Wall clock time and date at job start Tue Mar 31 2020 11:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31811 * 119.67289 * 2 1 4 4 C 1.31859 * 121.80787 * 180.28873 * 3 2 1 5 5 C 1.38284 * 120.92963 * 359.70420 * 4 3 2 6 6 C 1.38491 * 119.23943 * 359.97438 * 5 4 3 7 7 C 1.38905 * 119.67736 * 179.70754 * 2 1 3 8 8 N 1.39753 * 120.49077 * 359.97438 * 7 2 1 9 9 C 1.34772 * 119.99908 * 154.12893 * 8 7 2 10 10 O 1.21382 * 119.99959 * 1.89243 * 9 8 7 11 11 C 1.49355 * 120.00453 * 181.89179 * 9 8 7 12 12 O 1.21368 * 119.99543 * 353.33017 * 11 9 8 13 13 N 1.34770 * 120.00427 * 173.33189 * 11 9 8 14 14 C 1.46929 * 120.63043 * 171.51726 * 13 11 9 15 15 C 1.53191 * 108.89227 * 126.45932 * 14 13 11 16 16 C 1.53040 * 109.31528 * 54.56263 * 15 14 13 17 17 C 1.50701 * 109.45868 * 178.62700 * 16 15 14 18 18 H 1.07991 * 120.00267 * 0.44810 * 17 16 15 19 19 C 1.37882 * 119.99687 * 180.44596 * 17 16 15 20 20 N 1.31518 * 120.00015 * 7.54783 * 19 17 16 21 21 Si 1.86797 * 119.99905 * 187.54563 * 19 17 16 22 22 H 1.48507 * 109.46789 * 94.99889 * 21 19 17 23 23 H 1.48498 * 109.47021 * 214.99578 * 21 19 17 24 24 H 1.48500 * 109.47059 * 334.99786 * 21 19 17 25 25 C 1.53040 * 109.53677 * 298.63279 * 16 15 14 26 26 C 1.46960 * 120.65376 * 351.32728 * 13 11 9 27 27 H 1.08999 * 109.46755 * 270.28945 * 1 2 3 28 28 H 1.08996 * 109.47192 * 30.29193 * 1 2 3 29 29 H 1.09004 * 109.46786 * 150.29619 * 1 2 3 30 30 H 1.07997 * 119.53766 * 179.72111 * 4 3 2 31 31 H 1.07999 * 120.38650 * 179.97438 * 5 4 3 32 32 H 1.08002 * 120.82113 * 180.02562 * 6 5 4 33 33 H 0.97000 * 119.99776 * 334.13639 * 8 7 2 34 34 H 1.09003 * 109.58737 * 6.59958 * 14 13 11 35 35 H 1.09004 * 109.58667 * 246.31403 * 14 13 11 36 36 H 1.09006 * 109.49756 * 174.51842 * 15 14 13 37 37 H 1.09002 * 109.50078 * 294.57812 * 15 14 13 38 38 H 1.09000 * 109.45724 * 58.65268 * 16 15 14 39 39 H 0.96997 * 119.99734 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.49881 * 181.31386 * 25 16 15 41 41 H 1.08995 * 109.50042 * 301.41732 * 25 16 15 42 42 H 1.09002 * 109.46490 * 113.75560 * 26 13 11 43 43 H 1.08997 * 109.71063 * 353.46937 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1453 0.0000 4 6 3.4772 1.1944 -0.0056 5 6 4.2316 0.0355 -0.0057 6 6 3.5880 -1.1907 0.0008 7 6 2.1947 -1.2068 0.0062 8 7 1.4995 -2.4191 0.0129 9 6 2.0751 -3.5288 -0.4907 10 8 3.2101 -3.4829 -0.9187 11 6 1.3167 -4.8151 -0.5222 12 8 0.2304 -4.8922 0.0136 13 7 1.8384 -5.8900 -1.1455 14 6 1.1976 -7.2071 -1.0292 15 6 0.9440 -7.7612 -2.4347 16 6 2.2573 -7.7686 -3.2204 17 6 2.0183 -8.3446 -4.5923 18 1 1.0276 -8.6657 -4.8781 19 6 3.0645 -8.4614 -5.4828 20 7 4.2942 -8.2111 -5.0891 21 14 2.7354 -8.9753 -7.2483 22 1 2.6103 -7.7657 -8.1007 23 1 3.8602 -9.8119 -7.7382 24 1 1.4740 -9.7566 -7.3094 25 6 2.7824 -6.3372 -3.3531 26 6 3.0569 -5.7670 -1.9580 27 1 -0.3633 0.0052 1.0277 28 1 -0.3633 0.8873 -0.5183 29 1 -0.3633 -0.8927 -0.5093 30 1 3.9742 2.1532 -0.0100 31 1 5.3104 0.0860 -0.0108 32 1 4.1520 -2.1118 0.0013 33 1 0.6026 -2.4619 0.3799 34 1 0.2502 -7.1070 -0.4994 35 1 1.8525 -7.8851 -0.4818 36 1 0.5585 -8.7781 -2.3608 37 1 0.2161 -7.1327 -2.9478 38 1 2.9921 -8.3776 -2.6938 39 1 5.0301 -8.2930 -5.7157 40 1 3.7055 -6.3406 -3.9327 41 1 2.0376 -5.7218 -3.8576 42 1 3.8654 -6.3262 -1.4871 43 1 3.3387 -4.7173 -2.0412 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542898859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:39 Heat of formation + Delta-G solvation = -17.608340 kcal Electronic energy + Delta-G solvation = -26503.546818 eV Core-core repulsion = 22742.323199 eV Total energy + Delta-G solvation = -3761.223618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50139 -40.19830 -38.63859 -37.17085 -35.59580 -33.56067 -33.21450 -31.32830 -31.12185 -30.19644 -27.93872 -26.75620 -25.19062 -23.60605 -22.66037 -22.33299 -21.89248 -20.40650 -19.24118 -18.04241 -17.42954 -16.87903 -16.39683 -16.33537 -16.07155 -15.92071 -15.07772 -14.79304 -14.55660 -14.19778 -14.02717 -13.93061 -13.42755 -13.14310 -12.90344 -12.83798 -12.71723 -12.55788 -12.42882 -12.22860 -11.81933 -11.49083 -11.33665 -11.05353 -10.93455 -10.66599 -10.44648 -10.20082 -9.97463 -9.77743 -9.69612 -9.31744 -9.19986 -8.75430 -8.47170 -8.37003 -8.22091 -6.07206 -4.10583 0.65748 1.04482 1.51340 2.20645 3.13839 3.26941 3.34767 3.37442 3.47668 3.59004 4.06995 4.25468 4.39487 4.45194 4.67674 4.87074 5.01087 5.24284 5.25294 5.29567 5.31755 5.51935 5.65764 5.75332 5.77055 5.80318 5.92075 5.99194 6.00338 6.10958 6.32019 6.41078 6.51784 6.59175 6.66601 6.80478 6.93275 7.04053 7.15420 7.53971 7.56484 7.68198 7.73902 7.86248 7.94282 8.04019 8.36031 8.92300 9.53746 11.00393 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.003091 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.639761 B = 9055.124559 C = 9752.161742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.104 3.896 3 N -0.466 5.466 4 C 0.081 3.919 5 C -0.156 4.156 6 C -0.086 4.086 7 C 0.097 3.903 8 N -0.639 5.639 9 C 0.510 3.490 10 O -0.484 6.484 11 C 0.503 3.497 12 O -0.539 6.539 13 N -0.557 5.557 14 C 0.107 3.893 15 C -0.122 4.122 16 C 0.046 3.954 17 C -0.515 4.515 18 H 0.055 0.945 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.120 4.120 26 C 0.066 3.934 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.424 0.576 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.097 0.903 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 14.699 12.164 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.036 4.036 3 N -0.176 5.176 4 C -0.077 4.077 5 C -0.177 4.177 6 C -0.114 4.114 7 C 0.000 4.000 8 N -0.285 5.285 9 C 0.294 3.706 10 O -0.359 6.359 11 C 0.284 3.716 12 O -0.418 6.418 13 N -0.288 5.288 14 C -0.015 4.015 15 C -0.160 4.160 16 C 0.027 3.973 17 C -0.553 4.553 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.158 4.158 26 C -0.055 4.055 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.175 0.825 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.263 0.737 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.609 15.344 12.045 19.681 hybrid contribution 0.151 -1.135 -0.962 1.495 sum -2.458 14.210 11.083 18.187 Atomic orbital electron populations 1.20726 0.88556 1.04007 1.03342 1.21090 0.97060 0.86754 0.98733 1.67494 1.10292 1.27606 1.12183 1.22708 0.89249 0.98695 0.97009 1.22115 1.01767 0.92604 1.01177 1.22084 0.92610 1.00485 0.96191 1.18658 0.92489 0.85743 1.03137 1.43178 1.20213 1.06170 1.58936 1.20695 0.87053 0.85267 0.77571 1.90521 1.18007 1.84146 1.43193 1.19554 0.85933 0.84584 0.81500 1.90728 1.19855 1.83917 1.47320 1.48219 1.27703 1.07746 1.45177 1.21942 0.97980 0.81704 0.99832 1.22014 1.01197 0.99774 0.93061 1.18677 0.91030 0.92601 0.94982 1.21168 0.94845 1.41105 0.98231 0.92657 1.24959 0.95048 0.95246 0.98598 1.69912 0.98531 1.49462 1.34768 0.86638 0.77908 0.78503 0.85317 1.20741 1.21274 1.19919 1.21974 1.03203 0.98048 0.92625 1.23091 0.84065 1.05498 0.92815 0.90082 0.89719 0.90756 0.82543 0.84269 0.81993 0.73660 0.89934 0.91236 0.91673 0.92776 0.95079 0.92951 0.88446 0.94306 0.91615 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.62 36.00 0.35 -0.56 16 2 C 0.10 1.16 6.80 -82.36 -0.56 0.60 16 3 N -0.47 -5.36 10.27 -9.30 -0.10 -5.46 16 4 C 0.08 0.79 11.18 -17.52 -0.20 0.59 16 5 C -0.16 -1.51 10.10 -39.47 -0.40 -1.91 16 6 C -0.09 -1.02 8.88 -39.08 -0.35 -1.36 16 7 C 0.10 1.15 6.44 -83.59 -0.54 0.61 16 8 N -0.64 -7.56 4.94 -10.20 -0.05 -7.61 16 9 C 0.51 7.38 7.62 -11.63 -0.09 7.30 16 10 O -0.48 -7.61 10.20 5.47 0.06 -7.55 16 11 C 0.50 8.19 7.73 -11.63 -0.09 8.10 16 12 O -0.54 -9.21 15.92 5.48 0.09 -9.12 16 13 N -0.56 -9.73 2.98 -173.28 -0.52 -10.25 16 14 C 0.11 1.83 6.44 -3.71 -0.02 1.80 16 15 C -0.12 -2.40 5.30 -26.61 -0.14 -2.55 16 16 C 0.05 1.07 2.00 -91.73 -0.18 0.88 16 17 C -0.52 -13.61 8.55 -34.44 -0.29 -13.91 16 18 H 0.06 1.46 7.75 -52.49 -0.41 1.05 16 19 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 20 N -0.89 -24.49 11.69 55.43 0.65 -23.84 16 21 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.12 -2.67 5.16 -26.61 -0.14 -2.80 16 26 C 0.07 1.22 5.97 -3.69 -0.02 1.20 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.58 7.00 -51.93 -0.36 0.21 16 30 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.16 2.04 5.71 -52.49 -0.30 1.74 16 33 H 0.42 4.27 6.94 -40.82 -0.28 3.99 16 34 H 0.08 1.34 7.00 -51.93 -0.36 0.97 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.10 2.42 6.37 -51.93 -0.33 2.09 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.12 2.17 4.33 -54.75 -0.24 1.93 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -29.69 348.54 -8.06 -37.74 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.65 Total: 5.44 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.77 Total: -0.40 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.01 Total: -47.16 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.14 Total: -16.67 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.69 -8.06 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542898859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.134 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds