Wall clock time and date at job start Tue Mar 31 2020 11:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.53707 * 2 1 4 4 C 1.38483 * 119.24585 * 179.97438 * 3 2 1 5 5 C 1.39341 * 118.35364 * 0.02562 * 4 3 2 6 6 N 1.39753 * 120.49083 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00290 * 325.27903 * 6 5 4 8 8 O 1.21384 * 120.00158 * 3.96191 * 7 6 5 9 9 C 1.49351 * 120.00107 * 183.96736 * 7 6 5 10 10 O 1.21358 * 119.99965 * 353.42783 * 9 7 6 11 11 N 1.34778 * 120.00295 * 173.70882 * 9 7 6 12 12 C 1.46928 * 120.62599 * 350.84105 * 11 9 7 13 13 C 1.52760 * 109.00681 * 233.58311 * 12 11 9 14 14 C 1.53036 * 109.38404 * 305.58923 * 13 12 11 15 15 C 1.50708 * 109.44702 * 181.25159 * 14 13 12 16 16 H 1.07997 * 119.99792 * 239.93782 * 15 14 13 17 17 C 1.37883 * 119.99763 * 59.94498 * 15 14 13 18 18 N 1.31511 * 120.00106 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47050 * 59.99914 * 19 17 15 21 21 H 1.48498 * 109.46632 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47130 * 299.99785 * 19 17 15 23 23 C 1.53036 * 109.53779 * 61.24326 * 14 13 12 24 24 C 1.46920 * 120.63512 * 171.12491 * 11 9 7 25 25 C 1.38901 * 119.01278 * 0.27269 * 5 4 3 26 26 N 1.31813 * 120.65462 * 359.42797 * 25 5 4 27 27 H 1.08993 * 109.46832 * 89.99802 * 1 2 3 28 28 H 1.09001 * 109.46737 * 210.00113 * 1 2 3 29 29 H 1.09000 * 109.46474 * 329.99599 * 1 2 3 30 30 H 1.08002 * 120.37293 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.82624 * 180.02562 * 4 3 2 32 32 H 0.97000 * 119.99688 * 145.27469 * 6 5 4 33 33 H 1.08997 * 109.59224 * 353.42289 * 12 11 9 34 34 H 1.09010 * 109.58481 * 113.84702 * 12 11 9 35 35 H 1.09000 * 109.56165 * 185.55736 * 13 12 11 36 36 H 1.08995 * 109.35931 * 65.50304 * 13 12 11 37 37 H 1.08999 * 109.46455 * 301.22075 * 14 13 12 38 38 H 0.96995 * 120.00372 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.49786 * 178.68348 * 23 14 13 40 40 H 1.09003 * 109.52587 * 58.59756 * 23 14 13 41 41 H 1.09002 * 109.58878 * 246.15690 * 24 11 9 42 42 H 1.09005 * 109.58453 * 6.43362 * 24 11 9 43 43 H 1.08004 * 119.66924 * 179.73320 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2031 0.0000 4 6 3.5736 1.1961 0.0005 5 6 4.2291 -0.0335 0.0005 6 7 5.6253 -0.0927 0.0005 7 6 6.3393 0.8372 -0.6642 8 8 5.7735 1.7664 -1.2026 9 6 7.8267 0.7243 -0.7387 10 8 8.4026 -0.1344 -0.1033 11 7 8.5299 1.5797 -1.5070 12 6 7.8436 2.4951 -2.4289 13 6 8.4262 2.3194 -3.8300 14 6 9.9446 2.5031 -3.7755 15 6 10.5174 2.3605 -5.1622 16 1 11.2446 1.5894 -5.3693 17 6 10.1130 3.2146 -6.1662 18 7 9.2272 4.1533 -5.9140 19 14 10.8236 3.0383 -7.8848 20 1 10.5085 1.6872 -8.4145 21 1 10.2298 4.0689 -8.7739 22 1 12.2966 3.2183 -7.8323 23 6 10.5561 1.4405 -2.8596 24 6 9.9974 1.6101 -1.4433 25 6 3.4741 -1.1994 -0.0058 26 7 2.1570 -1.1473 -0.0004 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3632 0.8900 0.5139 30 1 1.6473 2.1376 0.0004 31 1 4.1317 2.1207 0.0010 32 1 6.0806 -0.8031 0.4790 33 1 6.7782 2.2656 -2.4462 34 1 7.9926 3.5239 -2.1006 35 1 7.9939 3.0619 -4.5008 36 1 8.1937 1.3192 -4.1952 37 1 10.1767 3.4946 -3.3869 38 1 8.9425 4.7539 -6.6204 39 1 11.6397 1.5573 -2.8396 40 1 10.3039 0.4482 -3.2337 41 1 10.3256 2.5651 -1.0330 42 1 10.3525 0.7983 -0.8084 43 1 3.9712 -2.1582 -0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543825072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:41 Heat of formation + Delta-G solvation = -39.332510 kcal Electronic energy + Delta-G solvation = -26198.038959 eV Core-core repulsion = 22435.873309 eV Total energy + Delta-G solvation = -3762.165649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.48285 -41.24463 -39.86476 -38.66358 -36.71553 -35.30193 -33.34465 -33.06269 -32.76233 -31.81207 -28.85800 -28.09349 -26.13333 -24.77769 -24.28583 -24.01183 -22.80608 -21.63389 -20.67770 -19.19562 -18.53506 -18.43901 -17.73212 -17.50570 -17.26564 -16.88772 -16.50659 -16.22686 -15.56786 -15.45580 -15.19061 -14.99210 -14.76425 -14.66788 -14.46343 -14.15929 -13.99134 -13.46402 -13.42540 -13.20285 -13.09030 -12.96825 -12.81369 -12.55002 -12.41383 -12.16772 -12.04468 -11.88048 -11.53004 -11.12755 -11.03085 -10.74778 -10.67064 -10.44048 -10.09544 -9.74792 -9.36209 -8.08533 -6.22145 -0.27452 0.20720 0.38322 1.09256 1.42005 1.42590 1.49982 1.93552 2.30688 2.43269 2.72611 3.05656 3.18164 3.41330 3.77220 3.83091 3.98244 4.06117 4.17531 4.26371 4.29543 4.46692 4.54191 4.57860 4.70784 4.76293 4.82193 4.84423 4.90928 4.97591 5.07401 5.13264 5.16668 5.18322 5.26432 5.35531 5.43052 5.61504 5.69044 5.83196 5.96028 6.08391 6.18891 6.37103 6.51117 6.73857 6.87996 6.92280 7.45677 8.94889 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.002933 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.433852 B = 9544.697822 C =10525.322546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.103 3.897 3 C -0.152 4.152 4 C -0.086 4.086 5 C 0.070 3.930 6 N -0.625 5.625 7 C 0.514 3.486 8 O -0.504 6.504 9 C 0.507 3.493 10 O -0.544 6.544 11 N -0.567 5.567 12 C 0.084 3.916 13 C -0.114 4.114 14 C 0.043 3.957 15 C -0.535 4.535 16 H 0.051 0.949 17 C 0.015 3.985 18 N -0.913 5.913 19 Si 0.950 3.050 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.114 4.114 24 C 0.112 3.888 25 C 0.089 3.911 26 N -0.487 5.487 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.164 0.836 31 H 0.143 0.857 32 H 0.434 0.566 33 H 0.127 0.873 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.023 0.977 37 H 0.005 0.995 38 H 0.261 0.739 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.971 -6.744 14.587 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.035 4.035 3 C -0.172 4.172 4 C -0.113 4.113 5 C -0.026 4.026 6 N -0.273 5.273 7 C 0.297 3.703 8 O -0.380 6.380 9 C 0.289 3.711 10 O -0.423 6.423 11 N -0.299 5.299 12 C -0.037 4.037 13 C -0.153 4.153 14 C 0.024 3.976 15 C -0.573 4.573 16 H 0.069 0.931 17 C -0.184 4.184 18 N -0.553 5.553 19 Si 0.776 3.224 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.152 4.152 24 C -0.009 4.009 25 C -0.070 4.070 26 N -0.197 5.197 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.275 0.725 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.567 -7.146 14.435 21.717 hybrid contribution 1.462 0.682 -1.120 1.964 sum -13.104 -6.464 13.316 19.769 Atomic orbital electron populations 1.20786 0.86424 1.04574 1.03936 1.21879 0.98771 0.88021 0.94805 1.22196 0.93493 1.00607 1.00858 1.21891 0.95436 0.97854 0.96163 1.18922 0.82814 0.96084 1.04806 1.42903 1.04254 1.30086 1.50007 1.20278 0.88398 0.82822 0.78776 1.90561 1.71638 1.31991 1.43780 1.19822 0.87751 0.82214 0.81290 1.90717 1.71335 1.34154 1.46108 1.48187 1.08052 1.35853 1.37783 1.22722 0.99829 0.92490 0.88686 1.21734 0.98994 0.99810 0.94758 1.18649 0.92115 0.93376 0.93441 1.21528 1.24171 1.15626 0.95950 0.93113 1.25681 0.95451 0.94993 1.02260 1.69952 1.32111 1.19193 1.34000 0.85743 0.78850 0.77657 0.80180 1.20078 1.20998 1.19678 1.21861 1.00249 0.99330 0.93767 1.21890 0.77382 1.03350 0.98277 1.22944 0.89295 0.97551 0.97244 1.67596 1.08869 1.30054 1.13147 0.89649 0.90418 0.88490 0.81813 0.83941 0.72540 0.85601 0.91795 0.90436 0.95799 0.97682 0.92966 0.90875 0.93649 0.89995 0.88490 0.80161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.17 71.24 0.72 -0.42 16 2 C 0.10 1.89 6.78 42.57 0.29 2.18 16 3 C -0.15 -2.72 9.73 22.34 0.22 -2.50 16 4 C -0.09 -1.90 8.80 22.59 0.20 -1.70 16 5 C 0.07 1.52 6.32 38.30 0.24 1.76 16 6 N -0.62 -13.73 5.34 -304.52 -1.63 -15.36 16 7 C 0.51 14.54 7.59 87.24 0.66 15.20 16 8 O -0.50 -15.94 10.67 -3.35 -0.04 -15.97 16 9 C 0.51 16.13 7.73 87.24 0.67 16.81 16 10 O -0.54 -17.89 15.92 -3.27 -0.05 -17.94 16 11 N -0.57 -19.71 2.98 -821.43 -2.45 -22.16 16 12 C 0.08 3.19 5.94 86.22 0.51 3.70 16 13 C -0.11 -5.29 5.14 30.53 0.16 -5.14 16 14 C 0.04 2.06 2.07 -11.51 -0.02 2.04 16 15 C -0.53 -28.82 8.56 25.60 0.22 -28.61 16 16 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 17 C 0.02 0.82 5.30 84.66 0.45 1.27 16 18 N -0.91 -51.40 11.30 21.45 0.24 -51.16 16 19 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 C -0.11 -4.50 5.30 30.67 0.16 -4.34 16 24 C 0.11 3.76 6.45 86.36 0.56 4.32 16 25 C 0.09 1.77 11.13 84.85 0.94 2.71 16 26 N -0.49 -10.40 10.26 -183.32 -1.88 -12.28 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.67 8.08 -2.39 -0.02 0.65 16 30 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 31 H 0.14 3.41 6.32 -2.91 -0.02 3.39 16 32 H 0.43 7.67 8.30 -92.71 -0.77 6.90 16 33 H 0.13 4.70 4.33 -46.33 -0.20 4.50 16 34 H 0.06 2.43 8.14 -2.38 -0.02 2.42 16 35 H 0.08 4.07 6.03 -2.39 -0.01 4.05 16 36 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.01 0.26 8.14 -2.39 -0.02 0.25 16 38 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.10 3.00 7.00 -2.38 -0.02 2.98 16 43 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -64.06 351.71 2.30 -61.77 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.09 Total: 20.69 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.98 Total: 7.28 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -5.71 Total: -100.95 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.09 Total: -33.92 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -64.06 2.30 -61.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543825072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.433 kcal (2) G-P(sol) polarization free energy of solvation -64.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds