Wall clock time and date at job start Tue Mar 31 2020 11:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 110.28524 * 2 1 4 4 C 1.53003 * 109.46876 * 63.02319 * 3 2 1 5 5 C 1.50699 * 109.46686 * 179.97438 * 4 3 2 6 6 O 1.21272 * 120.00464 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99539 * 180.02562 * 5 4 3 8 8 C 1.39467 * 119.99975 * 174.98180 * 7 5 4 9 9 C 1.38598 * 119.58054 * 185.36839 * 8 7 5 10 10 C 1.40808 * 118.79445 * 179.97438 * 9 8 7 11 11 C 1.41538 * 120.99759 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00053 * 151.69282 * 11 10 9 13 13 C 1.40028 * 120.00122 * 331.70506 * 11 10 9 14 14 N 1.30749 * 119.99732 * 350.17115 * 13 11 10 15 15 Si 1.86799 * 120.00481 * 170.17790 * 13 11 10 16 16 H 1.48501 * 109.46856 * 59.99622 * 15 13 11 17 17 H 1.48497 * 109.47453 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47023 * 299.99621 * 15 13 11 19 19 C 1.41180 * 118.00898 * 0.02562 * 10 9 8 20 20 C 1.37587 * 119.01293 * 359.97438 * 19 10 9 21 21 N 1.32083 * 121.11022 * 359.74625 * 20 19 10 22 22 C 1.54483 * 110.24749 * 238.02449 * 2 1 3 23 23 C 1.54625 * 101.76792 * 266.41551 * 22 2 1 24 24 C 1.51282 * 104.31151 * 335.13404 * 23 22 2 25 25 O 1.21278 * 124.94241 * 196.27378 * 24 23 22 26 26 N 1.34740 * 109.93618 * 16.31707 * 24 23 22 27 27 H 1.09002 * 109.47067 * 181.97870 * 1 2 3 28 28 H 1.09004 * 109.47279 * 301.96968 * 1 2 3 29 29 H 1.08996 * 109.47159 * 61.97666 * 1 2 3 30 30 H 1.08994 * 109.46948 * 183.02224 * 3 2 1 31 31 H 1.08998 * 109.47068 * 303.02338 * 3 2 1 32 32 H 1.08993 * 109.47494 * 300.00212 * 4 3 2 33 33 H 1.09009 * 109.46785 * 60.00008 * 4 3 2 34 34 H 0.96994 * 120.00009 * 354.97970 * 7 5 4 35 35 H 1.07996 * 120.60117 * 0.02562 * 9 8 7 36 36 H 0.96994 * 119.99666 * 180.02562 * 14 13 11 37 37 H 1.07999 * 120.49483 * 179.97438 * 19 10 9 38 38 H 1.08002 * 119.44550 * 180.02562 * 20 19 10 39 39 H 1.08996 * 110.97104 * 148.29091 * 22 2 1 40 40 H 1.09007 * 110.99862 * 24.54991 * 22 2 1 41 41 H 1.08998 * 110.48709 * 93.87691 * 23 22 2 42 42 H 1.08990 * 110.48797 * 216.38939 * 23 22 2 43 43 H 0.97004 * 124.30285 * 180.39976 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0604 1.4351 0.0000 4 6 1.6234 2.1403 1.2856 5 6 2.1464 3.5536 1.2858 6 8 2.8035 3.9573 0.3499 7 7 1.8839 4.3691 2.3264 8 6 2.4538 5.6410 2.3767 9 6 2.2692 6.4295 3.5015 10 6 2.8525 7.7106 3.5348 11 6 2.6934 8.5549 4.6596 12 1 3.4530 9.2843 4.8991 13 6 1.5512 8.4444 5.4621 14 7 0.5470 7.7037 5.0714 15 14 1.4619 9.3552 7.0905 16 1 1.5908 10.8147 6.8490 17 1 0.1579 9.0752 7.7435 18 1 2.5658 8.9000 7.9734 19 6 3.5999 8.1283 2.4122 20 6 3.7279 7.2748 1.3407 21 7 3.1693 6.0780 1.3510 22 6 2.0646 -0.7675 -1.2295 23 6 2.2625 -2.1884 -0.6526 24 6 2.4529 -1.9663 0.8317 25 8 2.9107 -2.7824 1.6031 26 7 2.0379 -0.7293 1.1680 27 1 -0.3633 -1.0271 0.0355 28 1 -0.3634 0.5441 0.8718 29 1 -0.3633 0.4828 -0.9071 30 1 3.1489 1.4201 -0.0542 31 1 1.6611 1.9701 -0.8616 32 1 0.5349 2.1553 1.3398 33 1 2.0228 1.6052 2.1472 34 1 1.2986 4.0714 3.0402 35 1 1.6893 6.0674 4.3375 36 1 -0.2443 7.6274 5.6271 37 1 4.0642 9.1032 2.3949 38 1 4.2984 7.5870 0.4784 39 1 3.0119 -0.3489 -1.5690 40 1 1.3313 -0.7726 -2.0360 41 1 1.3800 -2.8012 -0.8365 42 1 3.1471 -2.6558 -1.0849 43 1 2.0714 -0.3671 2.0673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543371604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:11 Heat of formation + Delta-G solvation = -69.741524 kcal Electronic energy + Delta-G solvation = -25661.090778 eV Core-core repulsion = 21897.606495 eV Total energy + Delta-G solvation = -3763.484283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71326 -41.10820 -39.59638 -38.26597 -36.12428 -35.44951 -34.04586 -32.45512 -32.26645 -30.92150 -29.79724 -27.91642 -26.93937 -24.73539 -23.84089 -22.94424 -21.80502 -21.35281 -20.65633 -19.45553 -18.52282 -17.92318 -17.33006 -17.07031 -16.96005 -16.64565 -16.08325 -15.94217 -15.67291 -15.31916 -15.04043 -14.91386 -14.72238 -14.39692 -14.31740 -14.12259 -13.62181 -13.45692 -13.24159 -13.16274 -13.04539 -12.88508 -12.69579 -12.53042 -12.11656 -11.97861 -11.93409 -11.77318 -11.52418 -11.45867 -11.17079 -10.97030 -10.91790 -10.12804 -9.91593 -9.60795 -8.87276 -8.59980 -6.58654 0.73710 0.99450 1.40709 1.51459 1.55026 1.58006 1.90737 2.17527 2.20195 2.41222 2.82218 3.35248 3.46875 3.66491 3.73071 3.84897 4.01165 4.11494 4.19045 4.30812 4.34921 4.56259 4.59434 4.75362 4.78776 4.85447 4.91338 4.94853 4.98361 5.00345 5.08413 5.15961 5.16669 5.22614 5.24681 5.45046 5.46869 5.65153 5.90632 5.91464 6.05846 6.14718 6.48028 6.61911 6.78352 6.83370 7.25380 7.34053 7.82615 8.29155 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.002518 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.147300 B =11117.374880 C =11810.724042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 C -0.098 4.098 4 C -0.130 4.130 5 C 0.492 3.508 6 O -0.526 6.526 7 N -0.655 5.655 8 C 0.331 3.669 9 C -0.255 4.255 10 C 0.113 3.887 11 C -0.488 4.488 12 H 0.082 0.918 13 C 0.038 3.962 14 N -0.819 5.819 15 Si 0.988 3.012 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.260 1.260 19 C -0.296 4.296 20 C 0.111 3.889 21 N -0.575 5.575 22 C -0.119 4.119 23 C -0.149 4.149 24 C 0.509 3.491 25 O -0.594 6.594 26 N -0.718 5.718 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.423 0.577 35 H 0.125 0.875 36 H 0.291 0.709 37 H 0.115 0.885 38 H 0.150 0.850 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -14.821 -7.450 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.075 3.925 3 C -0.137 4.137 4 C -0.170 4.170 5 C 0.280 3.720 6 O -0.400 6.400 7 N -0.303 5.303 8 C 0.105 3.895 9 C -0.281 4.281 10 C 0.105 3.895 11 C -0.519 4.519 12 H 0.100 0.900 13 C -0.178 4.178 14 N -0.445 5.445 15 Si 0.809 3.191 16 H -0.186 1.186 17 H -0.190 1.190 18 H -0.185 1.185 19 C -0.320 4.320 20 C -0.043 4.043 21 N -0.295 5.295 22 C -0.156 4.156 23 C -0.189 4.189 24 C 0.297 3.703 25 O -0.475 6.475 26 N -0.372 5.372 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.260 0.740 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.167 0.833 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.938 -15.718 -8.560 18.567 hybrid contribution -0.231 1.386 2.357 2.744 sum -5.169 -14.332 -6.203 16.450 Atomic orbital electron populations 1.22263 0.91979 1.03303 1.04140 1.21181 0.95288 0.90669 0.85397 1.21606 1.01263 0.93455 0.97341 1.21794 1.04414 0.89224 1.01527 1.21730 0.80191 0.88745 0.81360 1.90755 1.38094 1.76702 1.34402 1.43597 1.48572 1.12504 1.25610 1.18507 0.93425 0.86385 0.91156 1.21591 1.11866 0.95708 0.98889 1.18031 0.88234 0.91136 0.92118 1.19821 1.05446 1.17697 1.08909 0.89982 1.26780 0.93768 0.95159 1.02130 1.69774 1.04741 1.32470 1.37506 0.85154 0.78745 0.79021 0.76223 1.18562 1.18976 1.18479 1.22137 1.11776 1.01758 0.96311 1.22233 0.95978 0.88811 0.97259 1.67365 1.16461 1.17475 1.28152 1.22781 1.03762 0.92399 0.96703 1.22385 1.06221 0.99812 0.90463 1.21638 0.74960 0.81293 0.92370 1.90725 1.48024 1.49228 1.59543 1.46671 1.63211 1.15331 1.12000 0.91416 0.91429 0.89384 0.92274 0.89388 0.85633 0.87643 0.73969 0.85719 0.89791 0.86671 0.83252 0.89822 0.86180 0.85846 0.87559 0.75291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.55 71.98 0.62 -0.75 16 2 C 0.16 1.93 0.87 4.06 0.00 1.94 16 3 C -0.10 -1.71 3.71 30.60 0.11 -1.60 16 4 C -0.13 -2.47 5.25 29.85 0.16 -2.31 16 5 C 0.49 16.39 7.79 87.66 0.68 17.07 16 6 O -0.53 -22.45 14.24 -3.00 -0.04 -22.50 16 7 N -0.66 -23.97 5.39 -308.66 -1.66 -25.64 16 8 C 0.33 15.86 7.42 132.75 0.98 16.84 16 9 C -0.26 -12.96 8.58 22.98 0.20 -12.76 16 10 C 0.11 6.01 5.58 -21.11 -0.12 5.89 16 11 C -0.49 -25.17 9.13 23.52 0.21 -24.96 16 12 H 0.08 4.05 7.87 -2.91 -0.02 4.03 16 13 C 0.04 1.79 5.30 85.29 0.45 2.24 16 14 N -0.82 -39.69 10.83 21.84 0.24 -39.45 16 15 Si 0.99 35.79 29.57 68.60 2.03 37.82 16 16 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 17 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 18 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 19 C -0.30 -14.65 9.90 22.84 0.23 -14.42 16 20 C 0.11 5.31 11.15 84.50 0.94 6.25 16 21 N -0.57 -29.08 7.85 -193.53 -1.52 -30.60 16 22 C -0.12 -1.10 6.21 31.65 0.20 -0.90 16 23 C -0.15 -1.74 6.85 30.59 0.21 -1.53 16 24 C 0.51 10.49 8.46 87.85 0.74 11.23 16 25 O -0.59 -18.31 18.03 -3.02 -0.05 -18.37 16 26 N -0.72 -11.54 5.37 -419.54 -2.25 -13.79 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.58 6.49 -2.39 -0.02 0.57 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 1.30 8.05 -2.39 -0.02 1.28 16 31 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.13 1.69 6.53 -2.39 -0.02 1.67 16 33 H 0.11 1.65 6.74 -2.38 -0.02 1.64 16 34 H 0.42 12.32 8.70 -92.71 -0.81 11.51 16 35 H 0.13 6.29 6.27 -2.91 -0.02 6.27 16 36 H 0.29 12.64 8.29 -92.71 -0.77 11.87 16 37 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 38 H 0.15 6.13 8.06 -2.91 -0.02 6.11 16 39 H 0.08 0.88 7.88 -2.39 -0.02 0.86 16 40 H 0.12 0.51 7.90 -2.38 -0.02 0.49 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.41 6.37 7.51 -92.71 -0.70 5.67 16 Total: -1.00 -75.76 356.34 1.91 -73.84 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.44 Total: 36.43 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 5.62 Total: 2.25 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -5.20 Total: -109.48 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.10 Total: -40.87 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 2.03 Total: 37.82 kcal Total: -75.76 1.91 -73.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543371604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.103 kcal (2) G-P(sol) polarization free energy of solvation -75.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds