Wall clock time and date at job start Tue Mar 31 2020 12:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35130 * 125.55064 * 2 1 4 4 C 1.40984 * 108.23904 * 180.24044 * 3 2 1 5 5 N 1.33300 * 126.35515 * 179.73579 * 4 3 2 6 6 C 1.32912 * 120.00261 * 0.02562 * 5 4 3 7 7 O 1.21596 * 119.99540 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00103 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46854 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.47186 * 54.99634 * 9 8 6 11 11 C 1.53006 * 109.47038 * 294.99946 * 9 8 6 12 12 C 1.50703 * 109.46837 * 175.00047 * 9 8 6 13 13 C 1.34505 * 125.78982 * 239.71166 * 12 9 8 14 14 C 1.41384 * 106.84383 * 179.89337 * 13 12 9 15 15 C 1.34513 * 106.83560 * 0.37246 * 14 13 12 16 16 O 1.34303 * 108.42351 * 359.76990 * 15 14 13 17 17 N 1.37279 * 107.28452 * 359.56508 * 4 3 2 18 18 H 0.97007 * 126.34683 * 180.14935 * 17 4 3 19 19 N 1.36330 * 125.55125 * 179.97438 * 2 1 3 20 20 C 1.46502 * 125.86680 * 0.04675 * 19 2 1 21 21 C 1.50697 * 109.46946 * 84.99472 * 20 19 2 22 22 H 1.08003 * 120.00358 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99722 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00202 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00021 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47381 * 89.99609 * 25 23 21 27 27 H 1.48493 * 109.47139 * 209.99789 * 25 23 21 28 28 H 1.48502 * 109.47048 * 329.99864 * 25 23 21 29 29 H 1.09001 * 109.47129 * 90.02808 * 1 2 3 30 30 H 1.09002 * 109.47059 * 210.03110 * 1 2 3 31 31 H 1.09008 * 109.47531 * 330.02900 * 1 2 3 32 32 H 1.08002 * 125.87687 * 359.96896 * 3 2 1 33 33 H 1.09000 * 109.46842 * 300.00295 * 8 6 5 34 34 H 1.08994 * 109.46848 * 60.00137 * 8 6 5 35 35 H 1.08998 * 109.46955 * 59.99793 * 11 9 8 36 36 H 1.08996 * 109.47238 * 180.02562 * 11 9 8 37 37 H 1.09006 * 109.46961 * 300.00354 * 11 9 8 38 38 H 1.08008 * 126.57805 * 0.02562 * 13 12 9 39 39 H 1.07996 * 126.57960 * 180.16727 * 14 13 12 40 40 H 1.08000 * 125.78633 * 179.75394 * 15 14 13 41 41 H 1.08996 * 109.47624 * 204.99803 * 20 19 2 42 42 H 1.09005 * 109.46937 * 324.99775 * 20 19 2 43 43 H 0.97000 * 120.00044 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2926 1.0994 0.0000 4 6 3.6386 0.6799 -0.0056 5 7 4.7124 1.4697 -0.0123 6 6 4.5658 2.7907 -0.0137 7 8 3.4521 3.2788 -0.0084 8 6 5.7799 3.6835 -0.0207 9 6 5.3360 5.1478 -0.0202 10 1 4.6706 5.3255 0.8245 11 6 4.5983 5.4574 -1.3245 12 6 6.5455 6.0392 0.0966 13 6 6.7774 6.9253 1.0816 14 6 8.0198 7.5375 0.7979 15 6 8.4689 6.9947 -0.3480 16 8 7.5718 6.0878 -0.7682 17 7 3.6380 -0.6929 0.0010 18 1 4.4190 -1.2682 0.0014 19 7 2.2996 -1.1092 0.0005 20 6 1.8328 -2.4978 0.0001 21 6 1.5561 -2.9344 -1.4154 22 1 1.7128 -2.2464 -2.2331 23 6 1.1030 -4.2121 -1.6667 24 7 0.9127 -5.0500 -0.6710 25 14 0.7608 -4.7536 -3.4215 26 1 1.9921 -5.3421 -4.0070 27 1 -0.3227 -5.7690 -3.4237 28 1 0.3410 -3.5799 -4.2287 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3634 0.8903 0.5134 32 1 1.9486 2.1232 -0.0005 33 1 6.3811 3.4862 0.8669 34 1 6.3728 3.4835 -0.9131 35 1 3.7236 4.8126 -1.4090 36 1 4.2825 6.5006 -1.3244 37 1 5.2637 5.2796 -2.1693 38 1 6.1381 7.1285 1.9282 39 1 8.5120 8.2976 1.3863 40 1 9.3938 7.2458 -0.8458 41 1 2.5994 -3.1391 0.4349 42 1 0.9186 -2.5740 0.5891 43 1 0.5942 -5.9490 -0.8479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528942284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:20 Heat of formation + Delta-G solvation = 50.296876 kcal Electronic energy + Delta-G solvation = -25407.763406 eV Core-core repulsion = 21649.484378 eV Total energy + Delta-G solvation = -3758.279027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.45444 -42.44568 -40.19831 -36.45765 -35.71181 -34.73568 -33.79005 -33.67084 -32.41532 -29.97031 -29.08591 -28.82926 -28.07338 -25.10488 -24.11205 -22.85626 -22.57217 -21.16125 -20.91211 -20.18585 -18.91826 -18.46910 -18.08399 -17.13556 -16.93369 -16.77594 -16.55889 -16.31476 -15.86073 -15.66536 -15.07564 -14.63188 -14.42589 -14.32869 -14.08747 -13.99689 -13.81834 -13.66931 -13.65160 -13.47322 -13.28025 -13.16547 -12.90195 -12.74320 -12.42352 -12.27835 -12.15791 -12.00927 -11.86199 -11.07782 -10.79589 -10.79013 -10.71658 -10.32072 -9.81165 -9.32090 -8.60865 -8.28286 -6.56908 0.14662 0.54096 0.87393 1.37271 1.41651 1.47963 1.51120 1.76744 2.17320 2.29615 2.72887 2.87677 2.94037 3.41599 3.67196 3.91075 3.95899 4.12908 4.20037 4.23821 4.27957 4.34662 4.46330 4.66700 4.76403 4.80388 4.82427 4.84828 4.90820 4.93569 4.97514 5.01897 5.09279 5.16848 5.21397 5.23960 5.31715 5.43428 5.50207 5.67887 5.68764 5.99050 6.12925 6.29461 6.41753 6.61674 6.88023 7.16627 7.89427 8.65596 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.002249 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.119555 B =12444.779070 C =12675.449857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.196 3.804 3 C -0.344 4.344 4 C 0.456 3.544 5 N -0.718 5.718 6 C 0.486 3.514 7 O -0.600 6.600 8 C -0.099 4.099 9 C 0.011 3.989 10 H 0.101 0.899 11 C -0.143 4.143 12 C -0.015 4.015 13 C -0.223 4.223 14 C -0.224 4.224 15 C -0.049 4.049 16 O -0.191 6.191 17 N -0.464 5.464 18 H 0.452 0.548 19 N -0.345 5.345 20 C 0.266 3.734 21 C -0.561 4.561 22 H 0.057 0.943 23 C 0.032 3.968 24 N -0.911 5.911 25 Si 0.962 3.038 26 H -0.278 1.278 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.180 0.820 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.236 0.764 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 16.311 2.426 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 C -0.375 4.375 4 C 0.207 3.793 5 N -0.483 5.483 6 C 0.273 3.727 7 O -0.484 6.484 8 C -0.139 4.139 9 C -0.008 4.008 10 H 0.119 0.881 11 C -0.200 4.200 12 C -0.065 4.065 13 C -0.242 4.242 14 C -0.243 4.243 15 C -0.115 4.115 16 O -0.087 6.087 17 N -0.187 5.187 18 H 0.301 0.699 19 N -0.131 5.131 20 C 0.149 3.851 21 C -0.600 4.600 22 H 0.075 0.925 23 C -0.171 4.171 24 N -0.549 5.549 25 Si 0.787 3.213 26 H -0.204 1.204 27 H -0.201 1.201 28 H -0.194 1.194 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.197 0.803 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.174 0.826 39 H 0.187 0.813 40 H 0.252 0.748 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.897 15.534 2.233 17.142 hybrid contribution -0.048 -0.638 -0.618 0.889 sum 6.849 14.896 1.615 16.475 Atomic orbital electron populations 1.20788 0.83562 1.05483 1.05184 1.21953 0.96089 0.84608 0.90438 1.22237 0.91131 1.00441 1.23707 1.19451 0.92292 0.82502 0.85006 1.68803 1.28452 1.06176 1.44833 1.21156 0.89901 0.86456 0.75224 1.90476 1.28184 1.79198 1.50586 1.21222 0.96040 0.92197 1.04426 1.19445 0.89740 0.90448 1.01126 0.88113 1.21854 1.00721 1.02059 0.95411 1.22509 0.90900 1.01662 0.91448 1.21911 0.99962 1.00584 1.01773 1.22145 0.97250 1.05301 0.99600 1.24800 0.96192 0.92598 0.97939 1.84008 1.27467 1.51052 1.46221 1.44555 0.98992 1.05129 1.70006 0.69944 1.47842 0.93268 1.08101 1.63888 1.19746 0.96288 0.70816 0.98238 1.21502 1.47368 0.98653 0.92429 0.92453 1.25573 0.94188 0.95935 1.01357 1.69956 1.44854 1.07238 1.32855 0.85474 0.78083 0.78266 0.79446 1.20364 1.20144 1.19391 0.88383 0.89788 0.86639 0.80295 0.88913 0.89263 0.91470 0.91851 0.93104 0.82628 0.81310 0.74806 0.93986 0.91121 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.37 10.09 71.23 0.72 -1.65 16 2 C 0.20 6.69 6.93 41.14 0.29 6.98 16 3 C -0.34 -12.82 9.41 22.23 0.21 -12.61 16 4 C 0.46 17.87 8.07 133.83 1.08 18.95 16 5 N -0.72 -28.52 10.51 -309.87 -3.26 -31.78 16 6 C 0.49 18.27 7.42 87.95 0.65 18.93 16 7 O -0.60 -23.99 10.87 -4.02 -0.04 -24.03 16 8 C -0.10 -3.00 5.23 29.85 0.16 -2.84 16 9 C 0.01 0.30 2.44 -11.54 -0.03 0.28 16 10 H 0.10 2.77 7.91 -2.39 -0.02 2.75 16 11 C -0.14 -3.92 8.92 71.98 0.64 -3.28 16 12 C -0.02 -0.38 5.83 24.83 0.14 -0.24 16 13 C -0.22 -4.95 10.78 22.19 0.24 -4.72 16 14 C -0.22 -4.09 10.91 22.19 0.24 -3.85 16 15 C -0.05 -0.86 12.09 66.97 0.81 -0.06 16 16 O -0.19 -4.69 10.65 -2.48 -0.03 -4.71 16 17 N -0.46 -16.87 7.37 -54.82 -0.40 -17.28 16 18 H 0.45 14.54 8.96 -213.27 -1.91 12.63 16 19 N -0.34 -12.86 3.63 -337.51 -1.23 -14.08 16 20 C 0.27 10.96 5.93 85.63 0.51 11.47 16 21 C -0.56 -26.07 9.39 25.60 0.24 -25.83 16 22 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 23 C 0.03 1.52 5.46 84.65 0.46 1.98 16 24 N -0.91 -45.18 13.29 21.45 0.28 -44.90 16 25 Si 0.96 38.45 29.54 68.60 2.03 40.47 16 26 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 28 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.08 2.13 7.14 -2.39 -0.02 2.11 16 31 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.18 6.88 5.77 -2.91 -0.02 6.86 16 33 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.07 2.14 5.95 -2.39 -0.01 2.13 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.24 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 2.90 7.18 -2.38 -0.02 2.88 16 43 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 Total: -1.00 -60.10 366.27 2.84 -57.25 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: -0.87 Total: 35.56 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.36 Total: 3.50 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -4.60 Total: -108.04 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.07 Total: -28.75 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.47 kcal Total: -60.10 2.84 -57.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528942284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.551 kcal (2) G-P(sol) polarization free energy of solvation -60.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds