Wall clock time and date at job start Tue Mar 31 2020 12:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35130 * 125.55064 * 2 1 4 4 C 1.40984 * 108.23904 * 180.24044 * 3 2 1 5 5 N 1.33300 * 126.35515 * 179.73579 * 4 3 2 6 6 C 1.32912 * 120.00261 * 0.02562 * 5 4 3 7 7 O 1.21596 * 119.99540 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00103 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46854 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.47186 * 54.99634 * 9 8 6 11 11 C 1.53006 * 109.47038 * 294.99946 * 9 8 6 12 12 C 1.50703 * 109.46837 * 175.00047 * 9 8 6 13 13 C 1.34505 * 125.78982 * 239.71166 * 12 9 8 14 14 C 1.41384 * 106.84383 * 179.89337 * 13 12 9 15 15 C 1.34513 * 106.83560 * 0.37246 * 14 13 12 16 16 O 1.34303 * 108.42351 * 359.76990 * 15 14 13 17 17 N 1.37279 * 107.28452 * 359.56508 * 4 3 2 18 18 H 0.97007 * 126.34683 * 180.14935 * 17 4 3 19 19 N 1.36330 * 125.55125 * 179.97438 * 2 1 3 20 20 C 1.46502 * 125.86680 * 0.04675 * 19 2 1 21 21 C 1.50697 * 109.46946 * 84.99472 * 20 19 2 22 22 H 1.08003 * 120.00358 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99722 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00202 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00021 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47381 * 89.99609 * 25 23 21 27 27 H 1.48493 * 109.47139 * 209.99789 * 25 23 21 28 28 H 1.48502 * 109.47048 * 329.99864 * 25 23 21 29 29 H 1.09001 * 109.47129 * 90.02808 * 1 2 3 30 30 H 1.09002 * 109.47059 * 210.03110 * 1 2 3 31 31 H 1.09008 * 109.47531 * 330.02900 * 1 2 3 32 32 H 1.08002 * 125.87687 * 359.96896 * 3 2 1 33 33 H 1.09000 * 109.46842 * 300.00295 * 8 6 5 34 34 H 1.08994 * 109.46848 * 60.00137 * 8 6 5 35 35 H 1.08998 * 109.46955 * 59.99793 * 11 9 8 36 36 H 1.08996 * 109.47238 * 180.02562 * 11 9 8 37 37 H 1.09006 * 109.46961 * 300.00354 * 11 9 8 38 38 H 1.08008 * 126.57805 * 0.02562 * 13 12 9 39 39 H 1.07996 * 126.57960 * 180.16727 * 14 13 12 40 40 H 1.08000 * 125.78633 * 179.75394 * 15 14 13 41 41 H 1.08996 * 109.47624 * 204.99803 * 20 19 2 42 42 H 1.09005 * 109.46937 * 324.99775 * 20 19 2 43 43 H 0.97000 * 120.00044 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2926 1.0994 0.0000 4 6 3.6386 0.6799 -0.0056 5 7 4.7124 1.4697 -0.0123 6 6 4.5658 2.7907 -0.0137 7 8 3.4521 3.2788 -0.0084 8 6 5.7799 3.6835 -0.0207 9 6 5.3360 5.1478 -0.0202 10 1 4.6706 5.3255 0.8245 11 6 4.5983 5.4574 -1.3245 12 6 6.5455 6.0392 0.0966 13 6 6.7774 6.9253 1.0816 14 6 8.0198 7.5375 0.7979 15 6 8.4689 6.9947 -0.3480 16 8 7.5718 6.0878 -0.7682 17 7 3.6380 -0.6929 0.0010 18 1 4.4190 -1.2682 0.0014 19 7 2.2996 -1.1092 0.0005 20 6 1.8328 -2.4978 0.0001 21 6 1.5561 -2.9344 -1.4154 22 1 1.7128 -2.2464 -2.2331 23 6 1.1030 -4.2121 -1.6667 24 7 0.9127 -5.0500 -0.6710 25 14 0.7608 -4.7536 -3.4215 26 1 1.9921 -5.3421 -4.0070 27 1 -0.3227 -5.7690 -3.4237 28 1 0.3410 -3.5799 -4.2287 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3634 0.8903 0.5134 32 1 1.9486 2.1232 -0.0005 33 1 6.3811 3.4862 0.8669 34 1 6.3728 3.4835 -0.9131 35 1 3.7236 4.8126 -1.4090 36 1 4.2825 6.5006 -1.3244 37 1 5.2637 5.2796 -2.1693 38 1 6.1381 7.1285 1.9282 39 1 8.5120 8.2976 1.3863 40 1 9.3938 7.2458 -0.8458 41 1 2.5994 -3.1391 0.4349 42 1 0.9186 -2.5740 0.5891 43 1 0.5942 -5.9490 -0.8479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528942284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:21 Heat of formation + Delta-G solvation = 65.778371 kcal Electronic energy + Delta-G solvation = -25407.092078 eV Core-core repulsion = 21649.484378 eV Total energy + Delta-G solvation = -3757.607699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.58463 -40.97842 -38.77719 -35.18306 -34.18131 -33.15180 -32.92379 -32.25634 -30.81475 -28.92936 -27.87090 -27.54924 -26.51627 -23.57862 -22.82326 -21.79738 -21.43960 -19.97685 -19.68608 -18.81710 -17.35737 -17.11301 -16.76214 -15.97161 -15.81061 -15.29254 -15.09079 -14.86308 -14.61264 -14.18586 -13.97139 -13.32895 -12.98657 -12.90460 -12.83668 -12.82558 -12.71418 -12.66365 -12.58554 -12.09488 -12.02349 -11.83504 -11.35960 -11.23794 -11.08684 -11.01615 -10.76098 -10.55237 -10.35059 -9.94480 -9.47702 -9.27820 -8.95408 -8.89147 -8.46779 -8.30059 -6.99945 -6.53377 -4.69060 1.60687 1.73673 2.01414 2.59688 2.93184 3.01130 3.03192 3.11518 3.15233 4.02017 4.17486 4.33740 4.55940 4.77876 4.89120 4.98089 4.98956 5.12565 5.13600 5.29970 5.50119 5.54523 5.76051 5.77657 5.81670 5.82047 5.94136 6.01321 6.05573 6.08083 6.12045 6.19836 6.31102 6.45161 6.48279 6.51099 6.55143 6.57825 6.74203 7.15674 7.34393 7.45367 7.48605 7.61965 7.94702 8.32420 8.40472 9.01567 9.37163 10.49261 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.002249 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.119555 B =12444.779070 C =12675.449857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.189 3.811 3 C -0.333 4.333 4 C 0.471 3.529 5 N -0.704 5.704 6 C 0.496 3.504 7 O -0.586 6.586 8 C -0.108 4.108 9 C 0.003 3.997 10 H 0.105 0.895 11 C -0.150 4.150 12 C 0.010 3.990 13 C -0.221 4.221 14 C -0.214 4.214 15 C -0.053 4.053 16 O -0.172 6.172 17 N -0.466 5.466 18 H 0.445 0.555 19 N -0.338 5.338 20 C 0.253 3.747 21 C -0.556 4.556 22 H 0.069 0.931 23 C 0.071 3.929 24 N -0.886 5.886 25 Si 0.909 3.091 26 H -0.276 1.276 27 H -0.281 1.281 28 H -0.270 1.270 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.184 0.816 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.199 0.801 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 15.193 2.620 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 C -0.365 4.365 4 C 0.222 3.778 5 N -0.468 5.468 6 C 0.282 3.718 7 O -0.469 6.469 8 C -0.148 4.148 9 C -0.015 4.015 10 H 0.123 0.877 11 C -0.207 4.207 12 C -0.040 4.040 13 C -0.240 4.240 14 C -0.233 4.233 15 C -0.120 4.120 16 O -0.068 6.068 17 N -0.188 5.188 18 H 0.292 0.708 19 N -0.124 5.124 20 C 0.137 3.863 21 C -0.594 4.594 22 H 0.087 0.913 23 C -0.135 4.135 24 N -0.523 5.523 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.206 1.206 28 H -0.194 1.194 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.201 0.799 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.216 0.784 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.482 14.404 2.422 15.980 hybrid contribution 0.024 -0.361 -0.699 0.787 sum 6.506 14.044 1.722 15.573 Atomic orbital electron populations 1.20601 0.86299 1.03908 1.04330 1.21389 0.94545 0.85639 0.92242 1.22272 0.91129 1.00290 1.22765 1.19215 0.91757 0.82080 0.84706 1.68726 1.28131 1.05582 1.44410 1.20566 0.88972 0.86437 0.75794 1.90493 1.27339 1.79042 1.50056 1.21266 0.97559 0.91836 1.04170 1.19619 0.89163 0.91277 1.01470 0.87735 1.21951 1.01697 1.01872 0.95194 1.22708 0.90512 1.00491 0.90337 1.21598 0.99219 1.01171 1.02013 1.21793 0.97715 1.04675 0.99100 1.23975 0.95909 0.94133 0.98001 1.84025 1.26991 1.50024 1.45773 1.44557 0.98891 1.05334 1.70002 0.70754 1.47944 0.92791 1.08285 1.63355 1.20060 0.96526 0.70116 0.99615 1.21358 1.47733 0.98761 0.91557 0.91280 1.24948 0.94231 0.95791 0.98485 1.69894 1.43988 1.06917 1.31454 0.86298 0.78374 0.78739 0.83045 1.20184 1.20648 1.19415 0.89100 0.90091 0.89498 0.79861 0.89576 0.89349 0.89238 0.93070 0.93071 0.83640 0.83769 0.78439 0.93070 0.91403 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 10.09 36.00 0.36 -0.91 16 2 C 0.19 3.29 6.93 -81.70 -0.57 2.73 16 3 C -0.33 -6.22 9.41 -39.65 -0.37 -6.59 16 4 C 0.47 9.16 8.07 -155.19 -1.25 7.91 16 5 N -0.70 -13.84 10.51 -11.59 -0.12 -13.96 16 6 C 0.50 9.23 7.42 -11.81 -0.09 9.14 16 7 O -0.59 -11.54 10.87 5.28 0.06 -11.48 16 8 C -0.11 -1.64 5.23 -27.88 -0.15 -1.78 16 9 C 0.00 0.05 2.44 -91.77 -0.22 -0.18 16 10 H 0.10 1.43 7.91 -51.93 -0.41 1.02 16 11 C -0.15 -2.05 8.92 37.16 0.33 -1.72 16 12 C 0.01 0.13 5.83 -35.63 -0.21 -0.08 16 13 C -0.22 -2.62 10.78 -39.70 -0.43 -3.04 16 14 C -0.21 -2.21 10.91 -39.70 -0.43 -2.65 16 15 C -0.05 -0.53 12.09 29.42 0.36 -0.18 16 16 O -0.17 -2.23 10.65 5.71 0.06 -2.17 16 17 N -0.47 -8.44 7.37 31.32 0.23 -8.20 16 18 H 0.45 7.09 8.96 -182.54 -1.64 5.45 16 19 N -0.34 -6.34 3.63 -58.03 -0.21 -6.55 16 20 C 0.25 5.24 5.93 -5.19 -0.03 5.21 16 21 C -0.56 -13.03 9.39 -34.44 -0.32 -13.35 16 22 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 23 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 24 N -0.89 -22.16 13.29 55.43 0.74 -21.42 16 25 Si 0.91 19.03 29.54 -169.99 -5.02 14.01 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.09 7.14 -51.93 -0.37 0.72 16 31 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.18 3.51 5.77 -52.49 -0.30 3.20 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.40 5.95 -51.93 -0.31 1.09 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.41 7.18 -51.93 -0.37 1.04 16 43 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -28.50 366.27 -9.04 -37.54 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.18 Total: 10.60 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -3.12 Total: -3.88 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.63 Total: -50.15 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.12 Total: -13.65 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.50 -9.04 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528942284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.322 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds