Wall clock time and date at job start Tue Mar 31 2020 11:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34760 * 125.64784 * 2 1 4 4 C 1.40872 * 107.05847 * 179.97438 * 3 2 1 5 5 C 1.36149 * 106.72902 * 0.02562 * 4 3 2 6 6 C 1.47334 * 125.95062 * 179.97438 * 5 4 3 7 7 C 1.37003 * 126.63602 * 179.97438 * 6 5 4 8 8 C 1.41110 * 105.41903 * 179.97438 * 7 6 5 9 9 C 1.47753 * 126.29668 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00293 * 354.06245 * 9 8 7 11 11 N 1.34781 * 119.99720 * 174.06169 * 9 8 7 12 12 C 1.46504 * 119.99820 * 4.35364 * 11 9 8 13 13 C 1.50706 * 109.46993 * 83.42835 * 12 11 9 14 14 H 1.08007 * 119.99691 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99958 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00239 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99961 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47304 * 90.00207 * 17 15 13 19 19 H 1.48500 * 109.46862 * 209.99943 * 17 15 13 20 20 H 1.48498 * 109.46897 * 329.99894 * 17 15 13 21 21 C 1.46494 * 120.00068 * 184.35378 * 11 9 8 22 22 C 1.53005 * 109.47118 * 124.66038 * 21 11 9 23 23 C 1.52998 * 109.47131 * 244.66111 * 21 11 9 24 24 N 1.31846 * 107.39558 * 359.76384 * 8 7 6 25 25 N 1.28439 * 110.51103 * 0.40198 * 24 8 7 26 26 H 0.97001 * 125.02868 * 179.85469 * 25 24 8 27 27 O 1.34330 * 125.64591 * 180.26378 * 2 1 3 28 28 H 1.09004 * 109.46809 * 89.99641 * 1 2 3 29 29 H 1.08996 * 109.47472 * 209.99894 * 1 2 3 30 30 H 1.09006 * 109.47186 * 329.99957 * 1 2 3 31 31 H 1.07998 * 126.47201 * 359.97438 * 3 2 1 32 32 H 1.08007 * 126.63709 * 179.97438 * 4 3 2 33 33 H 1.07998 * 127.28516 * 359.94630 * 7 6 5 34 34 H 1.08997 * 109.46723 * 203.42384 * 12 11 9 35 35 H 1.08995 * 109.47229 * 323.42951 * 12 11 9 36 36 H 0.96993 * 120.00264 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47105 * 4.66082 * 21 11 9 38 38 H 1.09000 * 109.47096 * 60.00039 * 22 21 11 39 39 H 1.09001 * 109.46593 * 180.02562 * 22 21 11 40 40 H 1.09000 * 109.47149 * 300.00055 * 22 21 11 41 41 H 1.08999 * 109.47466 * 60.00255 * 23 21 11 42 42 H 1.09002 * 109.46886 * 179.97438 * 23 21 11 43 43 H 1.09000 * 109.47103 * 299.99973 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0951 0.0000 4 6 3.6276 0.6460 0.0006 5 6 3.5834 -0.7148 0.0004 6 6 4.7474 -1.6180 0.0003 7 6 4.7193 -2.9877 0.0005 8 6 6.0716 -3.3907 -0.0003 9 6 6.5698 -4.7818 -0.0009 10 8 5.7890 -5.7071 0.1081 11 7 7.8899 -5.0247 -0.1225 12 6 8.8397 -3.9098 -0.1580 13 6 9.1612 -3.4788 1.2499 14 1 8.7035 -3.9846 2.0873 15 6 10.0396 -2.4390 1.4689 16 7 10.3206 -2.0632 2.6975 17 14 10.8306 -1.5638 0.0205 18 1 9.9746 -0.4245 -0.3971 19 1 12.1687 -1.0576 0.4188 20 1 10.9775 -2.5136 -1.1115 21 6 8.3751 -6.4036 -0.2191 22 6 9.2150 -6.5610 -1.4883 23 6 9.2341 -6.7289 1.0045 24 7 6.8087 -2.2976 -0.0062 25 7 6.0629 -1.2519 -0.0007 26 1 6.3863 -0.3374 -0.0013 27 8 2.2898 -1.0916 -0.0050 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9608 2.1229 -0.0004 32 1 4.5148 1.2620 0.0004 33 1 3.8468 -3.6242 0.0016 34 1 9.7543 -4.2275 -0.6585 35 1 8.3991 -3.0743 -0.7020 36 1 10.9383 -1.3314 2.8515 37 1 7.5258 -7.0857 -0.2585 38 1 10.0643 -5.8789 -1.4488 39 1 9.5756 -7.5871 -1.5603 40 1 8.6031 -6.3292 -2.3600 41 1 8.6357 -6.6169 1.9087 42 1 9.5947 -7.7551 0.9328 43 1 10.0834 -6.0468 1.0440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523281247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:39 Heat of formation + Delta-G solvation = 43.334343 kcal Electronic energy + Delta-G solvation = -26645.350138 eV Core-core repulsion = 22886.769192 eV Total energy + Delta-G solvation = -3758.580945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.88947 -43.28141 -40.67342 -37.51226 -34.84907 -34.34356 -33.99842 -33.32680 -32.43757 -31.23115 -29.69155 -28.04464 -27.18857 -25.55591 -24.42535 -23.20643 -22.88966 -21.58992 -21.33456 -19.94591 -19.35114 -18.94841 -18.31129 -17.44159 -17.12375 -16.71158 -16.68255 -16.10151 -15.61567 -15.38663 -14.97337 -14.92518 -14.86779 -14.42109 -14.00151 -13.95019 -13.88928 -13.76457 -13.71782 -13.48435 -13.32152 -12.98329 -12.72130 -12.64902 -12.53180 -12.30645 -11.91357 -11.80744 -11.49291 -11.45485 -11.28598 -11.06891 -10.70570 -10.58584 -10.48594 -9.42879 -8.93732 -8.17692 -6.18044 -0.04899 0.61318 1.23461 1.27289 1.39526 1.41843 1.51060 1.81398 2.03382 2.36895 2.41422 2.42290 3.18221 3.30021 3.43361 3.80153 3.93812 3.95773 4.12909 4.24916 4.27625 4.40714 4.48335 4.59472 4.62662 4.73898 4.76748 4.81449 4.82230 4.88054 4.96827 4.98133 5.00878 5.10082 5.16746 5.23396 5.38017 5.46210 5.54144 5.59584 5.74291 5.95733 6.08782 6.27533 6.56295 6.75222 6.86566 7.22463 7.43487 8.99511 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.004125 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.137088 B = 6786.763863 C = 8211.777972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.006 4.006 3 C -0.214 4.214 4 C -0.180 4.180 5 C 0.023 3.977 6 C 0.083 3.917 7 C -0.168 4.168 8 C -0.029 4.029 9 C 0.594 3.406 10 O -0.584 6.584 11 N -0.577 5.577 12 C 0.209 3.791 13 C -0.494 4.494 14 H 0.020 0.980 15 C 0.025 3.975 16 N -0.951 5.951 17 Si 0.932 3.068 18 H -0.260 1.260 19 H -0.292 1.292 20 H -0.245 1.245 21 C 0.126 3.874 22 C -0.150 4.150 23 C -0.145 4.145 24 N -0.205 5.205 25 N -0.361 5.361 26 H 0.458 0.542 27 O -0.181 6.181 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.183 0.817 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.263 0.737 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.089 0.911 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 6.113 -10.278 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 C -0.233 4.233 4 C -0.200 4.200 5 C -0.029 4.029 6 C -0.041 4.041 7 C -0.195 4.195 8 C -0.188 4.188 9 C 0.381 3.619 10 O -0.465 6.465 11 N -0.307 5.307 12 C 0.087 3.913 13 C -0.533 4.533 14 H 0.039 0.961 15 C -0.172 4.172 16 N -0.593 5.593 17 Si 0.756 3.244 18 H -0.185 1.185 19 H -0.218 1.218 20 H -0.169 1.169 21 C 0.023 3.977 22 C -0.208 4.208 23 C -0.203 4.203 24 N -0.042 5.042 25 N -0.080 5.080 26 H 0.306 0.694 27 O -0.077 6.077 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.200 0.800 32 H 0.187 0.813 33 H 0.184 0.816 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.108 0.892 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.412 5.724 -10.150 17.767 hybrid contribution 0.192 0.799 0.341 0.890 sum -13.220 6.523 -9.809 17.707 Atomic orbital electron populations 1.20585 0.81843 1.05569 1.05068 1.23526 0.95704 0.83268 1.03179 1.21846 0.91338 1.00921 1.09146 1.22159 1.00381 0.92044 1.05414 1.18717 0.81015 0.91605 1.11519 1.18335 0.84101 0.91853 1.09838 1.21812 0.96708 0.93065 1.07958 1.21743 0.92325 0.92887 1.11812 1.17180 0.82538 0.86053 0.76123 1.90645 1.56802 1.44868 1.54230 1.48019 1.05399 1.08678 1.68560 1.19978 0.88984 0.85632 0.96702 1.21194 1.24860 1.15827 0.91385 0.96133 1.25518 0.96809 0.97123 0.97779 1.70068 1.37180 1.29869 1.22161 0.85956 0.77720 0.80200 0.80564 1.18498 1.21782 1.16880 1.21235 0.97729 0.81980 0.96735 1.22089 0.99639 1.03674 0.95400 1.21998 0.99703 1.02195 0.96366 1.74206 1.20706 0.93421 1.15845 1.43797 1.01971 1.09597 1.52601 0.69435 1.84015 1.15314 1.36419 1.71983 0.88307 0.90177 0.86665 0.80001 0.81271 0.81553 0.93856 0.91857 0.92843 0.89388 0.92365 0.88659 0.92321 0.95488 0.89216 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.41 71.24 0.74 0.00 16 2 C -0.01 -0.12 7.31 24.89 0.18 0.07 16 3 C -0.21 -3.81 10.78 22.12 0.24 -3.57 16 4 C -0.18 -3.90 10.84 22.43 0.24 -3.66 16 5 C 0.02 0.62 7.17 24.18 0.17 0.80 16 6 C 0.08 2.72 7.10 40.51 0.29 3.01 16 7 C -0.17 -6.33 10.77 22.68 0.24 -6.08 16 8 C -0.03 -1.27 6.79 42.36 0.29 -0.98 16 9 C 0.59 27.57 7.62 86.76 0.66 28.23 16 10 O -0.58 -28.47 16.27 -3.92 -0.06 -28.53 16 11 N -0.58 -25.45 2.38 -805.62 -1.91 -27.37 16 12 C 0.21 9.63 3.19 85.63 0.27 9.91 16 13 C -0.49 -27.17 8.06 25.60 0.21 -26.96 16 14 H 0.02 1.32 8.06 -2.91 -0.02 1.30 16 15 C 0.02 1.36 5.47 84.65 0.46 1.83 16 16 N -0.95 -57.72 13.96 21.44 0.30 -57.42 16 17 Si 0.93 41.39 27.47 68.60 1.88 43.28 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.25 -9.99 6.54 99.48 0.65 -9.34 16 21 C 0.13 4.66 3.24 44.99 0.15 4.81 16 22 C -0.15 -4.38 9.10 71.98 0.66 -3.72 16 23 C -0.14 -5.38 8.92 71.98 0.64 -4.74 16 24 N -0.21 -8.56 8.02 -48.38 -0.39 -8.95 16 25 N -0.36 -12.01 6.90 -48.72 -0.34 -12.35 16 26 H 0.46 11.85 8.96 -220.01 -1.97 9.88 16 27 O -0.18 -4.87 10.68 -7.02 -0.07 -4.94 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.17 5.92 8.06 -2.91 -0.02 5.90 16 34 H 0.04 1.91 5.25 -2.39 -0.01 1.90 16 35 H 0.06 2.90 4.74 -2.39 -0.01 2.89 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.09 3.30 6.93 -2.39 -0.02 3.29 16 38 H 0.06 1.77 6.50 -2.39 -0.02 1.76 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.05 2.22 7.29 -2.39 -0.02 2.20 16 Total: -1.00 -75.42 360.40 3.87 -71.55 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.98 Total: 25.81 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.44 Total: -1.07 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -2.34 Total: -106.09 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.14 Total: -33.48 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.88 Total: 43.28 kcal Total: -75.42 3.87 -71.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.880 kcal (2) G-P(sol) polarization free energy of solvation -75.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds