Wall clock time and date at job start Tue Mar 31 2020 11:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53044 * 109.46082 * 300.02791 * 9 7 2 11 11 C 1.53191 * 109.31319 * 178.60281 * 10 9 7 12 12 N 1.46924 * 108.76866 * 54.65211 * 11 10 9 13 13 S 1.65603 * 120.63100 * 126.40409 * 12 11 10 14 14 O 1.42101 * 104.27643 * 26.05275 * 13 12 11 15 15 O 1.42097 * 104.27715 * 153.91453 * 13 12 11 16 16 C 1.81405 * 104.45038 * 269.98359 * 13 12 11 17 17 C 1.52996 * 109.47146 * 179.97438 * 16 13 12 18 18 C 1.53001 * 109.47293 * 179.97438 * 17 16 13 19 19 H 1.09002 * 110.74540 * 57.02228 * 18 17 16 20 20 C 1.55299 * 110.84765 * 180.71446 * 18 17 16 21 21 C 1.54943 * 100.94194 * 152.32500 * 20 18 17 22 22 O 1.43643 * 105.13595 * 323.55998 * 21 20 18 23 23 C 1.43233 * 109.97596 * 24.42083 * 22 21 20 24 24 C 1.46925 * 118.73870 * 306.39050 * 12 11 10 25 25 C 1.53038 * 109.45909 * 179.97438 * 9 7 2 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46194 * 59.99842 * 9 7 2 28 28 H 1.09002 * 109.50000 * 298.56521 * 10 9 7 29 29 H 1.08999 * 109.49863 * 58.66245 * 10 9 7 30 30 H 1.09002 * 109.59801 * 294.86696 * 11 10 9 31 31 H 1.09000 * 109.59094 * 174.43607 * 11 10 9 32 32 H 1.09001 * 109.46958 * 299.99778 * 16 13 12 33 33 H 1.09000 * 109.47068 * 59.99909 * 16 13 12 34 34 H 1.08998 * 109.47514 * 300.00068 * 17 16 13 35 35 H 1.09000 * 109.47130 * 60.00046 * 17 16 13 36 36 H 1.09005 * 111.12425 * 270.24580 * 20 18 17 37 37 H 1.08998 * 111.12860 * 34.40971 * 20 18 17 38 38 H 1.08998 * 110.31549 * 204.63803 * 21 20 18 39 39 H 1.09003 * 110.39407 * 82.51191 * 21 20 18 40 40 H 1.08993 * 109.83363 * 238.78192 * 23 22 21 41 41 H 1.08996 * 109.90677 * 117.84371 * 23 22 21 42 42 H 1.09003 * 109.58574 * 293.81538 * 24 12 11 43 43 H 1.08999 * 109.70315 * 173.46190 * 24 12 11 44 44 H 1.08995 * 109.49912 * 301.33422 * 25 9 7 45 45 H 1.09002 * 109.49870 * 61.43875 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3712 -2.5799 1.2491 11 6 -0.4194 -3.8919 1.2282 12 7 0.5231 -5.0094 1.0808 13 16 0.5105 -6.2709 2.1536 14 8 -0.8201 -6.2938 2.6520 15 8 1.0348 -7.3651 1.4141 16 6 1.6694 -5.7691 3.4559 17 6 1.7460 -6.8653 4.5205 18 6 2.7240 -6.4424 5.6185 19 1 2.4259 -5.4890 6.0548 20 6 2.8398 -7.5421 6.7089 21 6 4.2759 -7.2875 7.2320 22 8 5.0360 -6.9106 6.0729 23 6 4.1659 -6.3697 5.0719 24 6 1.4766 -4.9866 -0.0368 25 6 2.2457 -3.6622 -0.0018 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5565 -0.8903 28 1 0.9996 -2.5478 2.1392 29 1 -0.3212 -1.7383 1.2615 30 1 -1.1142 -3.8867 0.3883 31 1 -0.9719 -4.0006 2.1615 32 1 2.6574 -5.6132 3.0227 33 1 1.3229 -4.8424 3.9133 34 1 0.7580 -7.0208 4.9536 35 1 2.0923 -7.7922 4.0633 36 1 2.1022 -7.3928 7.4975 37 1 2.7510 -8.5376 6.2740 38 1 4.6846 -8.1964 7.6734 39 1 4.2760 -6.4794 7.9635 40 1 4.2446 -6.9570 4.1571 41 1 4.4327 -5.3325 4.8694 42 1 0.9364 -5.0707 -0.9798 43 1 2.1754 -5.8176 0.0594 44 1 2.8876 -3.5910 -0.8799 45 1 2.8563 -3.6198 0.9002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549406162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:53 Heat of formation + Delta-G solvation = -156.182099 kcal Electronic energy + Delta-G solvation = -25745.275035 eV Core-core repulsion = 22081.193608 eV Total energy + Delta-G solvation = -3664.081427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46359 -39.28025 -38.23446 -37.03652 -35.88689 -35.24537 -32.59205 -31.89334 -31.65919 -29.51448 -27.60955 -25.37232 -24.10395 -23.87950 -23.09325 -21.54482 -20.87170 -19.71365 -18.83082 -18.17132 -17.87586 -17.47973 -17.11365 -16.69878 -16.50484 -15.85606 -15.52539 -15.18962 -14.98349 -14.85448 -14.51796 -14.41751 -14.33607 -14.09404 -13.65517 -13.57382 -13.43844 -13.21836 -13.03475 -12.87117 -12.76396 -12.55158 -12.50445 -12.42894 -12.36138 -12.04793 -11.84417 -11.71585 -11.67435 -11.49904 -11.36011 -10.90126 -10.75218 -10.49468 -10.35033 -9.76532 -8.03734 -6.17173 -0.73138 1.44197 1.45411 1.52018 1.64293 2.46322 2.82154 2.95721 3.14303 3.23030 3.31464 3.60590 3.77643 3.83818 3.89221 3.99931 4.27355 4.31838 4.34728 4.41852 4.44048 4.53303 4.55842 4.67192 4.71403 4.78457 4.79335 4.83941 4.88905 4.90038 4.96844 4.98229 5.03228 5.16404 5.26741 5.35453 5.39363 5.59276 5.67776 5.74876 6.04325 6.06382 6.23739 6.44092 6.95198 7.50954 8.99236 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.003812 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.781207 B = 7343.174815 C = 8606.359153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.947 3.053 4 H -0.288 1.288 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.045 3.955 10 C -0.116 4.116 11 C 0.129 3.871 12 N -0.997 5.997 13 S 2.613 3.387 14 O -0.988 6.988 15 O -0.985 6.985 16 C -0.616 4.616 17 C -0.106 4.106 18 C -0.111 4.111 19 H 0.099 0.901 20 C -0.151 4.151 21 C 0.042 3.958 22 O -0.412 6.412 23 C 0.043 3.957 24 C 0.124 3.876 25 C -0.117 4.117 26 H 0.259 0.741 27 H -0.006 1.006 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 -13.919 12.849 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.214 1.214 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.156 4.156 11 C 0.003 3.997 12 N -0.834 5.834 13 S 2.711 3.289 14 O -0.979 6.979 15 O -0.975 6.975 16 C -0.748 4.748 17 C -0.145 4.145 18 C -0.131 4.131 19 H 0.117 0.883 20 C -0.189 4.189 21 C -0.033 4.033 22 O -0.332 6.332 23 C -0.033 4.033 24 C -0.001 4.001 25 C -0.156 4.156 26 H 0.068 0.932 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.068 -14.611 12.682 19.770 hybrid contribution 0.438 1.890 -0.155 1.947 sum 4.506 -12.721 12.527 18.413 Atomic orbital electron populations 1.69977 1.06977 1.27000 1.51511 1.25659 0.95571 1.02000 0.95125 0.85792 0.78456 0.79775 0.78651 1.21392 1.19704 1.20107 1.21585 0.93060 0.92163 1.50084 0.92919 1.18575 0.93165 0.92223 0.93431 1.21820 0.99410 0.95622 0.98722 1.21445 0.90593 0.85868 1.01745 1.57555 1.46283 1.38575 1.41011 1.04772 0.75520 0.73158 0.75450 1.93532 1.35788 1.86548 1.82004 1.93530 1.82053 1.51896 1.70058 1.30589 1.18213 1.10700 1.15313 1.21418 1.02121 0.96358 0.94613 1.22675 0.94055 1.00816 0.95549 0.88285 1.23396 0.97521 0.99346 0.98635 1.23571 0.90843 1.00816 0.88121 1.88376 1.34580 1.82944 1.27341 1.23389 0.88926 0.99221 0.91810 1.21493 0.91092 0.98606 0.88937 1.21907 0.98088 0.94109 1.01521 0.93154 0.98824 0.93749 0.91083 0.92826 0.89279 0.83376 0.83160 0.88707 0.89484 0.87712 0.89530 0.88583 0.91451 0.90823 0.91149 0.92004 0.88124 0.91931 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.56 11.31 21.45 0.24 -50.31 16 2 C 0.02 0.80 5.30 84.66 0.45 1.25 16 3 Si 0.95 42.01 29.54 68.60 2.03 44.03 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.53 -27.45 8.56 25.60 0.22 -27.23 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.04 2.06 2.06 -11.51 -0.02 2.03 16 10 C -0.12 -4.93 5.15 30.67 0.16 -4.78 16 11 C 0.13 4.58 6.31 86.36 0.55 5.12 16 12 N -1.00 -31.28 3.22 -513.07 -1.65 -32.94 16 13 S 2.61 71.27 5.41 -56.49 -0.31 70.96 16 14 O -0.99 -32.31 16.72 -127.65 -2.13 -34.45 16 15 O -0.98 -30.97 16.73 -127.65 -2.14 -33.11 16 16 C -0.62 -11.53 6.02 71.98 0.43 -11.10 16 17 C -0.11 -1.68 4.61 30.59 0.14 -1.54 16 18 C -0.11 -1.63 3.03 -9.53 -0.03 -1.65 16 19 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 20 C -0.15 -1.78 6.62 32.05 0.21 -1.57 16 21 C 0.04 0.60 7.78 72.65 0.56 1.17 16 22 O -0.41 -8.79 11.36 -148.98 -1.69 -10.48 16 23 C 0.04 0.78 6.57 72.45 0.48 1.26 16 24 C 0.12 3.87 6.31 86.36 0.54 4.42 16 25 C -0.12 -4.23 5.30 30.67 0.16 -4.07 16 26 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 27 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 3.50 6.04 -2.39 -0.01 3.49 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.85 7.10 -2.39 -0.02 2.83 16 32 H 0.15 2.43 7.48 -2.39 -0.02 2.41 16 33 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.30 8.07 -2.39 -0.02 1.28 16 36 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.09 0.96 8.04 -2.39 -0.02 0.94 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.30 7.73 -2.39 -0.02 1.28 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.10 2.65 7.11 -2.39 -0.02 2.63 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -67.18 362.69 -0.85 -68.03 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.95 Total: 14.96 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 3.85 Total: -36.70 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.41 Total: -83.25 kcal Atomic # 8 Polarization: -72.07 SS G_CDS: -5.96 Total: -78.04 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 71.27 SS G_CDS: -0.31 Total: 70.96 kcal Total: -67.18 -0.85 -68.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549406162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.154 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds