5.04073 5.12692 5.24650 5.36570 5.46293 5.51931 5.61654 5.77146 5.81708 6.09811 6.40457 6.57350 6.77067 7.12271 7.40424 8.88819 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.005225 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.618973 B = 5357.955802 C = 6618.541138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.158 3.842 3 N -0.294 5.294 4 O -0.098 6.098 5 C 0.286 3.714 6 N -0.487 5.487 7 C 0.214 3.786 8 C -0.105 4.105 9 C -0.167 4.167 10 C 0.009 3.991 11 C 0.542 3.458 12 O -0.562 6.562 13 N -0.576 5.576 14 C 0.264 3.736 15 C -0.524 4.524 16 H 0.054 0.946 17 C 0.016 3.984 18 N -0.925 5.925 19 Si 0.951 3.049 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.113 3.887 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.242 4.242 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.188 0.812 34 H 0.034 0.966 35 H 0.005 0.995 36 H 0.265 0.735 37 H 0.103 0.897 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.089 0.911 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.706 -2.140 -0.997 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.022 4.022 3 N -0.044 5.044 4 O -0.101 6.101 5 C 0.103 3.897 6 N -0.209 5.209 7 C 0.071 3.929 8 C -0.162 4.162 9 C -0.187 4.187 10 C -0.004 4.004 11 C 0.328 3.672 12 O -0.441 6.441 13 N -0.305 5.305 14 C 0.144 3.856 15 C -0.563 4.563 16 H 0.072 0.928 17 C -0.183 4.183 18 N -0.565 5.565 19 Si 0.776 3.224 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.196 1.196 23 C 0.011 3.989 24 C -0.215 4.215 25 C -0.209 4.209 26 C -0.249 4.249 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.205 0.795 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.064 0.936 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.108 0.892 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.081 -0.321 -0.565 18.093 hybrid contribution -2.258 -0.144 -0.312 2.284 sum 15.823 -0.465 -0.877 15.854 Atomic orbital electron populations 1.20552 0.82987 1.05014 1.05368 1.24759 0.98946 0.89175 0.89310 1.80036 0.83950 1.17255 1.23124 1.89162 1.23740 1.15700 1.81503 1.20477 0.89475 0.86264 0.93438 1.66517 1.32202 1.03310 1.18860 1.22217 0.96262 0.87663 0.86731 1.21131 0.92137 0.97115 1.05819 1.22557 0.90440 1.02704 1.03024 1.20082 0.95230 0.91302 0.93792 1.18349 0.86375 0.79838 0.82595 1.90771 1.54336 1.60452 1.38581 1.48318 1.12158 1.42672 1.27395 1.18808 0.76127 0.94731 0.95959 1.21564 0.94238 1.10847 1.29636 0.92765 1.25629 0.98710 0.96758 0.97190 1.70022 1.12297 1.29127 1.45088 0.85660 0.77925 0.79513 0.79259 1.19507 1.21142 1.19580 1.21668 0.91725 0.97157 0.88343 1.22172 1.02717 0.93080 1.03529 1.22059 1.02082 1.01027 0.95729 1.21304 0.93574 0.94721 1.15277 0.87924 0.87667 0.90424 0.87333 0.86141 0.88922 0.79516 0.94806 0.97711 0.92620 0.87955 0.93638 0.87993 0.91236 0.94581 0.89203 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.73 9.08 71.24 0.65 -2.09 16 2 C 0.16 5.52 7.46 44.94 0.34 5.85 16 3 N -0.29 -10.35 12.81 -43.67 -0.56 -10.91 16 4 O -0.10 -3.47 12.06 29.70 0.36 -3.11 16 5 C 0.29 9.34 8.64 85.16 0.74 10.08 16 6 N -0.49 -13.23 10.25 -296.37 -3.04 -16.27 16 7 C 0.21 4.22 6.78 42.68 0.29 4.51 16 8 C -0.11 -0.91 10.15 71.23 0.72 -0.18 16 9 C -0.17 -3.65 7.16 22.64 0.16 -3.49 16 10 C 0.01 0.28 4.87 -19.76 -0.10 0.18 16 11 C 0.54 21.15 6.08 86.83 0.53 21.68 16 12 O -0.56 -26.43 15.02 -3.80 -0.06 -26.48 16 13 N -0.58 -21.87 2.38 -805.35 -1.92 -23.80 16 14 C 0.26 12.74 4.48 85.63 0.38 13.12 16 15 C -0.52 -27.26 7.85 25.60 0.20 -27.06 16 16 H 0.05 2.81 7.53 -2.91 -0.02 2.79 16 17 C 0.02 0.88 5.46 84.65 0.46 1.34 16 18 N -0.93 -52.57 13.29 21.45 0.28 -52.29 16 19 Si 0.95 42.54 29.54 68.60 2.03 44.57 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.11 3.14 2.54 44.99 0.11 3.25 16 24 C -0.16 -3.38 9.06 71.98 0.65 -2.73 16 25 C -0.15 -4.46 8.35 71.98 0.60 -3.86 16 26 C -0.24 -8.27 6.19 -20.00 -0.12 -8.39 16 27 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 28 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.08 3.03 6.70 -2.39 -0.02 3.01 16 30 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.12 0.33 8.07 -2.39 -0.02 0.31 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.19 2.85 6.55 -2.91 -0.02 2.83 16 34 H 0.03 1.66 6.71 -2.39 -0.02 1.64 16 35 H 0.00 0.27 7.37 -2.39 -0.02 0.25 16 36 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.10 2.37 4.63 -2.39 -0.01 2.36 16 38 H 0.04 1.23 6.89 -2.39 -0.02 1.21 16 39 H 0.10 1.44 8.14 -2.38 -0.02 1.43 16 40 H 0.07 1.28 7.38 -2.39 -0.02 1.26 16 41 H 0.03 1.18 7.97 -2.39 -0.02 1.16 16 42 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.05 1.88 6.94 -2.39 -0.02 1.86 16 Total: -1.00 -70.62 354.70 3.75 -66.87 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.04 Total: 9.20 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 5.61 Total: 12.21 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -5.23 Total: -103.26 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: 0.30 Total: -29.59 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.62 3.75 -66.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522961629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.446 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds