Wall clock time and date at job start Tue Mar 31 2020 11:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.22031 * 2 1 4 4 C 1.53000 * 109.46835 * 300.70283 * 3 2 1 5 5 C 1.50707 * 109.47071 * 179.97438 * 4 3 2 6 6 O 1.21270 * 119.99718 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00068 * 179.97438 * 5 4 3 8 8 C 1.39468 * 120.00176 * 174.97774 * 7 5 4 9 9 C 1.38598 * 119.58245 * 185.38334 * 8 7 5 10 10 C 1.40807 * 118.79702 * 180.29515 * 9 8 7 11 11 C 1.41541 * 120.99791 * 179.75247 * 10 9 8 12 12 H 1.08002 * 119.99843 * 331.47191 * 11 10 9 13 13 C 1.40033 * 119.99986 * 151.19654 * 11 10 9 14 14 N 1.30743 * 119.99857 * 350.50245 * 13 11 10 15 15 Si 1.86801 * 119.99961 * 170.50691 * 13 11 10 16 16 H 1.48498 * 109.47018 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47112 * 119.99941 * 15 13 11 18 18 H 1.48500 * 109.46900 * 239.99538 * 15 13 11 19 19 C 1.41179 * 118.00488 * 359.47781 * 10 9 8 20 20 C 1.37590 * 119.01597 * 0.25037 * 19 10 9 21 21 N 1.32081 * 121.10673 * 0.02562 * 20 19 10 22 22 C 1.54486 * 110.24743 * 121.92781 * 2 1 3 23 23 C 1.54629 * 101.76364 * 93.67055 * 22 2 1 24 24 C 1.51276 * 104.19791 * 24.79831 * 23 22 2 25 25 O 1.21277 * 124.94686 * 163.77109 * 24 23 22 26 26 N 1.34564 * 110.14010 * 343.67871 * 24 23 22 27 27 H 1.09002 * 109.47079 * 59.29819 * 1 2 3 28 28 H 1.08995 * 109.47368 * 179.30097 * 1 2 3 29 29 H 1.09004 * 109.46956 * 299.30177 * 1 2 3 30 30 H 1.08996 * 109.47754 * 180.69919 * 3 2 1 31 31 H 1.09001 * 109.47022 * 60.69651 * 3 2 1 32 32 H 1.08993 * 109.47761 * 59.99876 * 4 3 2 33 33 H 1.09001 * 109.46799 * 299.99505 * 4 3 2 34 34 H 0.97006 * 120.00255 * 354.98718 * 7 5 4 35 35 H 1.07999 * 120.59994 * 0.03764 * 9 8 7 36 36 H 0.96998 * 119.99580 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.48963 * 180.23502 * 19 10 9 38 38 H 1.08002 * 119.44560 * 180.02562 * 20 19 10 39 39 H 1.08991 * 110.97272 * 211.79389 * 22 2 1 40 40 H 1.09005 * 110.96486 * 335.51703 * 22 2 1 41 41 H 1.08996 * 110.48705 * 143.48228 * 23 22 2 42 42 H 1.09005 * 110.48592 * 265.99245 * 23 22 2 43 43 H 0.97003 * 124.43850 * 179.64204 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4357 0.0000 4 6 1.5439 2.1688 -1.2403 5 6 2.0642 3.5832 -1.2400 6 8 2.7770 3.9668 -0.3371 7 7 1.7383 4.4213 -2.2438 8 6 2.1319 5.7582 -2.1917 9 6 1.6981 6.6380 -3.1708 10 6 2.1106 7.9827 -3.1056 11 6 1.6996 8.9195 -4.0837 12 1 1.4785 8.5897 -5.0881 13 6 1.5742 10.2731 -3.7477 14 7 1.6540 10.6463 -2.4972 15 14 1.2928 11.5456 -5.0860 16 1 1.2406 10.8705 -6.4077 17 1 0.0082 12.2483 -4.8387 18 1 2.4052 12.5293 -5.0755 19 6 2.9417 8.3697 -2.0320 20 6 3.3163 7.4255 -1.1039 21 7 2.9119 6.1722 -1.2042 22 6 2.0646 -0.7665 1.2301 23 6 2.2646 -2.1874 0.6537 24 6 2.4538 -1.9625 -0.8302 25 8 2.9120 -2.7769 -1.6033 26 7 2.0379 -0.7283 -1.1686 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3634 -1.0275 -0.0125 29 1 -0.3633 0.5030 0.8962 30 1 3.1486 1.4216 -0.0125 31 1 1.7124 1.9505 0.8962 32 1 0.4541 2.1830 -1.2278 33 1 1.8903 1.6540 -2.1365 34 1 1.2297 4.0948 -3.0026 35 1 1.0585 6.2973 -3.9717 36 1 1.5675 11.5840 -2.2645 37 1 3.2787 9.3917 -1.9407 38 1 3.9516 7.7141 -0.2796 39 1 3.0112 -0.3467 1.5703 40 1 1.3305 -0.7716 2.0359 41 1 3.1508 -2.6528 1.0851 42 1 1.3836 -2.8018 0.8392 43 1 2.0702 -0.3659 -2.0677 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543371605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:14 Heat of formation + Delta-G solvation = -70.035785 kcal Electronic energy + Delta-G solvation = -25458.243382 eV Core-core repulsion = 21694.746339 eV Total energy + Delta-G solvation = -3763.497043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72016 -41.11861 -39.60387 -38.26173 -36.24916 -35.28601 -34.04971 -32.59889 -32.27092 -30.88867 -29.74096 -27.92798 -26.96292 -24.76320 -23.69628 -23.09392 -21.79412 -21.31124 -20.62333 -19.65058 -18.39580 -17.78607 -17.57942 -17.05644 -16.86039 -16.63437 -16.06728 -15.96285 -15.73864 -15.32965 -15.09132 -14.87728 -14.69826 -14.41035 -14.22612 -14.12654 -13.60521 -13.47580 -13.25365 -13.16142 -13.03364 -12.89595 -12.84610 -12.51534 -12.10445 -11.97118 -11.83542 -11.76271 -11.52208 -11.43731 -11.21212 -10.93919 -10.90596 -10.12442 -9.96379 -9.61011 -8.86768 -8.61480 -6.59736 0.74984 0.95099 1.40561 1.52441 1.55834 1.59023 1.93283 2.14276 2.21689 2.41956 2.81839 3.35842 3.47283 3.67318 3.71978 3.84976 4.02344 4.09934 4.19412 4.31336 4.34526 4.57302 4.60302 4.74485 4.78922 4.86072 4.92700 4.95238 4.98463 5.00790 5.03721 5.15947 5.17003 5.23920 5.26006 5.45405 5.45894 5.64906 5.90893 5.95244 6.07359 6.13057 6.45296 6.63902 6.79001 6.82054 7.26584 7.35024 7.83354 8.28925 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034449 B = 0.002183 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.591518 B =12824.924746 C =13113.411310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.161 3.839 3 C -0.100 4.100 4 C -0.129 4.129 5 C 0.491 3.509 6 O -0.528 6.528 7 N -0.654 5.654 8 C 0.345 3.655 9 C -0.311 4.311 10 C 0.117 3.883 11 C -0.484 4.484 12 H 0.086 0.914 13 C 0.033 3.967 14 N -0.823 5.823 15 Si 0.992 3.008 16 H -0.255 1.255 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.239 4.239 20 C 0.096 3.904 21 N -0.574 5.574 22 C -0.120 4.120 23 C -0.149 4.149 24 C 0.509 3.491 25 O -0.594 6.594 26 N -0.716 5.716 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.426 0.574 35 H 0.124 0.876 36 H 0.291 0.709 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 -17.440 4.540 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.075 3.925 3 C -0.138 4.138 4 C -0.169 4.169 5 C 0.279 3.721 6 O -0.401 6.401 7 N -0.302 5.302 8 C 0.116 3.884 9 C -0.336 4.336 10 C 0.108 3.892 11 C -0.515 4.515 12 H 0.104 0.896 13 C -0.182 4.182 14 N -0.449 5.449 15 Si 0.812 3.188 16 H -0.178 1.178 17 H -0.191 1.191 18 H -0.190 1.190 19 C -0.263 4.263 20 C -0.056 4.056 21 N -0.294 5.294 22 C -0.158 4.158 23 C -0.189 4.189 24 C 0.297 3.703 25 O -0.476 6.476 26 N -0.370 5.370 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.128 0.872 34 H 0.264 0.736 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.057 -18.115 5.760 19.670 hybrid contribution -0.297 1.671 -1.918 2.561 sum -5.354 -16.444 3.842 17.715 Atomic orbital electron populations 1.22274 0.91958 1.03363 1.04162 1.21169 0.95317 0.90670 0.85372 1.21608 1.00910 0.93302 0.98021 1.21811 1.04281 0.88968 1.01793 1.21779 0.80363 0.88823 0.81174 1.90776 1.35478 1.77675 1.36157 1.43564 1.55553 1.06457 1.24616 1.18355 0.93056 0.85213 0.91743 1.21477 1.12566 0.95059 1.04540 1.18034 0.87395 0.91855 0.91883 1.19884 1.41328 0.92404 0.97905 0.89566 1.26882 0.91565 1.01312 0.98484 1.69820 1.35521 1.19704 1.19839 0.85011 0.78775 0.76867 0.78175 1.17785 1.19054 1.19024 1.22210 1.04064 1.00261 0.99756 1.22193 0.97549 0.88164 0.97659 1.67347 1.18517 1.18114 1.25465 1.22779 1.03726 0.92487 0.96771 1.22381 1.06205 0.99769 0.90529 1.21581 0.75028 0.81336 0.92317 1.90726 1.48064 1.49443 1.59344 1.46587 1.63062 1.15367 1.11973 0.91159 0.91404 0.89543 0.92308 0.89657 0.85491 0.87192 0.73554 0.85851 0.89858 0.86602 0.84349 0.89892 0.86292 0.87613 0.85846 0.75146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 8.43 71.98 0.61 -0.60 16 2 C 0.16 1.78 0.87 4.06 0.00 1.79 16 3 C -0.10 -1.64 3.70 30.59 0.11 -1.53 16 4 C -0.13 -2.18 5.21 29.85 0.16 -2.03 16 5 C 0.49 15.40 7.79 87.66 0.68 16.08 16 6 O -0.53 -22.14 14.24 -3.00 -0.04 -22.18 16 7 N -0.65 -21.70 5.39 -308.67 -1.66 -23.37 16 8 C 0.35 15.71 7.42 132.75 0.98 16.70 16 9 C -0.31 -14.65 9.73 22.98 0.22 -14.43 16 10 C 0.12 6.18 5.58 -21.11 -0.12 6.06 16 11 C -0.48 -24.83 9.12 23.52 0.21 -24.61 16 12 H 0.09 4.17 7.87 -2.91 -0.02 4.15 16 13 C 0.03 1.61 5.31 85.29 0.45 2.06 16 14 N -0.82 -41.63 10.83 21.84 0.24 -41.39 16 15 Si 0.99 36.16 29.57 68.60 2.03 38.19 16 16 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 17 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 18 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 19 C -0.24 -12.73 8.75 22.84 0.20 -12.53 16 20 C 0.10 4.84 11.15 84.50 0.94 5.79 16 21 N -0.57 -29.18 7.85 -193.53 -1.52 -30.70 16 22 C -0.12 -1.05 6.21 31.65 0.20 -0.86 16 23 C -0.15 -1.65 6.86 30.59 0.21 -1.44 16 24 C 0.51 9.99 8.43 87.87 0.74 10.74 16 25 O -0.59 -17.73 18.03 -3.02 -0.05 -17.78 16 26 N -0.72 -10.57 5.40 -419.79 -2.27 -12.84 16 27 H 0.07 0.50 6.45 -2.39 -0.02 0.48 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.13 1.45 6.46 -2.39 -0.02 1.44 16 33 H 0.11 1.39 6.89 -2.39 -0.02 1.37 16 34 H 0.43 10.14 8.70 -92.70 -0.81 9.34 16 35 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 36 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 37 H 0.12 6.32 6.27 -2.91 -0.02 6.30 16 38 H 0.14 6.32 8.06 -2.91 -0.02 6.30 16 39 H 0.08 0.84 7.91 -2.39 -0.02 0.82 16 40 H 0.12 0.48 7.89 -2.38 -0.02 0.46 16 41 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.41 5.66 7.69 -92.71 -0.71 4.95 16 Total: -1.00 -77.58 356.49 1.87 -75.71 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.46 Total: 33.18 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.61 Total: 1.18 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -5.21 Total: -108.30 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.10 Total: -39.97 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -77.58 1.87 -75.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543371605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.674 kcal (2) G-P(sol) polarization free energy of solvation -77.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds