Wall clock time and date at job start Tue Mar 31 2020 11:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.99784 * 2 1 4 4 C 1.38210 * 120.00022 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99854 * 359.81258 * 4 3 2 6 6 C 1.38214 * 119.99872 * 0.44121 * 5 4 3 7 7 C 1.50709 * 119.99775 * 179.79208 * 6 5 4 8 8 H 1.08994 * 109.38289 * 26.01828 * 7 6 5 9 9 C 1.50253 * 109.38303 * 145.71248 * 7 6 5 10 10 O 1.21277 * 118.62661 * 317.35015 * 9 7 6 11 11 N 1.33718 * 122.74915 * 137.33691 * 9 7 6 12 12 C 1.46076 * 122.98116 * 358.51341 * 11 9 7 13 13 C 1.52984 * 110.01284 * 17.83292 * 12 11 9 14 14 N 1.46901 * 109.38102 * 266.22816 * 7 6 5 15 15 C 1.46903 * 111.00309 * 312.91130 * 14 7 6 16 16 C 1.50691 * 109.47084 * 171.66323 * 15 14 7 17 17 O 1.21289 * 120.00522 * 352.60492 * 16 15 14 18 18 N 1.34781 * 119.99902 * 172.59914 * 16 15 14 19 19 C 1.37102 * 119.99885 * 180.02562 * 18 16 15 20 20 H 1.07992 * 120.00333 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99501 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00598 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47006 * 90.00206 * 23 21 19 25 25 H 1.48496 * 109.47347 * 210.00739 * 23 21 19 26 26 H 1.48504 * 109.46610 * 330.00515 * 23 21 19 27 27 C 1.38204 * 120.00345 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47494 * 269.97623 * 1 2 3 29 29 H 1.08998 * 109.47473 * 29.98377 * 1 2 3 30 30 H 1.09005 * 109.47119 * 149.98143 * 1 2 3 31 31 H 1.08004 * 120.00149 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.99922 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.00023 * 180.23293 * 5 4 3 34 34 H 0.96995 * 118.53668 * 178.35492 * 11 9 7 35 35 H 1.08997 * 109.24596 * 257.75032 * 12 11 9 36 36 H 1.08999 * 109.52861 * 138.08456 * 12 11 9 37 37 H 1.08996 * 109.58935 * 190.11094 * 13 12 11 38 38 H 1.09002 * 109.59610 * 69.80682 * 13 12 11 39 39 H 1.09002 * 109.46906 * 291.66686 * 15 14 7 40 40 H 1.09002 * 109.46817 * 51.66334 * 15 14 7 41 41 H 0.97002 * 119.99847 * 0.02562 * 18 16 15 42 42 H 0.97004 * 120.00628 * 179.97438 * 22 21 19 43 43 H 1.08000 * 119.99979 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0002 0.0050 6 6 3.5806 -1.1968 -0.0003 7 6 4.3342 -2.5020 -0.0002 8 1 5.3135 -2.3542 0.4550 9 6 3.5663 -3.5211 0.7931 10 8 3.0631 -3.1814 1.8429 11 7 3.4143 -4.7869 0.3898 12 6 3.9522 -5.2896 -0.8719 13 6 5.0319 -4.3408 -1.3958 14 7 4.5044 -2.9667 -1.3833 15 6 3.2403 -2.8813 -2.1268 16 6 3.4944 -3.1681 -3.5842 17 8 4.6313 -3.2863 -3.9899 18 7 2.4582 -3.2935 -4.4370 19 6 2.6894 -3.5550 -5.7628 20 1 3.7016 -3.6609 -6.1239 21 6 1.6211 -3.6847 -6.6418 22 7 0.3893 -3.5563 -6.2025 23 14 1.9359 -4.0403 -8.4485 24 1 1.9706 -5.5090 -8.6652 25 1 0.8495 -3.4446 -9.2669 26 1 3.2382 -3.4498 -8.8495 27 6 2.1981 -1.1968 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6582 2.1327 -0.0004 32 1 4.1203 2.1328 0.0001 33 1 5.3517 0.0002 0.0092 34 1 2.9269 -5.4001 0.9618 35 1 3.1469 -5.3600 -1.6031 36 1 4.3842 -6.2780 -0.7158 37 1 5.3007 -4.6199 -2.4145 38 1 5.9124 -4.4002 -0.7560 39 1 2.5355 -3.6120 -1.7301 40 1 2.8235 -1.8797 -2.0209 41 1 1.5490 -3.1987 -4.1126 42 1 -0.3565 -3.6465 -6.8162 43 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564101563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:44 Heat of formation + Delta-G solvation = -49.459193 kcal Electronic energy + Delta-G solvation = -27459.993517 eV Core-core repulsion = 23697.388742 eV Total energy + Delta-G solvation = -3762.604775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.41833 -40.09599 -39.90946 -38.17384 -35.96356 -35.62814 -33.70039 -33.26153 -32.43764 -30.13704 -29.90069 -27.80203 -26.93275 -25.69347 -24.15983 -23.21637 -21.88194 -21.28815 -20.17752 -19.49900 -18.53856 -18.12929 -17.61847 -17.43470 -16.90042 -16.66047 -16.39264 -16.15437 -15.69569 -15.63080 -15.21940 -15.10174 -14.67313 -14.63547 -14.27537 -14.01141 -13.92251 -13.60145 -13.42114 -13.29875 -13.06669 -13.03531 -12.82866 -12.59710 -12.41036 -12.29319 -12.11484 -12.00330 -11.88305 -11.53355 -11.44481 -10.32174 -10.22824 -9.99628 -9.71786 -9.54375 -9.27820 -8.44801 -5.93507 0.35350 0.48712 1.38779 1.39178 1.43769 1.56139 2.01965 2.06130 2.28095 2.57260 2.92371 3.21242 3.31556 3.35277 3.53175 3.82804 3.89134 3.99705 4.04849 4.12968 4.17002 4.27746 4.35882 4.46427 4.48177 4.53289 4.58266 4.75616 4.77832 4.79680 4.94889 4.96544 5.10156 5.27791 5.42849 5.51488 5.54087 5.61527 5.65758 5.71779 5.87549 6.03067 6.07782 6.12861 6.59870 7.02561 7.13640 7.55561 8.10023 8.72575 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.004525 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.956695 B = 6185.933205 C = 7254.006940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.082 4.082 7 C 0.115 3.885 8 H 0.141 0.859 9 C 0.494 3.506 10 O -0.575 6.575 11 N -0.709 5.709 12 C 0.073 3.927 13 C 0.033 3.967 14 N -0.499 5.499 15 C 0.050 3.950 16 C 0.449 3.551 17 O -0.605 6.605 18 N -0.572 5.572 19 C -0.328 4.328 20 H 0.084 0.916 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.272 1.272 27 C -0.114 4.114 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.407 0.593 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.392 0.608 42 H 0.277 0.723 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 2.975 13.721 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.129 4.129 6 C -0.082 4.082 7 C 0.004 3.996 8 H 0.158 0.842 9 C 0.279 3.721 10 O -0.454 6.454 11 N -0.362 5.362 12 C -0.052 4.052 13 C -0.095 4.095 14 N -0.223 5.223 15 C -0.081 4.081 16 C 0.236 3.764 17 O -0.491 6.491 18 N -0.209 5.209 19 C -0.458 4.458 20 H 0.102 0.898 21 C -0.212 4.212 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.196 1.196 27 C -0.133 4.133 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.244 0.756 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.226 0.774 42 H 0.086 0.914 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.780 3.497 13.496 14.445 hybrid contribution -1.363 -1.168 -0.254 1.813 sum 2.417 2.328 13.242 13.660 Atomic orbital electron populations 1.20815 0.89956 1.03321 1.02865 1.20163 0.97312 0.93001 0.99672 1.21386 0.94758 0.97914 0.99891 1.21445 0.94435 0.98597 0.99230 1.21204 1.00942 0.91435 0.99316 1.19280 0.93313 0.93671 1.01980 1.20941 1.00010 0.90733 0.87890 0.84176 1.21175 0.80417 0.84197 0.86330 1.90729 1.49735 1.79267 1.25624 1.45598 1.56814 1.10803 1.22937 1.22217 0.97930 1.00524 0.84521 1.22750 0.97375 0.85064 1.04305 1.62281 1.26216 1.24030 1.09747 1.21928 0.91877 1.03016 0.91277 1.20347 0.85121 0.82749 0.88214 1.90471 1.22854 1.56479 1.79274 1.41919 1.08031 1.62933 1.08008 1.19673 0.94481 1.47162 0.84468 0.89825 1.26026 0.94235 0.96652 1.04303 1.69680 0.98784 1.49950 1.37852 0.84941 0.77970 0.78645 0.76882 1.19521 1.19939 1.19635 1.20883 0.93736 0.97787 1.00898 0.90327 0.89983 0.92244 0.83652 0.83123 0.84132 0.75617 0.92406 0.86243 0.88473 0.87426 0.92276 0.88369 0.77448 0.91396 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 10.01 71.24 0.71 -1.79 16 2 C -0.10 -2.71 5.88 -19.87 -0.12 -2.83 16 3 C -0.12 -2.82 9.70 22.27 0.22 -2.61 16 4 C -0.12 -2.70 10.05 22.27 0.22 -2.47 16 5 C -0.11 -2.82 9.68 22.27 0.22 -2.61 16 6 C -0.08 -2.38 3.83 -19.86 -0.08 -2.45 16 7 C 0.12 3.19 2.71 43.29 0.12 3.31 16 8 H 0.14 3.34 8.05 -2.39 -0.02 3.32 16 9 C 0.49 14.05 5.69 87.68 0.50 14.55 16 10 O -0.57 -19.77 16.52 -3.02 -0.05 -19.82 16 11 N -0.71 -16.51 5.35 -465.95 -2.49 -19.00 16 12 C 0.07 1.65 6.44 86.45 0.56 2.21 16 13 C 0.03 0.88 5.60 86.24 0.48 1.36 16 14 N -0.50 -15.63 4.61 -884.43 -4.08 -19.71 16 15 C 0.05 1.80 3.94 85.55 0.34 2.14 16 16 C 0.45 20.75 7.40 87.65 0.65 21.39 16 17 O -0.61 -31.47 14.21 -3.06 -0.04 -31.51 16 18 N -0.57 -28.83 5.29 -307.00 -1.62 -30.45 16 19 C -0.33 -18.12 9.68 84.04 0.81 -17.30 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 23 Si 0.99 42.03 29.55 68.60 2.03 44.06 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 C -0.11 -3.46 6.04 22.26 0.13 -3.32 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 30 H 0.06 1.39 8.09 -2.38 -0.02 1.37 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.41 8.18 8.84 -92.71 -0.82 7.36 16 35 H 0.06 1.54 6.77 -2.39 -0.02 1.52 16 36 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 3.23 6.23 -2.39 -0.01 3.21 16 38 H 0.11 2.31 8.08 -2.39 -0.02 2.29 16 39 H 0.06 2.01 5.70 -2.39 -0.01 2.00 16 40 H 0.10 3.63 5.27 -2.39 -0.01 3.62 16 41 H 0.39 19.30 7.90 -92.71 -0.73 18.57 16 42 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.10 3.20 6.91 -2.91 -0.02 3.18 16 Total: -1.00 -69.07 347.91 -1.23 -70.30 By element: Atomic # 1 Polarization: 46.16 SS G_CDS: -0.49 Total: 45.67 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.23 Total: 9.39 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -7.91 Total: -118.09 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.09 Total: -51.33 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -69.07 -1.23 -70.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564101563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.842 kcal (2) G-P(sol) polarization free energy of solvation -69.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds