Wall clock time and date at job start Tue Mar 31 2020 11:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38256 * 119.99715 * 2 1 4 4 C 1.38215 * 120.00062 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00082 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00106 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00048 * 179.72210 * 6 5 4 8 8 H 1.08990 * 109.38643 * 325.92920 * 7 6 5 9 9 C 1.50263 * 109.38416 * 206.14052 * 7 6 5 10 10 O 1.21281 * 118.62140 * 42.66473 * 9 7 6 11 11 N 1.33716 * 122.74818 * 222.64651 * 9 7 6 12 12 C 1.46005 * 122.92990 * 1.68254 * 11 9 7 13 13 C 1.52987 * 110.04183 * 341.84173 * 12 11 9 14 14 N 1.46900 * 109.38737 * 85.72912 * 7 6 5 15 15 C 1.46899 * 111.00087 * 47.08055 * 14 7 6 16 16 C 1.50704 * 109.46852 * 178.10482 * 15 14 7 17 17 O 1.21295 * 120.00081 * 7.59741 * 16 15 14 18 18 N 1.34782 * 119.99790 * 187.58952 * 16 15 14 19 19 C 1.37096 * 119.99520 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00676 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99740 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99927 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00156 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47248 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47627 * 120.00237 * 23 21 19 26 26 H 1.48510 * 109.47186 * 240.00043 * 23 21 19 27 27 C 1.38214 * 120.00608 * 179.88817 * 2 1 3 28 28 H 1.08995 * 109.47748 * 90.00135 * 1 2 3 29 29 H 1.09012 * 109.46935 * 209.99948 * 1 2 3 30 30 H 1.08993 * 109.47530 * 329.99539 * 1 2 3 31 31 H 1.08004 * 120.00476 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.00372 * 180.02562 * 4 3 2 33 33 H 1.08007 * 120.00266 * 180.02562 * 5 4 3 34 34 H 0.97007 * 118.53287 * 181.71313 * 11 9 7 35 35 H 1.09003 * 109.37455 * 102.01508 * 12 11 9 36 36 H 1.09001 * 109.37593 * 221.78178 * 12 11 9 37 37 H 1.09003 * 109.58898 * 170.06317 * 13 12 11 38 38 H 1.09000 * 109.59269 * 290.36520 * 13 12 11 39 39 H 1.08997 * 109.47775 * 298.10732 * 15 14 7 40 40 H 1.08998 * 109.47253 * 58.11151 * 15 14 7 41 41 H 0.97001 * 120.00154 * 0.02562 * 18 16 15 42 42 H 0.97006 * 120.00177 * 180.02562 * 22 21 19 43 43 H 1.07999 * 119.99709 * 0.06885 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0002 0.0016 6 6 3.5807 -1.1968 0.0027 7 6 4.3343 -2.5019 -0.0025 8 1 5.2503 -2.3884 -0.5821 9 6 3.4791 -3.5691 -0.6250 10 8 2.8493 -3.2988 -1.6256 11 7 3.3838 -4.8045 -0.1222 12 6 4.0722 -5.2207 1.0963 13 6 5.2065 -4.2456 1.4168 14 7 4.6733 -2.8747 1.3774 15 6 3.5086 -2.7353 2.2617 16 6 3.8815 -3.1698 3.6557 17 8 5.0367 -3.4257 3.9226 18 7 2.9313 -3.2740 4.6059 19 6 3.2706 -3.6689 5.8741 20 1 4.2993 -3.8960 6.1120 21 6 2.2910 -3.7768 6.8536 22 7 1.0392 -3.5009 6.5641 23 14 2.7533 -4.3141 8.5818 24 1 4.2156 -4.5640 8.6480 25 1 2.3891 -3.2455 9.5466 26 1 2.0226 -5.5606 8.9249 27 6 2.1981 -1.1969 0.0023 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6581 2.1327 0.0004 32 1 4.1203 2.1328 0.0010 33 1 5.3517 0.0002 0.0024 34 1 2.8331 -5.4531 -0.5880 35 1 3.3637 -5.2362 1.9245 36 1 4.4852 -6.2195 0.9550 37 1 5.5999 -4.4567 2.4112 38 1 6.0012 -4.3539 0.6787 39 1 3.1883 -1.6936 2.2793 40 1 2.6950 -3.3593 1.8920 41 1 2.0074 -3.0697 4.3923 42 1 0.3553 -3.5759 7.2479 43 1 1.6582 -2.1322 0.0030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564101567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:47 Heat of formation + Delta-G solvation = -25.269235 kcal Electronic energy + Delta-G solvation = -27468.634241 eV Core-core repulsion = 23707.078421 eV Total energy + Delta-G solvation = -3761.555820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23089 -38.91663 -38.43099 -36.72343 -34.59069 -33.98997 -32.62762 -31.35066 -31.30625 -28.91160 -28.49255 -26.82672 -25.30084 -24.29821 -22.93056 -22.07720 -20.82394 -19.70107 -18.66138 -17.80396 -17.30373 -16.83499 -16.54734 -16.01794 -15.59825 -15.36009 -14.91455 -14.58114 -14.44535 -14.25835 -13.75923 -13.69281 -13.60728 -13.32331 -13.03613 -12.97837 -12.62007 -12.30059 -12.13193 -12.12174 -11.73927 -11.57867 -11.46881 -11.19623 -10.99808 -10.98567 -10.79462 -10.39291 -10.30621 -10.26272 -9.54471 -9.11283 -8.70024 -8.52547 -8.43455 -8.08425 -7.94390 -6.48557 -3.89807 1.39265 1.51980 2.55782 3.11057 3.15797 3.23168 3.29516 3.71710 3.80709 4.01934 4.19796 4.46498 4.57520 4.91591 4.92168 4.97125 5.04158 5.12738 5.19345 5.22469 5.36517 5.43180 5.46219 5.56523 5.61660 5.65289 5.71477 5.86233 5.91552 5.98764 6.10219 6.17290 6.21226 6.33118 6.53000 6.63124 6.66600 6.70894 7.00244 7.05795 7.12426 7.24890 7.48898 7.98215 8.14884 8.52651 9.10174 9.45466 9.95893 10.68803 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.004427 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.334463 B = 6323.727370 C = 7317.054461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.117 4.117 4 C -0.120 4.120 5 C -0.098 4.098 6 C -0.065 4.065 7 C 0.111 3.889 8 H 0.123 0.877 9 C 0.492 3.508 10 O -0.547 6.547 11 N -0.720 5.720 12 C 0.067 3.933 13 C 0.024 3.976 14 N -0.491 5.491 15 C 0.038 3.962 16 C 0.442 3.558 17 O -0.579 6.579 18 N -0.558 5.558 19 C -0.300 4.300 20 H 0.105 0.895 21 C 0.024 3.976 22 N -0.898 5.898 23 Si 0.929 3.071 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.092 4.092 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.397 0.603 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 3.140 -13.162 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.135 4.135 4 C -0.138 4.138 5 C -0.116 4.116 6 C -0.066 4.066 7 C -0.001 4.001 8 H 0.140 0.860 9 C 0.277 3.723 10 O -0.424 6.424 11 N -0.372 5.372 12 C -0.058 4.058 13 C -0.104 4.104 14 N -0.214 5.214 15 C -0.093 4.093 16 C 0.228 3.772 17 O -0.464 6.464 18 N -0.193 5.193 19 C -0.430 4.430 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.539 5.539 23 Si 0.756 3.244 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.110 4.110 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.232 0.768 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.159 0.841 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.293 3.580 -13.066 13.740 hybrid contribution -1.344 -1.081 0.342 1.758 sum 0.949 2.499 -12.724 13.002 Atomic orbital electron populations 1.20773 0.91238 1.02873 1.02110 1.19836 0.96098 0.92923 1.00013 1.21021 0.94328 0.97323 1.00874 1.21053 0.94205 0.97797 1.00773 1.20894 0.99998 0.91380 0.99351 1.19127 0.93228 0.92984 1.01286 1.20905 0.97522 0.90657 0.90988 0.85988 1.21126 0.82454 0.84032 0.84720 1.90741 1.45362 1.80295 1.25961 1.45713 1.50822 1.12671 1.28010 1.22263 0.96818 1.00236 0.86483 1.23034 0.95324 0.84998 1.07023 1.62353 1.30455 1.24882 1.03692 1.22054 0.91502 1.02656 0.93065 1.19582 0.86500 0.85181 0.85974 1.90416 1.19056 1.55459 1.81483 1.41874 1.09277 1.58702 1.09480 1.19756 0.96128 1.41943 0.85156 0.87682 1.25284 0.94792 0.97387 1.00357 1.69624 1.00460 1.48613 1.35231 0.85804 0.78930 0.78119 0.81514 1.19144 1.20694 1.20758 1.20940 0.93358 0.97787 0.98962 0.91360 0.91493 0.91531 0.86248 0.85981 0.85662 0.76791 0.90736 0.90000 0.84108 0.90519 0.88582 0.93459 0.77470 0.91816 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 36.00 0.36 -0.91 16 2 C -0.09 -1.20 5.88 -104.63 -0.62 -1.82 16 3 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 4 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 5 C -0.10 -1.30 9.72 -39.58 -0.38 -1.68 16 6 C -0.07 -0.96 3.62 -104.62 -0.38 -1.34 16 7 C 0.11 1.59 2.69 -70.23 -0.19 1.41 16 8 H 0.12 1.57 8.11 -51.93 -0.42 1.15 16 9 C 0.49 7.35 5.56 -11.67 -0.06 7.29 16 10 O -0.55 -9.58 15.99 5.56 0.09 -9.49 16 11 N -0.72 -9.28 5.32 -61.06 -0.32 -9.60 16 12 C 0.07 0.87 6.43 -4.32 -0.03 0.84 16 13 C 0.02 0.35 5.46 -3.70 -0.02 0.33 16 14 N -0.49 -7.81 4.79 -230.94 -1.11 -8.92 16 15 C 0.04 0.68 3.84 -4.97 -0.02 0.66 16 16 C 0.44 9.82 6.98 -10.98 -0.08 9.75 16 17 O -0.58 -14.27 13.41 5.54 0.07 -14.19 16 18 N -0.56 -13.54 5.29 -10.96 -0.06 -13.60 16 19 C -0.30 -8.00 9.68 -14.93 -0.14 -8.14 16 20 H 0.11 2.92 7.16 -52.49 -0.38 2.55 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -23.81 13.05 55.50 0.72 -23.09 16 23 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.09 -1.38 6.82 -39.58 -0.27 -1.65 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.76 8.09 -51.92 -0.42 0.34 16 30 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.40 4.52 8.84 -40.82 -0.36 4.16 16 35 H 0.07 1.11 6.66 -51.93 -0.35 0.76 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.14 2.46 5.42 -51.93 -0.28 2.18 16 38 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.10 1.75 6.39 -51.93 -0.33 1.42 16 40 H 0.05 0.81 6.02 -51.93 -0.31 0.50 16 41 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.12 1.86 6.54 -52.49 -0.34 1.51 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -30.81 346.71 -8.71 -39.52 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -5.60 Total: 17.26 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.71 Total: 1.55 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.76 Total: -55.20 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.16 Total: -23.69 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.81 -8.71 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564101567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.247 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds