Wall clock time and date at job start Tue Mar 31 2020 11:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53044 * 109.46082 * 300.02791 * 9 7 2 11 11 C 1.53191 * 109.31319 * 178.60281 * 10 9 7 12 12 N 1.46924 * 108.76866 * 54.65211 * 11 10 9 13 13 S 1.65603 * 120.63100 * 126.40409 * 12 11 10 14 14 O 1.42101 * 104.27643 * 26.05275 * 13 12 11 15 15 O 1.42097 * 104.27715 * 153.91453 * 13 12 11 16 16 C 1.81405 * 104.45038 * 269.98359 * 13 12 11 17 17 C 1.52996 * 109.47146 * 179.97438 * 16 13 12 18 18 C 1.53001 * 109.47293 * 179.97438 * 17 16 13 19 19 H 1.09002 * 110.74540 * 57.02228 * 18 17 16 20 20 C 1.55299 * 110.84765 * 180.71446 * 18 17 16 21 21 C 1.54943 * 100.94194 * 152.32500 * 20 18 17 22 22 O 1.43643 * 105.13595 * 323.55998 * 21 20 18 23 23 C 1.43233 * 109.97596 * 24.42083 * 22 21 20 24 24 C 1.46925 * 118.73870 * 306.39050 * 12 11 10 25 25 C 1.53038 * 109.45909 * 179.97438 * 9 7 2 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46194 * 59.99842 * 9 7 2 28 28 H 1.09002 * 109.50000 * 298.56521 * 10 9 7 29 29 H 1.08999 * 109.49863 * 58.66245 * 10 9 7 30 30 H 1.09002 * 109.59801 * 294.86696 * 11 10 9 31 31 H 1.09000 * 109.59094 * 174.43607 * 11 10 9 32 32 H 1.09001 * 109.46958 * 299.99778 * 16 13 12 33 33 H 1.09000 * 109.47068 * 59.99909 * 16 13 12 34 34 H 1.08998 * 109.47514 * 300.00068 * 17 16 13 35 35 H 1.09000 * 109.47130 * 60.00046 * 17 16 13 36 36 H 1.09005 * 111.12425 * 270.24580 * 20 18 17 37 37 H 1.08998 * 111.12860 * 34.40971 * 20 18 17 38 38 H 1.08998 * 110.31549 * 204.63803 * 21 20 18 39 39 H 1.09003 * 110.39407 * 82.51191 * 21 20 18 40 40 H 1.08993 * 109.83363 * 238.78192 * 23 22 21 41 41 H 1.08996 * 109.90677 * 117.84371 * 23 22 21 42 42 H 1.09003 * 109.58574 * 293.81538 * 24 12 11 43 43 H 1.08999 * 109.70315 * 173.46190 * 24 12 11 44 44 H 1.08995 * 109.49912 * 301.33422 * 25 9 7 45 45 H 1.09002 * 109.49870 * 61.43875 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3712 -2.5799 1.2491 11 6 -0.4194 -3.8919 1.2282 12 7 0.5231 -5.0094 1.0808 13 16 0.5105 -6.2709 2.1536 14 8 -0.8201 -6.2938 2.6520 15 8 1.0348 -7.3651 1.4141 16 6 1.6694 -5.7691 3.4559 17 6 1.7460 -6.8653 4.5205 18 6 2.7240 -6.4424 5.6185 19 1 2.4259 -5.4890 6.0548 20 6 2.8398 -7.5421 6.7089 21 6 4.2759 -7.2875 7.2320 22 8 5.0360 -6.9106 6.0729 23 6 4.1659 -6.3697 5.0719 24 6 1.4766 -4.9866 -0.0368 25 6 2.2457 -3.6622 -0.0018 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5565 -0.8903 28 1 0.9996 -2.5478 2.1392 29 1 -0.3212 -1.7383 1.2615 30 1 -1.1142 -3.8867 0.3883 31 1 -0.9719 -4.0006 2.1615 32 1 2.6574 -5.6132 3.0227 33 1 1.3229 -4.8424 3.9133 34 1 0.7580 -7.0208 4.9536 35 1 2.0923 -7.7922 4.0633 36 1 2.1022 -7.3928 7.4975 37 1 2.7510 -8.5376 6.2740 38 1 4.6846 -8.1964 7.6734 39 1 4.2760 -6.4794 7.9635 40 1 4.2446 -6.9570 4.1571 41 1 4.4327 -5.3325 4.8694 42 1 0.9364 -5.0707 -0.9798 43 1 2.1754 -5.8176 0.0594 44 1 2.8876 -3.5910 -0.8799 45 1 2.8563 -3.6198 0.9002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549406162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:54 Heat of formation + Delta-G solvation = -135.729079 kcal Electronic energy + Delta-G solvation = -25744.388125 eV Core-core repulsion = 22081.193608 eV Total energy + Delta-G solvation = -3663.194518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.77112 -37.77597 -36.99071 -35.79628 -35.10583 -33.45719 -31.19784 -30.90129 -30.12372 -28.78188 -25.81530 -24.53514 -22.61957 -22.42647 -22.28348 -20.79238 -19.42208 -18.41234 -17.49295 -17.16068 -16.56638 -16.21924 -15.95354 -15.83440 -15.07065 -14.61861 -14.57385 -14.03927 -13.76119 -13.50596 -13.41564 -13.15169 -12.90707 -12.83960 -12.74986 -12.24954 -12.16392 -11.97103 -11.90092 -11.79112 -11.73423 -11.39009 -11.11405 -10.99680 -10.98039 -10.92333 -10.73199 -10.46565 -10.40005 -10.10266 -9.77480 -9.63576 -9.23930 -9.02263 -8.44388 -8.27278 -6.05218 -4.11969 0.40859 2.85659 3.26953 3.32550 3.34808 3.59178 3.88527 4.06220 4.23407 4.36175 4.38170 4.54239 4.57892 4.81075 4.88497 4.94503 5.08925 5.17457 5.24471 5.26964 5.36183 5.39866 5.55168 5.56892 5.59362 5.70309 5.73197 5.87021 5.89213 6.06181 6.12333 6.30462 6.39101 6.40996 6.68307 6.72119 6.86029 7.02917 7.12027 7.36752 7.66302 7.90145 8.03303 8.37387 8.91734 9.53315 11.00058 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.003812 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.781207 B = 7343.174815 C = 8606.359153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.051 3.949 10 C -0.125 4.125 11 C 0.119 3.881 12 N -0.991 5.991 13 S 2.608 3.392 14 O -0.960 6.960 15 O -0.963 6.963 16 C -0.638 4.638 17 C -0.100 4.100 18 C -0.115 4.115 19 H 0.092 0.908 20 C -0.156 4.156 21 C 0.050 3.950 22 O -0.385 6.385 23 C 0.051 3.949 24 C 0.122 3.878 25 C -0.125 4.125 26 H 0.261 0.739 27 H 0.028 0.972 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 -13.109 11.195 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.032 3.968 10 C -0.164 4.164 11 C -0.005 4.005 12 N -0.830 5.830 13 S 2.701 3.299 14 O -0.951 6.951 15 O -0.953 6.953 16 C -0.766 4.766 17 C -0.138 4.138 18 C -0.134 4.134 19 H 0.111 0.889 20 C -0.194 4.194 21 C -0.026 4.026 22 O -0.305 6.305 23 C -0.026 4.026 24 C -0.003 4.003 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.018 -13.782 11.067 17.932 hybrid contribution 0.722 1.669 0.319 1.846 sum 3.740 -12.113 11.386 17.040 Atomic orbital electron populations 1.69831 1.05837 1.26599 1.50640 1.24962 0.94850 0.99022 0.95103 0.86694 0.79628 0.83289 0.78567 1.21328 1.20401 1.20330 1.21178 0.92855 0.90660 1.50601 0.92800 1.18578 0.92592 0.91437 0.94166 1.22042 1.00022 0.95020 0.99348 1.21706 0.90830 0.86711 1.01300 1.57584 1.46404 1.39101 1.39885 1.04992 0.75561 0.74068 0.75290 1.93569 1.33344 1.86392 1.81762 1.93560 1.81877 1.51111 1.68777 1.30804 1.19335 1.09601 1.16906 1.21272 1.01078 0.96714 0.94785 1.22699 0.95303 0.99903 0.95527 0.88948 1.23376 0.97675 0.99661 0.98641 1.23362 0.90452 0.99983 0.88809 1.88407 1.33161 1.82697 1.26227 1.23295 0.88141 0.99375 0.91781 1.21514 0.90902 0.99067 0.88831 1.22036 0.98859 0.94694 1.00826 0.92889 0.95365 0.94453 0.87854 0.91590 0.90997 0.84904 0.84580 0.89845 0.90106 0.89566 0.89945 0.89753 0.92131 0.90811 0.90916 0.91504 0.90723 0.92131 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 11.31 55.43 0.63 -23.44 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.51 -13.23 8.56 -34.44 -0.29 -13.53 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 9 C 0.05 1.15 2.06 -91.73 -0.19 0.97 16 10 C -0.12 -2.64 5.15 -26.61 -0.14 -2.77 16 11 C 0.12 2.13 6.31 -3.71 -0.02 2.11 16 12 N -0.99 -16.15 3.22 -113.52 -0.37 -16.51 16 13 S 2.61 38.03 5.41 -107.50 -0.58 37.45 16 14 O -0.96 -16.40 16.72 -57.54 -0.96 -17.36 16 15 O -0.96 -16.02 16.73 -57.54 -0.96 -16.98 16 16 C -0.64 -6.96 6.02 37.16 0.22 -6.74 16 17 C -0.10 -0.95 4.61 -26.73 -0.12 -1.07 16 18 C -0.11 -1.01 3.03 -88.68 -0.27 -1.28 16 19 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.16 -1.16 6.62 -24.49 -0.16 -1.32 16 21 C 0.05 0.42 7.78 38.18 0.30 0.71 16 22 O -0.39 -4.44 11.36 -35.23 -0.40 -4.84 16 23 C 0.05 0.52 6.57 37.88 0.25 0.76 16 24 C 0.12 1.98 6.31 -3.71 -0.02 1.96 16 25 C -0.13 -2.32 5.30 -26.61 -0.14 -2.46 16 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.10 2.48 6.04 -51.93 -0.31 2.17 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.18 7.10 -51.93 -0.37 0.81 16 32 H 0.13 1.32 7.48 -51.92 -0.39 0.93 16 33 H 0.14 1.38 8.14 -51.92 -0.42 0.96 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.72 8.07 -51.93 -0.42 0.31 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.73 7.73 -51.93 -0.40 0.33 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.07 7.11 -51.93 -0.37 0.70 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -31.17 362.69 -10.60 -41.77 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.71 Total: 0.16 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -0.69 Total: -21.14 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.26 Total: -39.96 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -2.32 Total: -39.18 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 38.03 SS G_CDS: -0.58 Total: 37.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.17 -10.60 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549406162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.956 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds