Wall clock time and date at job start Tue Mar 31 2020 11:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.99784 * 2 1 4 4 C 1.38210 * 120.00022 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99854 * 359.81258 * 4 3 2 6 6 C 1.38214 * 119.99872 * 0.44121 * 5 4 3 7 7 C 1.50709 * 119.99775 * 179.79208 * 6 5 4 8 8 H 1.08994 * 109.38289 * 26.01828 * 7 6 5 9 9 C 1.50253 * 109.38303 * 145.71248 * 7 6 5 10 10 O 1.21277 * 118.62661 * 317.35015 * 9 7 6 11 11 N 1.33718 * 122.74915 * 137.33691 * 9 7 6 12 12 C 1.46076 * 122.98116 * 358.51341 * 11 9 7 13 13 C 1.52984 * 110.01284 * 17.83292 * 12 11 9 14 14 N 1.46901 * 109.38102 * 266.22816 * 7 6 5 15 15 C 1.46903 * 111.00309 * 312.91130 * 14 7 6 16 16 C 1.50691 * 109.47084 * 171.66323 * 15 14 7 17 17 O 1.21289 * 120.00522 * 352.60492 * 16 15 14 18 18 N 1.34781 * 119.99902 * 172.59914 * 16 15 14 19 19 C 1.37102 * 119.99885 * 180.02562 * 18 16 15 20 20 H 1.07992 * 120.00333 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99501 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00598 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47006 * 90.00206 * 23 21 19 25 25 H 1.48496 * 109.47347 * 210.00739 * 23 21 19 26 26 H 1.48504 * 109.46610 * 330.00515 * 23 21 19 27 27 C 1.38204 * 120.00345 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47494 * 269.97623 * 1 2 3 29 29 H 1.08998 * 109.47473 * 29.98377 * 1 2 3 30 30 H 1.09005 * 109.47119 * 149.98143 * 1 2 3 31 31 H 1.08004 * 120.00149 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.99922 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.00023 * 180.23293 * 5 4 3 34 34 H 0.96995 * 118.53668 * 178.35492 * 11 9 7 35 35 H 1.08997 * 109.24596 * 257.75032 * 12 11 9 36 36 H 1.08999 * 109.52861 * 138.08456 * 12 11 9 37 37 H 1.08996 * 109.58935 * 190.11094 * 13 12 11 38 38 H 1.09002 * 109.59610 * 69.80682 * 13 12 11 39 39 H 1.09002 * 109.46906 * 291.66686 * 15 14 7 40 40 H 1.09002 * 109.46817 * 51.66334 * 15 14 7 41 41 H 0.97002 * 119.99847 * 0.02562 * 18 16 15 42 42 H 0.97004 * 120.00628 * 179.97438 * 22 21 19 43 43 H 1.08000 * 119.99979 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0002 0.0050 6 6 3.5806 -1.1968 -0.0003 7 6 4.3342 -2.5020 -0.0002 8 1 5.3135 -2.3542 0.4550 9 6 3.5663 -3.5211 0.7931 10 8 3.0631 -3.1814 1.8429 11 7 3.4143 -4.7869 0.3898 12 6 3.9522 -5.2896 -0.8719 13 6 5.0319 -4.3408 -1.3958 14 7 4.5044 -2.9667 -1.3833 15 6 3.2403 -2.8813 -2.1268 16 6 3.4944 -3.1681 -3.5842 17 8 4.6313 -3.2863 -3.9899 18 7 2.4582 -3.2935 -4.4370 19 6 2.6894 -3.5550 -5.7628 20 1 3.7016 -3.6609 -6.1239 21 6 1.6211 -3.6847 -6.6418 22 7 0.3893 -3.5563 -6.2025 23 14 1.9359 -4.0403 -8.4485 24 1 1.9706 -5.5090 -8.6652 25 1 0.8495 -3.4446 -9.2669 26 1 3.2382 -3.4498 -8.8495 27 6 2.1981 -1.1968 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6582 2.1327 -0.0004 32 1 4.1203 2.1328 0.0001 33 1 5.3517 0.0002 0.0092 34 1 2.9269 -5.4001 0.9618 35 1 3.1469 -5.3600 -1.6031 36 1 4.3842 -6.2780 -0.7158 37 1 5.3007 -4.6199 -2.4145 38 1 5.9124 -4.4002 -0.7560 39 1 2.5355 -3.6120 -1.7301 40 1 2.8235 -1.8797 -2.0209 41 1 1.5490 -3.1987 -4.1126 42 1 -0.3565 -3.6465 -6.8162 43 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564101563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:44 Heat of formation + Delta-G solvation = -25.888442 kcal Electronic energy + Delta-G solvation = -27458.971413 eV Core-core repulsion = 23697.388742 eV Total energy + Delta-G solvation = -3761.582671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24423 -38.92437 -38.35248 -36.78635 -34.61732 -33.92241 -32.66473 -31.36085 -31.28098 -28.91875 -28.58134 -26.81632 -25.29262 -24.32143 -22.93354 -22.11547 -20.85221 -19.71466 -18.59364 -17.79350 -17.32650 -16.87424 -16.51178 -16.00583 -15.67517 -15.46393 -14.91177 -14.55510 -14.46058 -14.26452 -13.76477 -13.63573 -13.56703 -13.33520 -13.03559 -12.99195 -12.68324 -12.28258 -12.17086 -12.08198 -11.77156 -11.53289 -11.42415 -11.20281 -11.03529 -10.98199 -10.80427 -10.42225 -10.33006 -10.24824 -9.51879 -9.16217 -8.73411 -8.53253 -8.42946 -8.03409 -7.95370 -6.44866 -3.85972 1.38285 1.50757 2.53456 3.11732 3.15082 3.24460 3.30042 3.70031 3.85580 4.02022 4.20900 4.44258 4.55694 4.86434 4.89329 4.96413 5.01896 5.08887 5.18671 5.21947 5.34669 5.37730 5.42455 5.55156 5.58222 5.66286 5.70592 5.84096 5.88656 5.95061 6.07836 6.16617 6.20409 6.23266 6.51837 6.60698 6.63799 6.68613 6.97860 7.00740 7.09983 7.20755 7.51950 8.01973 8.12213 8.57265 9.14266 9.50076 10.01209 10.72651 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.004525 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.956695 B = 6185.933205 C = 7254.006940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.063 4.063 7 C 0.111 3.889 8 H 0.123 0.877 9 C 0.492 3.508 10 O -0.545 6.545 11 N -0.720 5.720 12 C 0.066 3.934 13 C 0.035 3.965 14 N -0.488 5.488 15 C 0.029 3.971 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.562 5.562 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.900 5.900 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.094 4.094 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.397 0.603 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.100 0.900 41 H 0.391 0.609 42 H 0.272 0.728 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 2.585 13.330 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.135 4.135 4 C -0.137 4.137 5 C -0.117 4.117 6 C -0.064 4.064 7 C -0.001 4.001 8 H 0.140 0.860 9 C 0.277 3.723 10 O -0.421 6.421 11 N -0.373 5.373 12 C -0.059 4.059 13 C -0.093 4.093 14 N -0.211 5.211 15 C -0.102 4.102 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.113 4.113 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.233 0.767 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.224 0.776 42 H 0.082 0.918 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.497 3.133 13.094 13.911 hybrid contribution -1.315 -1.074 -0.180 1.707 sum 2.182 2.059 12.914 13.258 Atomic orbital electron populations 1.20785 0.91151 1.03017 1.02121 1.19831 0.96141 0.92890 0.99851 1.21023 0.94322 0.97350 1.00788 1.21051 0.94226 0.97790 1.00608 1.20896 0.99927 0.91440 0.99421 1.19109 0.93217 0.92979 1.01055 1.20908 0.99105 0.90885 0.89162 0.85962 1.21143 0.80727 0.83685 0.86777 1.90742 1.48374 1.78699 1.24291 1.45692 1.57403 1.11271 1.22970 1.22262 0.99017 0.99385 0.85273 1.22756 0.95783 0.85648 1.05119 1.62327 1.27516 1.22544 1.08738 1.22232 0.90507 1.03011 0.94438 1.19583 0.86035 0.84742 0.86587 1.90493 1.21756 1.55747 1.78147 1.41860 1.07575 1.62104 1.08258 1.19691 0.94969 1.45227 0.82981 0.87831 1.25259 0.94640 0.97386 1.00554 1.69609 0.98226 1.49850 1.36466 0.85871 0.78175 0.78514 0.81815 1.20427 1.20932 1.19367 1.20866 0.93342 0.97739 0.99314 0.91337 0.91465 0.91389 0.86182 0.85943 0.85721 0.76733 0.90695 0.89824 0.85762 0.90123 0.93222 0.88183 0.77564 0.91842 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 36.01 0.36 -0.94 16 2 C -0.09 -1.19 5.88 -104.63 -0.62 -1.81 16 3 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 4 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 5 C -0.10 -1.32 9.68 -39.58 -0.38 -1.70 16 6 C -0.06 -0.93 3.83 -104.62 -0.40 -1.33 16 7 C 0.11 1.59 2.71 -70.23 -0.19 1.40 16 8 H 0.12 1.56 8.05 -51.93 -0.42 1.14 16 9 C 0.49 7.21 5.69 -11.67 -0.07 7.14 16 10 O -0.54 -9.48 16.52 5.56 0.09 -9.39 16 11 N -0.72 -8.87 5.35 -61.02 -0.33 -9.19 16 12 C 0.07 0.79 6.44 -4.28 -0.03 0.76 16 13 C 0.03 0.49 5.60 -3.67 -0.02 0.47 16 14 N -0.49 -7.77 4.61 -230.90 -1.07 -8.84 16 15 C 0.03 0.52 3.94 -4.98 -0.02 0.50 16 16 C 0.45 10.07 7.40 -10.99 -0.08 9.99 16 17 O -0.58 -14.68 14.21 5.55 0.08 -14.60 16 18 N -0.56 -13.80 5.29 -10.97 -0.06 -13.86 16 19 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 23 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.09 -1.42 6.04 -39.59 -0.24 -1.66 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 34 H 0.40 4.29 8.84 -40.82 -0.36 3.93 16 35 H 0.07 1.02 6.77 -51.93 -0.35 0.66 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.12 2.06 6.23 -51.93 -0.32 1.74 16 38 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.05 0.83 5.70 -51.93 -0.30 0.54 16 40 H 0.10 1.82 5.27 -51.93 -0.27 1.55 16 41 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.11 1.79 6.91 -52.49 -0.36 1.42 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -31.86 347.91 -8.63 -40.49 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -5.59 Total: 16.47 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.71 Total: 1.41 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.73 Total: -55.18 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.17 Total: -23.98 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.86 -8.63 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564101563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.605 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds