Wall clock time and date at job start Tue Mar 31 2020 12:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38533 * 120.81889 * 2 1 4 4 C 1.38237 * 119.24116 * 179.97438 * 3 2 1 5 5 N 1.31888 * 120.93323 * 0.03015 * 4 3 2 6 6 C 1.31775 * 121.80537 * 359.67693 * 5 4 3 7 7 C 1.38953 * 120.64921 * 0.58296 * 6 5 4 8 8 N 1.39753 * 120.48979 * 179.73117 * 7 6 5 9 9 C 1.34775 * 120.00117 * 332.66204 * 8 7 6 10 10 O 1.21374 * 120.00308 * 1.48561 * 9 8 7 11 11 C 1.49362 * 119.99845 * 181.48425 * 9 8 7 12 12 O 1.21357 * 119.99749 * 353.34793 * 11 9 8 13 13 N 1.34772 * 119.99658 * 173.35495 * 11 9 8 14 14 C 1.46932 * 120.62781 * 171.59006 * 13 11 9 15 15 C 1.53189 * 108.89186 * 126.45742 * 14 13 11 16 16 C 1.53036 * 109.31506 * 54.56623 * 15 14 13 17 17 C 1.50701 * 109.46370 * 178.62720 * 16 15 14 18 18 H 1.07997 * 119.99713 * 0.41867 * 17 16 15 19 19 C 1.37877 * 119.99999 * 180.42084 * 17 16 15 20 20 N 1.31517 * 120.00033 * 7.54124 * 19 17 16 21 21 Si 1.86804 * 119.99740 * 187.53598 * 19 17 16 22 22 H 1.48497 * 109.46828 * 94.99742 * 21 19 17 23 23 H 1.48504 * 109.46695 * 214.99383 * 21 19 17 24 24 H 1.48492 * 109.47098 * 334.99553 * 21 19 17 25 25 C 1.53038 * 109.53868 * 298.63400 * 16 15 14 26 26 C 1.46962 * 120.65905 * 351.40167 * 13 11 9 27 27 H 1.09001 * 109.47323 * 270.01596 * 1 2 3 28 28 H 1.08998 * 109.47377 * 30.01844 * 1 2 3 29 29 H 1.09005 * 109.47224 * 150.02211 * 1 2 3 30 30 H 1.07995 * 120.37681 * 359.96557 * 3 2 1 31 31 H 1.08005 * 119.53234 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.67718 * 180.31894 * 6 5 4 33 33 H 0.97004 * 119.99936 * 152.66671 * 8 7 6 34 34 H 1.08997 * 109.58485 * 6.60124 * 14 13 11 35 35 H 1.09000 * 109.58528 * 246.31979 * 14 13 11 36 36 H 1.09007 * 109.49489 * 174.51423 * 15 14 13 37 37 H 1.08997 * 109.49966 * 294.57691 * 15 14 13 38 38 H 1.09007 * 109.46035 * 58.64978 * 16 15 14 39 39 H 0.97002 * 119.99870 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.50455 * 181.31723 * 25 16 15 41 41 H 1.08999 * 109.49609 * 301.41552 * 25 16 15 42 42 H 1.08997 * 109.46200 * 113.75430 * 26 13 11 43 43 H 1.08999 * 109.70782 * 353.46798 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1897 0.0000 4 6 3.5986 1.1516 0.0005 5 7 4.2451 0.0021 0.0005 6 6 3.6095 -1.1522 0.0062 7 6 2.2207 -1.1961 0.0004 8 7 1.5500 -2.4222 0.0008 9 6 2.1385 -3.5124 -0.5298 10 8 3.2616 -3.4356 -0.9836 11 6 1.4087 -4.8153 -0.5592 12 8 0.3374 -4.9234 0.0006 13 7 1.9400 -5.8707 -1.2073 14 6 1.3310 -7.2031 -1.0934 15 6 1.0583 -7.7456 -2.4998 16 6 2.3535 -7.7144 -3.3144 17 6 2.0967 -8.2789 -4.6879 18 1 1.1072 -8.6190 -4.9555 19 6 3.1249 -8.3611 -5.6027 20 7 4.3572 -8.0878 -5.2334 21 14 2.7676 -8.8611 -7.3668 22 1 2.5963 -7.6446 -8.2010 23 1 3.8997 -9.6660 -7.8920 24 1 1.5232 -9.6701 -7.4097 25 6 2.8440 -6.2702 -3.4406 26 6 3.1369 -5.7108 -2.0449 27 1 -0.3634 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6964 2.1360 -0.0006 31 1 4.1566 2.0764 0.0010 32 1 4.1736 -2.0732 0.0111 33 1 0.6609 -2.4886 0.3830 34 1 0.3938 -7.1304 -0.5417 35 1 2.0127 -7.8728 -0.5691 36 1 0.6971 -8.7718 -2.4301 37 1 0.3055 -7.1274 -2.9887 38 1 3.1132 -8.3132 -2.8118 39 1 5.0805 -8.1453 -5.8771 40 1 3.7537 -6.2460 -4.0405 41 1 2.0748 -5.6654 -3.9208 42 1 3.9678 -6.2575 -1.5991 43 1 3.3937 -4.6542 -2.1212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541040542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:24 Heat of formation + Delta-G solvation = -37.951344 kcal Electronic energy + Delta-G solvation = -26497.260411 eV Core-core repulsion = 22735.154654 eV Total energy + Delta-G solvation = -3762.105757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.58098 -41.24524 -39.80679 -38.66884 -36.78629 -35.34353 -34.38621 -33.07878 -31.83591 -31.31133 -28.89463 -28.35569 -26.54414 -24.82936 -24.22972 -23.55508 -22.85888 -21.75159 -20.65896 -19.13391 -18.67704 -18.43740 -17.73622 -17.48757 -17.23994 -17.07534 -16.49878 -16.19472 -15.63253 -15.46893 -15.06689 -14.91327 -14.82435 -14.65950 -14.45637 -14.06274 -13.94920 -13.78083 -13.66202 -13.37694 -13.23061 -12.83077 -12.66946 -12.54681 -12.45469 -12.20312 -12.15410 -11.98279 -11.54113 -11.12466 -10.97553 -10.55717 -10.43980 -10.35970 -10.19443 -9.76129 -9.41972 -8.11328 -6.21417 -0.27715 0.19549 0.44308 1.05748 1.40014 1.42440 1.51407 1.91617 2.28374 2.43290 2.79085 3.03324 3.17661 3.61325 3.65728 3.76212 3.96865 4.04559 4.17775 4.26736 4.29954 4.44546 4.53859 4.56340 4.60726 4.73230 4.74951 4.83239 4.90182 4.95032 5.10235 5.13412 5.15728 5.17436 5.21632 5.33859 5.39793 5.62733 5.72991 5.80097 5.95706 6.03174 6.16514 6.36026 6.46825 6.70957 6.88993 7.00970 7.45727 8.94882 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.003097 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.571072 B = 9039.790751 C = 9728.259082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.145 4.145 4 C 0.076 3.924 5 N -0.500 5.500 6 C 0.075 3.925 7 C 0.073 3.927 8 N -0.621 5.621 9 C 0.511 3.489 10 O -0.502 6.502 11 C 0.509 3.491 12 O -0.542 6.542 13 N -0.566 5.566 14 C 0.112 3.888 15 C -0.113 4.113 16 C 0.042 3.958 17 C -0.534 4.534 18 H 0.051 0.949 19 C 0.016 3.984 20 N -0.913 5.913 21 Si 0.947 3.053 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.268 1.268 25 C -0.110 4.110 26 C 0.082 3.918 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.179 0.821 31 H 0.186 0.814 32 H 0.158 0.842 33 H 0.432 0.568 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.006 0.994 39 H 0.261 0.739 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.064 0.936 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 18.339 13.179 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.075 4.075 3 C -0.164 4.164 4 C -0.081 4.081 5 N -0.210 5.210 6 C -0.084 4.084 7 C -0.024 4.024 8 N -0.268 5.268 9 C 0.295 3.705 10 O -0.378 6.378 11 C 0.291 3.709 12 O -0.422 6.422 13 N -0.297 5.297 14 C -0.009 4.009 15 C -0.151 4.151 16 C 0.024 3.976 17 C -0.572 4.572 18 H 0.070 0.930 19 C -0.183 4.183 20 N -0.553 5.553 21 Si 0.774 3.226 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.149 4.149 26 C -0.039 4.039 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.196 0.804 31 H 0.203 0.797 32 H 0.175 0.825 33 H 0.273 0.727 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.331 18.233 13.068 23.309 hybrid contribution -0.877 -0.827 -1.139 1.658 sum -7.208 17.407 11.929 22.299 Atomic orbital electron populations 1.20918 0.87535 1.04661 1.04535 1.20544 0.98536 0.90810 0.97568 1.22319 0.94875 0.99124 1.00130 1.23399 0.93024 0.96458 0.95229 1.67754 1.41647 0.98881 1.12732 1.23162 0.90793 0.97279 0.97140 1.18869 0.93025 0.85557 1.04952 1.42947 1.21244 1.05711 1.56863 1.20351 0.86449 0.85534 0.78176 1.90539 1.19205 1.84006 1.44040 1.19735 0.85432 0.84887 0.80834 1.90713 1.20715 1.83914 1.46824 1.48167 1.28881 1.08457 1.44187 1.21901 0.99452 0.81325 0.98235 1.21849 0.98742 1.00492 0.94011 1.18644 0.92524 0.92465 0.93975 1.21543 0.95351 1.41189 0.99154 0.93040 1.25675 0.94892 0.95474 1.02243 1.70032 0.99676 1.50129 1.35418 0.85705 0.77860 0.78164 0.80906 1.20494 1.21029 1.19297 1.21745 1.01040 0.97627 0.94472 1.22813 0.85131 1.05554 0.90407 0.88320 0.88237 0.91611 0.80386 0.79746 0.82526 0.72690 0.88351 0.90073 0.90872 0.93444 0.97625 0.93013 0.91520 0.95280 0.91808 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.54 71.24 0.68 -0.46 16 2 C -0.06 -1.03 5.93 -19.54 -0.12 -1.15 16 3 C -0.14 -1.89 9.81 22.34 0.22 -1.67 16 4 C 0.08 1.31 11.17 84.68 0.95 2.26 16 5 N -0.50 -12.85 10.35 -195.27 -2.02 -14.87 16 6 C 0.07 2.03 9.92 84.87 0.84 2.87 16 7 C 0.07 1.64 6.42 38.30 0.25 1.89 16 8 N -0.62 -14.05 4.96 -304.52 -1.51 -15.57 16 9 C 0.51 14.85 7.61 87.24 0.66 15.52 16 10 O -0.50 -16.64 10.27 -3.32 -0.03 -16.67 16 11 C 0.51 16.24 7.73 87.24 0.67 16.92 16 12 O -0.54 -17.65 15.92 -3.27 -0.05 -17.71 16 13 N -0.57 -19.73 2.98 -820.51 -2.45 -22.17 16 14 C 0.11 3.75 6.44 86.36 0.56 4.31 16 15 C -0.11 -4.44 5.30 30.67 0.16 -4.28 16 16 C 0.04 2.05 2.00 -11.52 -0.02 2.03 16 17 C -0.53 -28.90 8.55 25.60 0.22 -28.68 16 18 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 19 C 0.02 0.89 5.20 84.65 0.44 1.33 16 20 N -0.91 -52.11 11.69 21.45 0.25 -51.86 16 21 Si 0.95 43.37 29.54 68.60 2.03 45.40 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 C -0.11 -5.11 5.16 30.67 0.16 -4.95 16 26 C 0.08 3.17 5.98 86.36 0.52 3.68 16 27 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.58 8.10 -2.39 -0.02 0.56 16 29 H 0.06 0.74 7.15 -2.38 -0.02 0.72 16 30 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 31 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.16 4.82 5.75 -2.91 -0.02 4.80 16 33 H 0.43 7.88 7.10 -92.71 -0.66 7.22 16 34 H 0.10 3.01 7.00 -2.39 -0.02 3.00 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 2.72 8.14 -2.38 -0.02 2.71 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 39 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.07 3.51 6.37 -2.39 -0.02 3.49 16 41 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.13 4.81 4.32 -47.46 -0.21 4.61 16 Total: -1.00 -66.49 348.79 2.59 -63.90 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.20 Total: 19.93 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.18 Total: 9.63 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -5.73 Total: -104.47 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.09 Total: -34.38 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -66.49 2.59 -63.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541040542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.945 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds