Wall clock time and date at job start Tue Mar 31 2020 11:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.53707 * 2 1 4 4 C 1.38483 * 119.24585 * 179.97438 * 3 2 1 5 5 C 1.39341 * 118.35364 * 0.02562 * 4 3 2 6 6 N 1.39753 * 120.49083 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00290 * 325.27903 * 6 5 4 8 8 O 1.21384 * 120.00158 * 3.96191 * 7 6 5 9 9 C 1.49351 * 120.00107 * 183.96736 * 7 6 5 10 10 O 1.21358 * 119.99965 * 353.42783 * 9 7 6 11 11 N 1.34778 * 120.00295 * 173.70882 * 9 7 6 12 12 C 1.46928 * 120.62599 * 350.84105 * 11 9 7 13 13 C 1.52760 * 109.00681 * 233.58311 * 12 11 9 14 14 C 1.53036 * 109.38404 * 305.58923 * 13 12 11 15 15 C 1.50708 * 109.44702 * 181.25159 * 14 13 12 16 16 H 1.07997 * 119.99792 * 239.93782 * 15 14 13 17 17 C 1.37883 * 119.99763 * 59.94498 * 15 14 13 18 18 N 1.31511 * 120.00106 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47050 * 59.99914 * 19 17 15 21 21 H 1.48498 * 109.46632 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47130 * 299.99785 * 19 17 15 23 23 C 1.53036 * 109.53779 * 61.24326 * 14 13 12 24 24 C 1.46920 * 120.63512 * 171.12491 * 11 9 7 25 25 C 1.38901 * 119.01278 * 0.27269 * 5 4 3 26 26 N 1.31813 * 120.65462 * 359.42797 * 25 5 4 27 27 H 1.08993 * 109.46832 * 89.99802 * 1 2 3 28 28 H 1.09001 * 109.46737 * 210.00113 * 1 2 3 29 29 H 1.09000 * 109.46474 * 329.99599 * 1 2 3 30 30 H 1.08002 * 120.37293 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.82624 * 180.02562 * 4 3 2 32 32 H 0.97000 * 119.99688 * 145.27469 * 6 5 4 33 33 H 1.08997 * 109.59224 * 353.42289 * 12 11 9 34 34 H 1.09010 * 109.58481 * 113.84702 * 12 11 9 35 35 H 1.09000 * 109.56165 * 185.55736 * 13 12 11 36 36 H 1.08995 * 109.35931 * 65.50304 * 13 12 11 37 37 H 1.08999 * 109.46455 * 301.22075 * 14 13 12 38 38 H 0.96995 * 120.00372 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.49786 * 178.68348 * 23 14 13 40 40 H 1.09003 * 109.52587 * 58.59756 * 23 14 13 41 41 H 1.09002 * 109.58878 * 246.15690 * 24 11 9 42 42 H 1.09005 * 109.58453 * 6.43362 * 24 11 9 43 43 H 1.08004 * 119.66924 * 179.73320 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2031 0.0000 4 6 3.5736 1.1961 0.0005 5 6 4.2291 -0.0335 0.0005 6 7 5.6253 -0.0927 0.0005 7 6 6.3393 0.8372 -0.6642 8 8 5.7735 1.7664 -1.2026 9 6 7.8267 0.7243 -0.7387 10 8 8.4026 -0.1344 -0.1033 11 7 8.5299 1.5797 -1.5070 12 6 7.8436 2.4951 -2.4289 13 6 8.4262 2.3194 -3.8300 14 6 9.9446 2.5031 -3.7755 15 6 10.5174 2.3605 -5.1622 16 1 11.2446 1.5894 -5.3693 17 6 10.1130 3.2146 -6.1662 18 7 9.2272 4.1533 -5.9140 19 14 10.8236 3.0383 -7.8848 20 1 10.5085 1.6872 -8.4145 21 1 10.2298 4.0689 -8.7739 22 1 12.2966 3.2183 -7.8323 23 6 10.5561 1.4405 -2.8596 24 6 9.9974 1.6101 -1.4433 25 6 3.4741 -1.1994 -0.0058 26 7 2.1570 -1.1473 -0.0004 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3632 0.8900 0.5139 30 1 1.6473 2.1376 0.0004 31 1 4.1317 2.1207 0.0010 32 1 6.0806 -0.8031 0.4790 33 1 6.7782 2.2656 -2.4462 34 1 7.9926 3.5239 -2.1006 35 1 7.9939 3.0619 -4.5008 36 1 8.1937 1.3192 -4.1952 37 1 10.1767 3.4946 -3.3869 38 1 8.9425 4.7539 -6.6204 39 1 11.6397 1.5573 -2.8396 40 1 10.3039 0.4482 -3.2337 41 1 10.3256 2.5651 -1.0330 42 1 10.3525 0.7983 -0.8084 43 1 3.9712 -2.1582 -0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543825072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:41 Heat of formation + Delta-G solvation = -20.820511 kcal Electronic energy + Delta-G solvation = -26197.236218 eV Core-core repulsion = 22435.873309 eV Total energy + Delta-G solvation = -3761.362909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38041 -40.20615 -38.64720 -37.15325 -35.63585 -33.54035 -32.55398 -31.94154 -31.30404 -30.17345 -27.85514 -26.57253 -24.74601 -23.92154 -22.86440 -22.48117 -21.68066 -20.35610 -19.20002 -17.97401 -17.39052 -16.75938 -16.61099 -16.27317 -16.08606 -15.74323 -15.07233 -14.70606 -14.56802 -14.17315 -14.11381 -13.91591 -13.39251 -13.15835 -12.92474 -12.87677 -12.69741 -12.51722 -12.41842 -12.29472 -11.82997 -11.45729 -11.14128 -10.97447 -10.91763 -10.67805 -10.42935 -10.14553 -9.94772 -9.88848 -9.69489 -9.28389 -9.23504 -8.75130 -8.50555 -8.39092 -8.17890 -6.04328 -4.10959 0.66043 1.04195 1.49373 2.24777 3.16814 3.28788 3.33836 3.36398 3.49851 3.56790 4.09757 4.29981 4.39452 4.52455 4.64263 4.75083 4.99119 5.25313 5.31694 5.33381 5.35577 5.53228 5.58923 5.75750 5.80568 5.81932 5.93003 5.95130 6.00541 6.14968 6.34995 6.40912 6.53683 6.61567 6.68605 6.82583 6.95392 7.08057 7.20841 7.57660 7.59740 7.69761 7.72831 7.88806 7.98748 8.09063 8.37488 8.91993 9.54150 11.01180 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.002933 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.433852 B = 9544.697822 C =10525.322546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.108 3.892 3 C -0.151 4.151 4 C -0.073 4.073 5 C 0.088 3.912 6 N -0.644 5.644 7 C 0.511 3.489 8 O -0.486 6.486 9 C 0.503 3.497 10 O -0.539 6.539 11 N -0.558 5.558 12 C 0.066 3.934 13 C -0.124 4.124 14 C 0.046 3.954 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.123 4.123 24 C 0.107 3.893 25 C 0.088 3.912 26 N -0.467 5.467 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.425 0.575 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.036 0.964 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.035 -5.930 13.758 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.030 4.030 3 C -0.171 4.171 4 C -0.101 4.101 5 C -0.009 4.009 6 N -0.291 5.291 7 C 0.295 3.705 8 O -0.360 6.360 9 C 0.284 3.716 10 O -0.419 6.419 11 N -0.289 5.289 12 C -0.054 4.054 13 C -0.162 4.162 14 C 0.028 3.972 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.161 4.161 24 C -0.014 4.014 25 C -0.072 4.072 26 N -0.176 5.176 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.263 0.737 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.624 -6.292 13.572 20.234 hybrid contribution 1.244 0.471 -0.908 1.611 sum -12.380 -5.821 12.664 18.642 Atomic orbital electron populations 1.20683 0.88663 1.03369 1.03146 1.21309 0.97187 0.88314 0.96229 1.21918 0.94089 0.99455 1.01674 1.21800 0.94487 0.98108 0.95688 1.18821 0.83233 0.95559 1.03247 1.43103 1.04049 1.30862 1.51118 1.20670 0.89258 0.82319 0.78278 1.90580 1.71786 1.31065 1.42539 1.19570 0.86894 0.83046 0.82047 1.90723 1.70830 1.34214 1.46112 1.48234 1.07850 1.35509 1.37350 1.23008 0.99634 0.92143 0.90600 1.21968 0.99582 1.01755 0.92928 1.18674 0.91303 0.93378 0.93859 1.21144 1.24068 1.15730 0.94284 0.92735 1.24964 0.95046 0.95125 0.98820 1.69820 1.31290 1.18668 1.33140 0.86668 0.79365 0.77752 0.84280 1.20345 1.21288 1.20295 1.22019 0.99803 1.01371 0.92903 1.21932 0.77522 1.02031 0.99950 1.22617 0.89357 0.96979 0.98294 1.67504 1.08576 1.29250 1.12307 0.90392 0.90540 0.90715 0.84290 0.83023 0.73702 0.86341 0.91731 0.87487 0.94493 0.95367 0.92859 0.91739 0.92761 0.91290 0.89956 0.82258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.17 36.01 0.37 -0.34 16 2 C 0.11 1.09 6.78 -82.56 -0.56 0.53 16 3 C -0.15 -1.49 9.73 -39.47 -0.38 -1.87 16 4 C -0.07 -0.85 8.80 -39.08 -0.34 -1.19 16 5 C 0.09 1.01 6.32 -83.59 -0.53 0.48 16 6 N -0.64 -7.49 5.34 -10.20 -0.05 -7.55 16 7 C 0.51 7.47 7.59 -11.63 -0.09 7.39 16 8 O -0.49 -7.81 10.67 5.47 0.06 -7.75 16 9 C 0.50 8.31 7.73 -11.63 -0.09 8.22 16 10 O -0.54 -9.35 15.92 5.49 0.09 -9.26 16 11 N -0.56 -9.92 2.98 -173.58 -0.52 -10.43 16 12 C 0.07 1.26 5.94 -3.93 -0.02 1.24 16 13 C -0.12 -2.80 5.14 -26.84 -0.14 -2.94 16 14 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 15 C -0.51 -13.64 8.56 -34.43 -0.29 -13.94 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -24.56 11.30 55.43 0.63 -23.93 16 19 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.12 -2.44 5.30 -26.62 -0.14 -2.58 16 24 C 0.11 1.86 6.45 -3.72 -0.02 1.83 16 25 C 0.09 0.94 11.13 -17.31 -0.19 0.74 16 26 N -0.47 -5.37 10.26 -9.29 -0.10 -5.46 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.04 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.15 1.85 6.32 -52.49 -0.33 1.52 16 32 H 0.42 4.10 8.30 -40.82 -0.34 3.76 16 33 H 0.12 2.21 4.33 -54.71 -0.24 1.97 16 34 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 35 H 0.11 2.71 6.03 -51.93 -0.31 2.40 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.35 7.00 -51.93 -0.36 0.99 16 43 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -29.91 351.71 -8.11 -38.02 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.77 Total: 5.15 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.73 Total: 0.05 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.04 Total: -47.38 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.15 Total: -17.02 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.91 -8.11 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543825072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.202 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds