Wall clock time and date at job start Tue Mar 31 2020 11:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34760 * 125.64784 * 2 1 4 4 C 1.40872 * 107.05847 * 179.97438 * 3 2 1 5 5 C 1.36149 * 106.72902 * 0.02562 * 4 3 2 6 6 C 1.47334 * 125.95062 * 179.97438 * 5 4 3 7 7 C 1.37003 * 126.63602 * 179.97438 * 6 5 4 8 8 C 1.41110 * 105.41903 * 179.97438 * 7 6 5 9 9 C 1.47753 * 126.29668 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00293 * 354.06245 * 9 8 7 11 11 N 1.34781 * 119.99720 * 174.06169 * 9 8 7 12 12 C 1.46504 * 119.99820 * 4.35364 * 11 9 8 13 13 C 1.50706 * 109.46993 * 83.42835 * 12 11 9 14 14 H 1.08007 * 119.99691 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99958 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00239 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99961 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47304 * 90.00207 * 17 15 13 19 19 H 1.48500 * 109.46862 * 209.99943 * 17 15 13 20 20 H 1.48498 * 109.46897 * 329.99894 * 17 15 13 21 21 C 1.46494 * 120.00068 * 184.35378 * 11 9 8 22 22 C 1.53005 * 109.47118 * 124.66038 * 21 11 9 23 23 C 1.52998 * 109.47131 * 244.66111 * 21 11 9 24 24 N 1.31846 * 107.39558 * 359.76384 * 8 7 6 25 25 N 1.28439 * 110.51103 * 0.40198 * 24 8 7 26 26 H 0.97001 * 125.02868 * 179.85469 * 25 24 8 27 27 O 1.34330 * 125.64591 * 180.26378 * 2 1 3 28 28 H 1.09004 * 109.46809 * 89.99641 * 1 2 3 29 29 H 1.08996 * 109.47472 * 209.99894 * 1 2 3 30 30 H 1.09006 * 109.47186 * 329.99957 * 1 2 3 31 31 H 1.07998 * 126.47201 * 359.97438 * 3 2 1 32 32 H 1.08007 * 126.63709 * 179.97438 * 4 3 2 33 33 H 1.07998 * 127.28516 * 359.94630 * 7 6 5 34 34 H 1.08997 * 109.46723 * 203.42384 * 12 11 9 35 35 H 1.08995 * 109.47229 * 323.42951 * 12 11 9 36 36 H 0.96993 * 120.00264 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47105 * 4.66082 * 21 11 9 38 38 H 1.09000 * 109.47096 * 60.00039 * 22 21 11 39 39 H 1.09001 * 109.46593 * 180.02562 * 22 21 11 40 40 H 1.09000 * 109.47149 * 300.00055 * 22 21 11 41 41 H 1.08999 * 109.47466 * 60.00255 * 23 21 11 42 42 H 1.09002 * 109.46886 * 179.97438 * 23 21 11 43 43 H 1.09000 * 109.47103 * 299.99973 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0951 0.0000 4 6 3.6276 0.6460 0.0006 5 6 3.5834 -0.7148 0.0004 6 6 4.7474 -1.6180 0.0003 7 6 4.7193 -2.9877 0.0005 8 6 6.0716 -3.3907 -0.0003 9 6 6.5698 -4.7818 -0.0009 10 8 5.7890 -5.7071 0.1081 11 7 7.8899 -5.0247 -0.1225 12 6 8.8397 -3.9098 -0.1580 13 6 9.1612 -3.4788 1.2499 14 1 8.7035 -3.9846 2.0873 15 6 10.0396 -2.4390 1.4689 16 7 10.3206 -2.0632 2.6975 17 14 10.8306 -1.5638 0.0205 18 1 9.9746 -0.4245 -0.3971 19 1 12.1687 -1.0576 0.4188 20 1 10.9775 -2.5136 -1.1115 21 6 8.3751 -6.4036 -0.2191 22 6 9.2150 -6.5610 -1.4883 23 6 9.2341 -6.7289 1.0045 24 7 6.8087 -2.2976 -0.0062 25 7 6.0629 -1.2519 -0.0007 26 1 6.3863 -0.3374 -0.0013 27 8 2.2898 -1.0916 -0.0050 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9608 2.1229 -0.0004 32 1 4.5148 1.2620 0.0004 33 1 3.8468 -3.6242 0.0016 34 1 9.7543 -4.2275 -0.6585 35 1 8.3991 -3.0743 -0.7020 36 1 10.9383 -1.3314 2.8515 37 1 7.5258 -7.0857 -0.2585 38 1 10.0643 -5.8789 -1.4488 39 1 9.5756 -7.5871 -1.5603 40 1 8.6031 -6.3292 -2.3600 41 1 8.6357 -6.6169 1.9087 42 1 9.5947 -7.7551 0.9328 43 1 10.0834 -6.0468 1.0440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523281247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:40 Heat of formation + Delta-G solvation = 64.286434 kcal Electronic energy + Delta-G solvation = -26644.441587 eV Core-core repulsion = 22886.769192 eV Total energy + Delta-G solvation = -3757.672395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.78316 -42.01575 -38.98845 -35.81558 -33.41682 -33.11527 -32.65442 -31.81293 -30.99277 -30.09964 -27.74482 -26.65538 -26.25782 -23.99262 -22.47934 -22.11640 -21.76827 -20.30196 -20.13369 -18.63141 -17.76972 -16.88821 -16.79946 -16.42496 -15.61541 -15.44393 -15.20196 -14.45537 -14.26403 -13.82671 -13.64501 -13.49751 -13.36268 -13.24796 -13.14525 -13.02085 -12.56448 -12.50517 -12.41949 -12.03721 -11.83016 -11.69521 -11.60436 -10.93988 -10.79064 -10.76347 -10.22218 -10.19835 -10.13896 -9.89121 -9.59114 -9.42461 -9.33500 -9.02669 -8.55292 -7.85034 -7.67524 -6.06243 -4.01659 1.06167 2.14590 2.26070 2.33211 2.94537 3.22575 3.30536 3.32892 3.33911 3.80705 4.06239 4.38813 4.39915 4.66766 4.80550 4.89089 5.07014 5.18342 5.26353 5.36209 5.38963 5.46498 5.59717 5.65628 5.72063 5.75004 5.79963 5.98548 5.99570 6.11394 6.16336 6.34282 6.35313 6.39537 6.55857 6.68964 6.72422 6.94839 6.97017 7.04551 7.23263 7.52404 7.63042 8.16338 8.27388 8.54348 8.92593 9.01253 9.55104 11.07160 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.004125 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.137088 B = 6786.763863 C = 8211.777972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.011 4.011 3 C -0.205 4.205 4 C -0.200 4.200 5 C 0.070 3.930 6 C 0.052 3.948 7 C -0.143 4.143 8 C -0.007 4.007 9 C 0.603 3.397 10 O -0.564 6.564 11 N -0.573 5.573 12 C 0.197 3.803 13 C -0.505 4.505 14 H 0.074 0.926 15 C 0.077 3.923 16 N -0.900 5.900 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.267 1.267 21 C 0.136 3.864 22 C -0.160 4.160 23 C -0.154 4.154 24 N -0.172 5.172 25 N -0.373 5.373 26 H 0.444 0.556 27 O -0.160 6.160 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.032 0.968 35 H 0.057 0.943 36 H 0.262 0.738 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 4.348 -8.069 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.062 4.062 3 C -0.224 4.224 4 C -0.220 4.220 5 C 0.018 3.982 6 C -0.071 4.071 7 C -0.171 4.171 8 C -0.166 4.166 9 C 0.390 3.610 10 O -0.443 6.443 11 N -0.303 5.303 12 C 0.076 3.924 13 C -0.544 4.544 14 H 0.092 0.908 15 C -0.125 4.125 16 N -0.540 5.540 17 Si 0.697 3.303 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.191 1.191 21 C 0.033 3.967 22 C -0.218 4.218 23 C -0.212 4.212 24 N -0.008 5.008 25 N -0.090 5.090 26 H 0.289 0.711 27 O -0.055 6.055 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.469 3.970 -7.923 15.297 hybrid contribution 0.123 1.280 -0.441 1.359 sum -12.346 5.250 -8.364 15.810 Atomic orbital electron populations 1.20320 0.84830 1.04196 1.03576 1.22546 0.94014 0.83842 1.05836 1.21423 0.92297 0.99436 1.09231 1.21720 0.98649 0.92898 1.08770 1.18864 0.81203 0.91174 1.06975 1.18214 0.83607 0.92179 1.13074 1.21737 0.97510 0.91921 1.05940 1.21780 0.91103 0.93320 1.10362 1.16837 0.82331 0.85380 0.76459 1.90686 1.56392 1.44072 1.53173 1.47900 1.05736 1.07745 1.68898 1.20196 0.88316 0.84815 0.99096 1.21231 1.25662 1.16441 0.91063 0.90792 1.24742 0.96265 0.96410 0.95053 1.69903 1.35825 1.28782 1.19442 0.86964 0.78900 0.80662 0.83724 1.20307 1.21530 1.19132 1.20937 0.97268 0.83468 0.95051 1.22154 1.00587 1.01723 0.97323 1.22079 1.01134 1.00382 0.97576 1.74386 1.19606 0.92784 1.14057 1.43864 1.01903 1.09585 1.53641 0.71074 1.84025 1.15224 1.34773 1.71487 0.90015 0.90341 0.89259 0.83163 0.83310 0.81925 0.95025 0.92581 0.92838 0.89213 0.91748 0.91951 0.92861 0.92517 0.93092 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.41 36.01 0.37 -0.11 16 2 C -0.01 -0.13 7.31 -35.54 -0.26 -0.39 16 3 C -0.20 -2.17 10.78 -39.82 -0.43 -2.60 16 4 C -0.20 -2.42 10.84 -39.34 -0.43 -2.84 16 5 C 0.07 1.00 7.17 -36.63 -0.26 0.74 16 6 C 0.05 0.86 7.10 -82.51 -0.59 0.27 16 7 C -0.14 -2.61 10.77 -38.94 -0.42 -3.03 16 8 C -0.01 -0.14 6.79 -82.88 -0.56 -0.70 16 9 C 0.60 13.48 7.62 -12.37 -0.09 13.38 16 10 O -0.56 -13.20 16.27 5.31 0.09 -13.11 16 11 N -0.57 -12.34 2.38 -168.61 -0.40 -12.74 16 12 C 0.20 4.51 3.19 -5.19 -0.02 4.50 16 13 C -0.51 -13.42 8.06 -34.44 -0.28 -13.70 16 14 H 0.07 2.24 8.06 -52.48 -0.42 1.82 16 15 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -26.46 13.96 55.43 0.77 -25.69 16 17 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 21 C 0.14 2.53 3.24 -67.93 -0.22 2.31 16 22 C -0.16 -2.48 9.10 37.16 0.34 -2.14 16 23 C -0.15 -2.81 8.92 37.16 0.33 -2.48 16 24 N -0.17 -3.54 8.02 33.36 0.27 -3.27 16 25 N -0.37 -6.23 6.90 33.25 0.23 -6.00 16 26 H 0.44 5.97 8.96 -190.46 -1.71 4.27 16 27 O -0.16 -2.23 10.68 4.44 0.05 -2.18 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16 34 H 0.03 0.72 5.25 -51.93 -0.27 0.44 16 35 H 0.06 1.30 4.74 -51.93 -0.25 1.05 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 1.67 6.93 -51.93 -0.36 1.31 16 38 H 0.06 1.05 6.50 -51.93 -0.34 0.71 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.51 7.29 -51.93 -0.38 1.14 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -32.93 360.40 -7.96 -40.89 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.12 Total: 5.81 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.61 Total: -4.79 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.87 Total: -47.71 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.13 Total: -15.29 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.93 -7.96 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.176 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds